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Liu J, Jiang W, Yu Y, Gong J, Chen G, Yang Y, Wang C, Sun D, Lu X. Applying machine learning to predict bowel preparation adequacy in elderly patients for colonoscopy: development and validation of a web-based prediction tool. Ann Med 2025; 57:2474172. [PMID: 40065741 PMCID: PMC11899208 DOI: 10.1080/07853890.2025.2474172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/06/2024] [Revised: 02/12/2025] [Accepted: 02/20/2025] [Indexed: 03/14/2025] Open
Abstract
BACKGROUND Adequate bowel preparation is crucial for effective colonoscopy, especially in elderly patients who face a high risk of inadequate preparation. This study develops and validates a machine learning model to predict bowel preparation adequacy in elderly patients before colonoscopy. METHODS The study adhered to the TRIPOD AI guidelines. Clinical data from 471 elderly patients collected between February and December 2023 were utilized for developing and internally validating the model, while 221 patients' data from March to June 2024 were used for external validation. The Boruta algorithm was applied for feature selection. Models including logistic regression, light gradient boosting machines, support vector machines (SVM), decision trees, random forests, and extreme gradient boosting were evaluated using metrics such as AUC, accuracy, sensitivity, and specificity. The SHAP algorithm helped rank feature importance. A web-based application was developed using the Streamlit framework to enhance clinical usability. RESULTS The Boruta algorithm identified 7 key features. The SVM model excelled with an AUC of 0.895 (95% CI: 0.822-0.969), and high accuracy, sensitivity, and specificity. In external validation, the SVM model maintained robust performance with an AUC of 0.889. The SHAP algorithm further explained the contribution of each feature to model predictions. CONCLUSION The study developed an interpretable and practical machine learning model for predicting bowel preparation adequacy in elderly patients, facilitating early interventions to improve outcomes and reduce resource wastage.
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Affiliation(s)
- Jianying Liu
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
| | - Wei Jiang
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
- Department of Gastroenterology and Hepatology, Zhongshan Hospital, Fudan University, Shanghai, China
| | - Yahong Yu
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
| | - Jiali Gong
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
| | - Guie Chen
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
| | - Yuxing Yang
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
| | - Chao Wang
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
| | - Dalong Sun
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
- Department of Gastroenterology and Hepatology, Zhongshan Hospital, Fudan University, Shanghai, China
| | - Xuefeng Lu
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
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Mo Y, Ge Y, Wang D, Wang J, Zhang R, Hu Y, Qin X, Hu Y, Lu S, Liu Y, Zhang WS. Comprehensive analysis of single-cell and bulk transcriptome unravels immune landscape of atherosclerosis and develops a S100 family based-diagnostic model. Comput Biol Chem 2025; 117:108436. [PMID: 40163962 DOI: 10.1016/j.compbiolchem.2025.108436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2024] [Revised: 03/05/2025] [Accepted: 03/17/2025] [Indexed: 04/02/2025]
Abstract
BACKGROUND The S100 family of calcium-binding proteins (S100s) had been tightly related to the biological processes of various cardiovascular diseases. This study aims to investigate the expression of S100s in Atherosclerosis (AS) and explore their potential as diagnostic biomarkers and therapeutic targets. METHODS We analyzed multiple sequencing datasets from the GEO database to compare the expression profiles of S100s in AS tissues versus normal samples. Employing unsupervised clustering techniques, AS subtypes were discerned based on the intricate variations in S100-related gene expression profiles. Subsequent analyses delved into immune cell infiltration and GSVA pathway enrichment, shedding light on the nuanced immune landscape characterizing diverse AS subtypes. Machine learning techniques were employed to develop a diagnostic model for AS. Single-cell RNA analysis was utilized to investigate the cellular distribution of S100 hub genes in AS. RESULTS Unsupervised clustering analysis identified two distinct AS subtypes (C1 and C2), characterized by specific S100 gene expression patterns. The RF-based diagnostic model exhibited the highest efficacy (AUC=0.881), and the top five genes (S100A4, S100A10, S100A11, S100A13, S100Z) were used to construct a diagnostic nomogram. CONCLUSION This study systematically elucidates the roles of S100s in AS, offering insights into molecular subtyping, immune characteristics, and diagnostic model construction. The findings provide valuable implications for the precise treatment and prognosis assessment of AS and pave the way for further research into related mechanisms.
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Affiliation(s)
- Yanfei Mo
- Department of Geriatrics, The First Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu, China; Department of Cardiology, Pukou Hospital of Traditional Chinese Medicine, Nanjing, Jiangsu, China; Jiangsu Medical College, Yancheng, Jiangsu, China
| | - Yaoqi Ge
- Department of General Practice, Zhongda Hospital, School of Medicine, Southeast University, Nanjing, China
| | - Dan Wang
- Department of Geriatrics, The First Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu, China
| | - Jizheng Wang
- Department of Geriatrics, The First Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu, China
| | - Rihua Zhang
- Department of the Core Facility, The First Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu, China
| | - Yifang Hu
- Department of Geriatrics, The First Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu, China
| | - Xiaoxuan Qin
- Department of Geriatrics, The First Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu, China
| | - Yanyan Hu
- Department of Geriatrics, The First Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu, China
| | - Shan Lu
- Maternity and Child Dept, The First Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu, China.
| | - Yun Liu
- Department of Geriatrics, The First Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu, China.
| | - Wen-Song Zhang
- Department of the Core Facility, The First Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu, China.
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Yin J, Xu Z, Wei W, Jia Z, Fang T, Jiang Z, Cao Z, Wu L, Wei N, Men Z, Guo Q, Zhang Q, Mao H. Laboratory measurement and machine learning-based analysis of driving factors for brake wear particle emissions from light-duty electric vehicles and heavy-duty vehicles. JOURNAL OF HAZARDOUS MATERIALS 2025; 488:137433. [PMID: 39884042 DOI: 10.1016/j.jhazmat.2025.137433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2024] [Revised: 01/26/2025] [Accepted: 01/27/2025] [Indexed: 02/01/2025]
Abstract
This study investigates brake wear particle (BWP) emissions from light-duty electric vehicles (EVs) and heavy-duty vehicles (HDVs) using a self-developed whole-vehicle testing system and a modified brake dynamometer. The results show that regenerative braking significantly reduces emissions: weak and strong regenerative braking modes reduce brake wear PM2.5 by 75 % and 87 %, and brake wear PM10 by 90 % and 95 %, respectively. HDVs with drum brakes produce lower emissions and higher PM2.5/PM10 ratios than those with disc brakes. A machine learning model (XGBoost) was developed to analyze the relationship between BWP emissions and factors (11 for light-duty EVs and 8 for HDVs, based on kinematic, vehicle, and braking parameters). SHapley Additive exPlanations (SHAP) were used for model interpretation. For light-duty EVs, reducing high kinetic energy losses (Ike > 6500 J) and initial speeds (V > 45 km/h) braking events significantly lowers emissions. Additionally, the emission reduction effect of regenerative braking intensity (BI) stabilizes when BI exceeds 900 J. For HDVs, controlling braking temperature (Avg.T < 200°C) and initial speed (V < 50 km/h) effectively reduces emissions. Our findings provide new insights into the emission characteristics and control strategies for BWPs. SYNOPSIS: The construction and interpretation of a machine learning based model of brake wear emissions provides new insights into the refined assessment and control of non-exhaust emissions.
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Affiliation(s)
- Jiawei Yin
- Tianjin Key Laboratory of Urban Transport Emission Research, College of Environmental Science and Engineering, Nankai University, Tianjin 300071, China
| | - Zhou Xu
- Tianjin Key Laboratory of Urban Transport Emission Research, College of Environmental Science and Engineering, Nankai University, Tianjin 300071, China
| | - Wendi Wei
- Tianjin Key Laboratory of Urban Transport Emission Research, College of Environmental Science and Engineering, Nankai University, Tianjin 300071, China
| | - Zhenyu Jia
- Tianjin Key Laboratory of Urban Transport Emission Research, College of Environmental Science and Engineering, Nankai University, Tianjin 300071, China
| | - Tiange Fang
- Tianjin Key Laboratory of Urban Transport Emission Research, College of Environmental Science and Engineering, Nankai University, Tianjin 300071, China
| | - Zhiwen Jiang
- Tianjin Key Laboratory of Urban Transport Emission Research, College of Environmental Science and Engineering, Nankai University, Tianjin 300071, China
| | - Zeping Cao
- Tianjin Key Laboratory of Urban Transport Emission Research, College of Environmental Science and Engineering, Nankai University, Tianjin 300071, China
| | - Lin Wu
- Tianjin Key Laboratory of Urban Transport Emission Research, College of Environmental Science and Engineering, Nankai University, Tianjin 300071, China
| | - Ning Wei
- Jinchuan Group Information and Automation Engineering Co. Ltd., Jinchang 737100, China
| | - Zhengyu Men
- Tianjin Key Laboratory of Urban Transport Emission Research, College of Environmental Science and Engineering, Nankai University, Tianjin 300071, China
| | - Quanyou Guo
- Tianjin Key Laboratory of Urban Transport Emission Research, College of Environmental Science and Engineering, Nankai University, Tianjin 300071, China
| | - Qijun Zhang
- Tianjin Key Laboratory of Urban Transport Emission Research, College of Environmental Science and Engineering, Nankai University, Tianjin 300071, China.
| | - Hongjun Mao
- Tianjin Key Laboratory of Urban Transport Emission Research, College of Environmental Science and Engineering, Nankai University, Tianjin 300071, China
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Yang F, Li X, Wang J, Duan Z, Ren C, Guo P, Kong Y, Bi M, Zhang Y. Identification of lipid metabolism-related gene markers and construction of a diagnostic model for multiple sclerosis: An integrated analysis by bioinformatics and machine learning. Anal Biochem 2025; 700:115781. [PMID: 39855613 DOI: 10.1016/j.ab.2025.115781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2024] [Revised: 12/20/2024] [Accepted: 01/20/2025] [Indexed: 01/27/2025]
Abstract
BACKGROUND Multiple sclerosis (MS) is an autoimmune inflammatory disorder that causes neurological disability. Dysregulated lipid metabolism contributes to the pathogenesis of MS. This study aimed to identify lipid metabolism-related gene markers and construct a diagnostic model for MS. METHODS Gene expression profiles for MS were obtained from the Gene Expression Omnibus database. Differentially expressed lipid metabolism-related genes (LMRGs) were identified and performed functional enrichment analysis. Least absolute shrinkage and selection operator (LASSO), random forest (RF), and protein-protein interaction (PPI) analysis were employed to screen hub genes. The predictive power of hub genes was evaluated using receiver operating characteristic (ROC) curves. We developed an artificial neural network (ANN) model and validated its performance in three test sets. Immune cell infiltration analysis, Gene set enrichment analysis, and ceRNA network construction were performed to explore the role of lipid metabolism in the pathogenesis of MS. Drugs prediction and molecular docking were utilized to identify potential therapeutic drugs. RESULTS We identified 40 differentially expressed LMRGs, with significant enrichment in Arachidonic acid metabolism, Steroid hormone biosynthesis, Fatty acid elongation, and Sphingolipid metabolism. AKR1C3, NFKB1, and ABCA1 were identified as gene markers for MS, and their expression was upregulated in the MS group. The areas under the ROC curve (AUCs) for AKR1C3, NFKB1, and ABCA1 in the training set were 0.779, 0.703, and 0.726, respectively. The ANN model exhibited good discriminative ability in both the training and test sets, achieving an AUC of 0.826 on the training set and AUC values of 0.822, 0.890, and 0.833 on the test sets. Gamma.delta.T.cell, Natural.killer.T.cell, Plasmacytoid.dendritic.cell, Regulatory.T.cell, and Type.1.T.helper.cell were highly expressed in the MS group. A ceRNA network showed a complex regulatory interplay involving hub genes. Luteolin, isoflavone, and thalidomide had good binding affinities to the hub genes. CONCLUSION Our study emphasized the crucial role of lipid metabolism in MS, identifing AKR1C3, NFKB1, and ABCA1 as gene markers. The ANN model exhibited good performance on both the training and testing sets. These findings offer valuable insights into the molecular mechanisms underlying MS, and establish a scientific foundation for future research.
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Affiliation(s)
- Fangjie Yang
- Rehabilitation Medicine College, Henan University of Chinese Medicine, Zhengzhou, Henan, China
| | - Xinmin Li
- School of Traditional Chinese Medicine, Henan University of Chinese Medicine, Zhengzhou, Henan, China
| | - Jing Wang
- Rehabilitation Medicine College, Henan University of Chinese Medicine, Zhengzhou, Henan, China
| | - Zhenfei Duan
- Rehabilitation Medicine College, Henan University of Chinese Medicine, Zhengzhou, Henan, China
| | - Chunlin Ren
- Rehabilitation Medicine College, Henan University of Chinese Medicine, Zhengzhou, Henan, China
| | - Pengxue Guo
- Rehabilitation Medicine College, Henan University of Chinese Medicine, Zhengzhou, Henan, China
| | - Yuting Kong
- Rehabilitation Medicine College, Henan University of Chinese Medicine, Zhengzhou, Henan, China
| | - Mengyao Bi
- Rehabilitation Medicine College, Henan University of Chinese Medicine, Zhengzhou, Henan, China
| | - Yasu Zhang
- Rehabilitation Medicine College, Henan University of Chinese Medicine, Zhengzhou, Henan, China.
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Guo A, Chen Y, Liu H, Gao S, Huang X, Liu D, Zhao Q, Hong X. Predicting and validating the risk of interstitial lung disease in systemic lupus erythematosus. Int J Med Inform 2025; 197:105839. [PMID: 39986125 DOI: 10.1016/j.ijmedinf.2025.105839] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2025] [Revised: 02/10/2025] [Accepted: 02/13/2025] [Indexed: 02/24/2025]
Abstract
OBJECTIVE Our study aimed toconstruct a web-based calculator to predict high risk patients of interstitial lung disease (ILD) in systemic lupus erythematosus (SLE). METHODS This retrospective study comprised training and test cohorts, including 581 and 86 patients, respectively. Univariate, least absolute shrinkage and selection operator (LASSO), random forest (RF), eXtreme Gradient Boosting (XGBoost), and logistic regression (LR) analyses were performed. A Venn diagram was used to investigate critical features. Receiver operating characteristic (ROC) analysis and decision curve analysis were used to evaluate the model's performance. Risk stratification was performed using the best ROC cut-off value. The web-based calculator was established using Streamlit software. RESULTS Characteristics such as Raynaud's phenomenon, pulmonary artery systolic pressure, serositis, anti-U1RNP antibodies, anti-Ro52 antibodies, C-reactive protein, age, and disease course were associated with SLE complicated by ILD (SLE-ILD). LR-Venn, RF-Venn, XGBoost-Venn, LASSO-logic, RF, and XGBoost models were constructed. In training cohort, the XGBoost model demonstrated the highest area under the ROC curve (AUC, 0.890; cut-off value, 0.197; sensitivity, 0.793; specificity, 0.836) and provideda netbenefitin decision curve analysis (odds ratio [OR] for SLE-ILD [high- vs. low-risk], 19.6). The model was validated in the test cohort (AUC, 0.866; sensitivity, 0.722; specificity, 0.897; OR, 22.7). Furthermore, an XGBoost model-based web calculator was developed. CONCLUSION Our web calculator (https://st-xgboost-app-kcv9qm.streamlit.app/) greatly improved risk prediction for SLE-ILD and was implemented effectively.
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Affiliation(s)
- Aoyang Guo
- The Second Clinical Medical College of Jinan University, Department of Rheumatology and Immunology, Shenzhen People's Hospital, Shenzhen, China; Department of Rheumatology and Immunology, Shenzhen People's Hospital (The Second Clinical Medical College, Jinan University; The First Affiliated Hospital, Southern University of Science and Technology), Shenzhen, China; Department of Standardized Training of Residents, Shenzhen People's Hospital, Shenzhen, China
| | - Yanran Chen
- The Second Clinical Medical College of Jinan University, Department of Rheumatology and Immunology, Shenzhen People's Hospital, Shenzhen, China
| | - Hongyang Liu
- The Second Clinical Medical College of Jinan University, Department of Rheumatology and Immunology, Shenzhen People's Hospital, Shenzhen, China
| | - Shujun Gao
- The Second Clinical Medical College of Jinan University, Department of Rheumatology and Immunology, Shenzhen People's Hospital, Shenzhen, China
| | - Xinyi Huang
- The Second Clinical Medical College of Jinan University, Department of Rheumatology and Immunology, Shenzhen People's Hospital, Shenzhen, China; Department of Rheumatology and Immunology, Shenzhen People's Hospital (The Second Clinical Medical College, Jinan University; The First Affiliated Hospital, Southern University of Science and Technology), Shenzhen, China
| | - Dongzhou Liu
- The Second Clinical Medical College of Jinan University, Department of Rheumatology and Immunology, Shenzhen People's Hospital, Shenzhen, China; Department of Rheumatology and Immunology, Shenzhen People's Hospital (The Second Clinical Medical College, Jinan University; The First Affiliated Hospital, Southern University of Science and Technology), Shenzhen, China
| | - Qianqian Zhao
- The Second Clinical Medical College of Jinan University, Department of Rheumatology and Immunology, Shenzhen People's Hospital, Shenzhen, China; Department of Rheumatology and Immunology, Shenzhen People's Hospital (The Second Clinical Medical College, Jinan University; The First Affiliated Hospital, Southern University of Science and Technology), Shenzhen, China.
| | - Xiaoping Hong
- The Second Clinical Medical College of Jinan University, Department of Rheumatology and Immunology, Shenzhen People's Hospital, Shenzhen, China; Department of Rheumatology and Immunology, Shenzhen People's Hospital (The Second Clinical Medical College, Jinan University; The First Affiliated Hospital, Southern University of Science and Technology), Shenzhen, China.
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Guo Z, Zhang Z, Liu L, Zhao Y, Liu Z, Zhang C, Qi H, Feng J, Yao P. Explainable machine learning for predicting lung metastasis of colorectal cancer. Sci Rep 2025; 15:13611. [PMID: 40253427 PMCID: PMC12009389 DOI: 10.1038/s41598-025-98188-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2024] [Accepted: 04/09/2025] [Indexed: 04/21/2025] Open
Abstract
Patients with lung metastasis of colorectal cancer typically have a poor prognosis. Therefore, establishing an effective screening and diagnosis model is paramount. Our study seeks to construct and verify a predictive model utilizing machine learning (ML) that can evaluate the risk of lung metastasis with newly diagnosed colorectal cancer (CRC) using Shapley Additive exPlanations (SHAP). Using the Surveillance, Epidemiology, and End Results database, 39,674 were extracted for model development, all of whom had been pathologically diagnosed with CRC. The data spans from 2010 to 2015. Our study has constructed seven ML algorithms based on the data mentioned above, including Random Forest (RF), Decision Tree, Support Vector Machine, Naive Bayes, K-Nearest Neighbor, eXtreme Gradient Boosting, and Gradient Boosting Machine. We selected the best algorithm and visualized it using SHAP. We conducted a validation of the model utilizing data from a Chinese hospital to assess its practicality. Based on this, we have constructed an open web calculator. 39,674 patient data were included in our study, among whom 1369 (3.5%) presented with distant lung metastasis. The Random Forest (RF) algorithm demonstrated the highest predictive capability within the internal test set (AUC of 0.980, AUPR of 0.941). Furthermore, the random forest algorithm also exhibited excellent performance in external validation sets. Meanwhile, we have also established a web calculator ( http://121.43.117.60:8003/ ). The RF algorithm has demonstrated excellent predictive performance. It can assist clinicians in devising more personalized treatment plans.
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Affiliation(s)
- Zhentian Guo
- Department of General Surgery, Beijing Electric Power Hospital, State Grid Corporation of China, Capital Medical University, Beijing, 100073, China
- China Clinical Medical Research Center for Hepatobiliary Diseases in General Surgery, China General Technology Group, Beijing, 100073, China
| | - Zongming Zhang
- Department of General Surgery, Beijing Electric Power Hospital, State Grid Corporation of China, Capital Medical University, Beijing, 100073, China.
- China Clinical Medical Research Center for Hepatobiliary Diseases in General Surgery, China General Technology Group, Beijing, 100073, China.
| | - Limin Liu
- Department of General Surgery, Beijing Electric Power Hospital, State Grid Corporation of China, Capital Medical University, Beijing, 100073, China
- China Clinical Medical Research Center for Hepatobiliary Diseases in General Surgery, China General Technology Group, Beijing, 100073, China
| | - Yue Zhao
- Department of General Surgery, Beijing Electric Power Hospital, State Grid Corporation of China, Capital Medical University, Beijing, 100073, China
- China Clinical Medical Research Center for Hepatobiliary Diseases in General Surgery, China General Technology Group, Beijing, 100073, China
| | - Zhuo Liu
- Department of General Surgery, Beijing Electric Power Hospital, State Grid Corporation of China, Capital Medical University, Beijing, 100073, China
- China Clinical Medical Research Center for Hepatobiliary Diseases in General Surgery, China General Technology Group, Beijing, 100073, China
| | - Chong Zhang
- Department of General Surgery, Beijing Electric Power Hospital, State Grid Corporation of China, Capital Medical University, Beijing, 100073, China
- China Clinical Medical Research Center for Hepatobiliary Diseases in General Surgery, China General Technology Group, Beijing, 100073, China
| | - Hui Qi
- Department of General Surgery, Beijing Electric Power Hospital, State Grid Corporation of China, Capital Medical University, Beijing, 100073, China
- China Clinical Medical Research Center for Hepatobiliary Diseases in General Surgery, China General Technology Group, Beijing, 100073, China
| | - Jinqiu Feng
- China Clinical Medical Research Center for Hepatobiliary Diseases in General Surgery, China General Technology Group, Beijing, 100073, China
| | - Peijie Yao
- China Clinical Medical Research Center for Hepatobiliary Diseases in General Surgery, China General Technology Group, Beijing, 100073, China
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Tang L, Wu L, Dai M, Liu N, Liu L. Integrative analysis of signaling and metabolic pathways, immune infiltration patterns, and machine learning-based diagnostic model construction in major depressive disorder. Sci Rep 2025; 15:13519. [PMID: 40253457 PMCID: PMC12009401 DOI: 10.1038/s41598-025-97623-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2024] [Accepted: 04/07/2025] [Indexed: 04/21/2025] Open
Abstract
Major depressive disorder (MDD) is a multifactorial disorder involving genetic and environmental factors, with unclear pathogenesis. This study aims to explore the pathogenic pathway of MDD and its relationship with immune responses and to discover its potential targets by bioinformatics methods. We first applied gene set variation analysis (GSVA) and seven different immune infiltration algorithms to the GSE98793 dataset to determine the differences in signaling pathways, metabolic pathways, and immune cell infiltration between MDD patients and healthy controls. Differentially expressed genes between MDD patients and controls were obtained from five datasets (GSE98793, GSE32280, GSE38206, GSE39653, and GSE52790), and 113 machine learning methods were employed to construct MDD diagnostic models. Based on the constructed MDD diagnostic models, MDD patients were divided into high-risk and low-risk groups. GSVA and immune microenvironment analyses were conducted to investigate the differences between the two groups. Furthermore, potential drugs and therapeutic targets for the high-risk MDD group were explored to provide new insights and directions for the precise treatment of MDD. GSVA and immune infiltration results indicate that patients with MDD exhibit differences from normal individuals in various aspects, including biological processes, signaling pathways, metabolic processes, and immune cells. To investigate the functions and biological significance of differentially expressed genes in MDD patients, we performed GO and KEGG enrichment analyses on the differentially expressed genes from five databases (GSE98793, GSE32280, GSE38206, GSE39653, and GSE52790). By comparing the enrichment results across the five datasets, we found that the cell-killing signaling pathway was consistently present in the enriched signaling pathways of all datasets, suggesting that this pathway may play a crucial role in the pathogenesis of MDD. The random forest algorithm (AUC = 0.788) was selected as the optimal algorithm from 113 machine learning algorithms, leading to the development of a robust and predictive MDD algorithm, highlighting the important role of NPL in MDD. By dividing MDD into high and low-risk subgroups based on diagnostic model scores, enrichment pathways, and immunological results further demonstrated that high-risk MDD is associated with increased levels of reactive oxygen species, inflammation, and numbers of T cells and B cells. Through GSEA scoring, five upregulated pathways in the high-risk MDD group were identified, and multiple potential drugs such as Mibefradil, LY364947, ZLN005, STA- 5326, and vemurafenib were screened. Patients with MDD show differences in signaling pathways, metabolic pathways, and immune mechanisms. By constructing an MDD diagnostic model, we predicted the key genes of MDD and the characteristic pathways associated with a higher risk of MDD. This provides new insights for risk stratification identification and offers new perspectives for the clinical application of precision immunotherapy and drug development.
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Affiliation(s)
- Lei Tang
- Mental Health Center, Affiliated Hospital of North Sichuan Medical College, 1 South Maoyuan Road, 637000, Nanchong, China
- School of Psychiatry, North Sichuan Medical College, Nanchong, China
- Department of Psychiatry, Sleep Medicine Centre, First Affiliated Hospital of Jinan University, Guangzhou, China
| | - Liling Wu
- Department of Pharmacy, The Second Clinical School of North Sichuan Medical College, Nanchong Hospital of Beijing Anzhen Hospital CMU (Nanchong Central Hospital), Nanchong, China
| | - Mengqin Dai
- Mental Health Center, Affiliated Hospital of North Sichuan Medical College, 1 South Maoyuan Road, 637000, Nanchong, China
- School of Psychiatry, North Sichuan Medical College, Nanchong, China
| | - Nian Liu
- Department of Radiology, Affiliated Hospital of North Sichuan Medical College, Nanchong, China.
| | - Lu Liu
- Mental Health Center, Affiliated Hospital of North Sichuan Medical College, 1 South Maoyuan Road, 637000, Nanchong, China.
- School of Psychiatry, North Sichuan Medical College, Nanchong, China.
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Liu L, Bi B, Gui M, Zhang L, Ju F, Wang X, Cao L. Development and internal validation of an interpretable risk prediction model for diabetic peripheral neuropathy in type 2 diabetes: a single-centre retrospective cohort study in China. BMJ Open 2025; 15:e092463. [PMID: 40180384 PMCID: PMC11969608 DOI: 10.1136/bmjopen-2024-092463] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/15/2024] [Accepted: 03/07/2025] [Indexed: 04/05/2025] Open
Abstract
OBJECTIVE Diabetic peripheral neuropathy (DPN) is a common and serious complication of diabetes, which can lead to foot deformity, ulceration, and even amputation. Early identification is crucial, as more than half of DPN patients are asymptomatic in the early stage. This study aimed to develop and validate multiple risk prediction models for DPN in patients with type 2 diabetes mellitus (T2DM) and to apply the Shapley Additive Explanation (SHAP) method to interpret the best-performing model and identify key risk factors for DPN. DESIGN A single-centre retrospective cohort study. SETTING The study was conducted at a tertiary teaching hospital in Hainan. PARTICIPANTS AND METHODS Data were retrospectively collected from the electronic medical records of patients with diabetes admitted between 1 January 2021 and 28 March 2023. After data preprocessing, 73 variables were retained for baseline analysis. Feature selection was performed using univariate analysis combined with recursive feature elimination (RFE). The dataset was split into training and test sets in an 8:2 ratio, with the training set balanced via the Synthetic Minority Over-sampling Technique. Six machine learning algorithms were applied to develop prediction models for DPN. Hyperparameters were optimised using grid search with 10-fold cross-validation. Model performance was assessed using various metrics on the test set, and the SHAP method was used to interpret the best-performing model. RESULTS The study included 3343 T2DM inpatients, with a median age of 60 years (IQR 53-69), and 88.6% (2962/3343) had DPN. The RFE method identified 12 key factors for model construction. Among the six models, XGBoost showed the best predictive performance, achieving an area under the curve of 0.960, accuracy of 0.927, precision of 0.969, recall of 0.948, F1-score of 0.958 and a G-mean of 0.850 on the test set. The SHAP analysis highlighted C reactive protein, total bile acids, gamma-glutamyl transpeptidase, age and lipoprotein(a) as the top five predictors of DPN. CONCLUSIONS The machine learning approach successfully established a DPN risk prediction model with excellent performance. The use of the interpretable SHAP method could enhance the model's clinical applicability.
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Affiliation(s)
- Lianhua Liu
- Department of Biostatistics, School of Public Health, Hainan Medical University, Haikou, Hainan, China
| | - Bo Bi
- Department of Biostatistics, School of Public Health, Hainan Medical University, Haikou, Hainan, China
| | - Mei Gui
- Department of Biostatistics, School of Public Health, Hainan Medical University, Haikou, Hainan, China
| | - Linli Zhang
- Department of Mathematics, Physics, and Chemistry teaching, Hainan University, Haikou, Hainan, China
| | - Feng Ju
- Department of Endocrinology, The Second Affiliated Hospital of Hainan Medical University, Haikou, Hainan, China
| | - Xiaodan Wang
- Department of Biostatistics, School of Public Health, Hainan Medical University, Haikou, Hainan, China
| | - Li Cao
- Department of Biostatistics, School of Public Health, Hainan Medical University, Haikou, Hainan, China
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9
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Li H, Zhang L, Shu B, Wang X, Yang S. Endoplasmic reticulum stress-related signatures: a game-changer in prognostic stratification for hepatocellular carcinoma. Eur J Gastroenterol Hepatol 2025; 37:454-465. [PMID: 39589828 DOI: 10.1097/meg.0000000000002894] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/28/2024]
Abstract
BACKGROUND Hepatocellular carcinoma (HCC) has limited therapeutic options and a poor prognosis. The endoplasmic reticulum (ER) plays a crucial role in tumor progression and response to stress, making it a promising target for HCC stratification. This study aimed to develop a risk stratification model using ER stress-related signatures. METHODS We utilized transcriptome data from The Cancer Genome Atlas and Gene Expression Omnibus, which encompass whole-genome expression profiles and clinical annotations. Machine learning algorithms, including the least absolute shrinkage and selection operator, random forest, and support vector machine recursive feature elimination, were applied to the key genes associated with HCC prognosis. A prognostic system was developed using univariate Cox hazard analysis and least absolute shrinkage and selection operator Cox regression, followed by validation using Kaplan-Meier analysis and receiver operating characteristic curves. Tumor immune dysfunction and exclusion tools were used to predict immunotherapy responsiveness. RESULTS Two distinct clusters associated with ER stress were identified in HCC, each exhibiting unique clinical and biological features. Using a computational approach, a prognostic risk model, namely the ER stress-related signature, was formulated, demonstrating enhanced predictive accuracy compared with that of existing prognostic models. An effective clinical nomogram was established by integrating the risk model with clinicopathological factors. Patients with lower risk scores exhibited improved responsiveness to various chemotherapeutic, targeted, and immunotherapeutic agents. CONCLUSION The critical role of ER stress in HCC is highlighted. The ER stress-related signature developed in this study is a powerful tool to assess the risk and clinical treatment of HCC.
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Affiliation(s)
| | - Lei Zhang
- Department of Ultrasound, Beijing Tsinghua Changgung Hospital, School of Clinical Medicine, Tsinghua University
| | - Bin Shu
- Hepatopancereatobiliary Center
| | | | - Shizhong Yang
- Hepatopancreatobiliary Center, Beijing Tsinghua Changgung Hospital, Institute for Precision Medicine, Key Laboratory of Digital Intelligence Hepatology (Ministry of Education), Tsinghua University
- Research Unit of Precision Hepatobiliary Surgery Paradigm, Chinese Academy of Medical Sciences, Beijing, China
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10
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Yuan G, Ge Z, Zheng J, Yan X, Fu M, Li M, Yang X, Tang L. CNN-based diagnosis model of children's bladder compliance using a single intravesical pressure signal. Comput Methods Biomech Biomed Engin 2025; 28:698-709. [PMID: 38193146 DOI: 10.1080/10255842.2023.2301414] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Revised: 09/29/2023] [Accepted: 12/20/2023] [Indexed: 01/10/2024]
Abstract
Bladder compliance assessment is crucial for diagnosing bladder functional disorders, with urodynamic study (UDS) being the principal evaluation method. However, the application of UDS is intricate and time-consuming in children. So it'S necessary to develop an efficient bladder compliance screen approach before UDS. In this study, We constructed a dataset based on UDS and designed a 1D-CNN model to optimize and train the network. Then applied the trained model to a dataset obtained solely through a proposed perfusion experiment. Our model outperformed other algorithms. The results demonstrate the potential of our model to alert abnormal bladder compliance accurately and efficiently.
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Affiliation(s)
- Gang Yuan
- School of Biomedical Engineering (Suzhou), Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
- Department of Medical Imaging, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou, China
| | - Zicong Ge
- School of Biomedical Engineering (Suzhou), Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
- Department of Medical Imaging, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou, China
| | - Jian Zheng
- School of Biomedical Engineering (Suzhou), Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
- Department of Medical Imaging, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou, China
| | - Xiangming Yan
- Department of Surgery, Children's Hospital of Soochow University, Soochow University, Suzhou, China
| | - Mingcui Fu
- Department of Surgery, Children's Hospital of Soochow University, Soochow University, Suzhou, China
| | - Ming Li
- School of Biomedical Engineering (Suzhou), Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
- Department of Medical Imaging, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou, China
| | - Xiaodong Yang
- School of Biomedical Engineering (Suzhou), Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
- Department of Medical Imaging, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou, China
| | - Liangfeng Tang
- Department of Pediatric Urology, Children's Hospital, Fudan University, Shanghai, China
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11
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Yang H, Liu J, Sun H. Risk prediction model for adult intolerance to enteral nutrition feeding - A literature review. Am J Med Sci 2025; 369:427-433. [PMID: 39617212 DOI: 10.1016/j.amjms.2024.11.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2023] [Revised: 11/20/2024] [Accepted: 11/27/2024] [Indexed: 12/16/2024]
Abstract
Enteral nutrition is an important clinical nutritional supplementation method, especially for adult patients who are unable to eat normally or require additional nutritional support. However, many patients experience intolerance to enteral nutrition, such as delayed gastric emptying, bloating, and diarrhea, which not only affect the patient's nutritional status but also increase the risk of medical complications. In recent years, medical researchers have been dedicated to identifying and analyzing various factors that contribute to enteral nutrition intolerance, including the patient's disease status, nutritional formula, feeding method, and rate. In addition, research is also exploring the establishment of risk prediction models to more accurately predict which patients may develop enteral nutrition intolerance. These models typically combine clinical parameters, biomarkers, and patient individual characteristics, aiming to assist clinicians in better planning and adjusting nutritional treatment plans, thereby reducing the occurrence of intolerance events. This review summarizes the research progress on enteral nutrition intolerance in adult patients, with a focus on the latest developments in intolerance factors and risk prediction models, providing valuable guidance for clinical practice and helping improve patients' nutritional status and overall health.
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Affiliation(s)
- Hui Yang
- School of Nursing, Southwest Medical University, Luzhou, Sichuan 646000, China; The First Affiliated Hospital of Chengdu Medical College, Chengdu, Sichuan 610500, China
| | - Jinmei Liu
- The First Affiliated Hospital of Chengdu Medical College, Chengdu, Sichuan 610500, China
| | - Hongyan Sun
- School of Nursing, Southwest Medical University, Luzhou, Sichuan 646000, China.
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12
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Ferreira HB, Trindade F, Nogueira-Ferreira R, Leite-Moreira A, Ferreira R, Dias-Neto M, Domingues MR. Lipidomic insights on abdominal aortic aneurysm and peripheral arterial disease. J Mol Med (Berl) 2025; 103:365-380. [PMID: 40011252 PMCID: PMC12003574 DOI: 10.1007/s00109-025-02524-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2024] [Revised: 01/10/2025] [Accepted: 02/18/2025] [Indexed: 02/28/2025]
Abstract
Abdominal aortic aneurysm (AAA) and peripheral arterial disease (PAD) are two cardiovascular diseases associated with considerable morbidity, mortality and quality of life impairment. As they are multifactorial diseases, several factors contribute to their pathogenesis, including oxidative stress and lipid peroxidation, and these may have key roles in the development of these pathologies. Alterations of the lipid metabolism and lipid profile have been reported in cardiovascular diseases but to a lesser extent in AAA and PAD. Modifications in the profile of some molecular lipid species, in particular, native phospholipid and triglyceride species were mainly reported for AAA, while alterations in the fatty acid profile were noticed in the case of PAD. Oxidized phospholipids were also reported for AAA. Although AAA and PAD have a common atherosclerotic root, lipidomics demonstrates the existence of distinct lipid. Lipidomic research regarding AAA and PAD is still scarce and should be set in motion to increase the knowledge on the lipid changes that occur in these diseases, contributing not only to the discovery of new biomarkers for diagnosis and prognosis assessment but also to tailor precision medicine in the clinical field.
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Affiliation(s)
- Helena Beatriz Ferreira
- Mass Spectrometry Center, LAQV-REQUIMTE, Department of Chemistry, University of Aveiro, Campus Universitário de Santiago, 3810-193, Aveiro, Portugal.
| | - Fábio Trindade
- RISE-Health, Department of Surgery and Physiology, Faculty of Medicine, University of Porto, 4200-319, Porto, Portugal
| | - Rita Nogueira-Ferreira
- RISE-Health, Department of Surgery and Physiology, Faculty of Medicine, University of Porto, 4200-319, Porto, Portugal
| | - Adelino Leite-Moreira
- RISE-Health, Department of Surgery and Physiology, Faculty of Medicine, University of Porto, 4200-319, Porto, Portugal
- Department of Cardiothoracic Surgery, Centro Hospitalar Universitário São João, 4200-319, Porto, Portugal
| | - Rita Ferreira
- Mass Spectrometry Center, LAQV-REQUIMTE, Department of Chemistry, University of Aveiro, Campus Universitário de Santiago, 3810-193, Aveiro, Portugal
| | - Marina Dias-Neto
- RISE-Health, Department of Surgery and Physiology, Faculty of Medicine, University of Porto, 4200-319, Porto, Portugal
- Department of Angiology and Vascular Surgery, Unidade Local de Saúde São João, Porto, Portugal
| | - M Rosário Domingues
- Mass Spectrometry Center, LAQV-REQUIMTE, Department of Chemistry, University of Aveiro, Campus Universitário de Santiago, 3810-193, Aveiro, Portugal
- CESAM - Centre for Environmental and Marine Studies, Department of Chemistry, University of Aveiro, Campus Universitário de Santiago, 3810-193, Aveiro, Portugal
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13
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Zhao X, Shen X, Jia F, He X, Zhao D, Li P. Using machine learning models to identify severe subjective cognitive decline and related factors in nurses during the menopause transition: a pilot study. Menopause 2025; 32:295-305. [PMID: 39808112 DOI: 10.1097/gme.0000000000002500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2025]
Abstract
OBJECTIVE This study aims to develop and validate a machine learning model for identifying individuals within the nursing population experiencing severe subjective cognitive decline (SCD) during the menopause transition, along with their associated factors. METHODS A secondary analysis was performed using cross-sectional data from 1,264 nurses undergoing the menopause transition. The data set was randomly split into training (75%) and validation sets (25%), with the Bortua algorithm employed for feature selection. Seven machine learning models were constructed and optimized. Model performance was assessed using area under the receiver operating characteristic curve, accuracy, sensitivity, specificity, and F1 score. Shapley Additive Explanations analysis was used to elucidate the weights and characteristics of various factors associated with severe SCD. RESULTS The average SCD score among nurses in the menopause transition was (5.38 ± 2.43). The Bortua algorithm identified 13 significant feature factors. Among the seven models, the support vector machine exhibited the best overall performance, achieving an area under the receiver operating characteristic curve of 0.846, accuracy of 0.789, sensitivity of 0.753, specificity of 0.802, and an F1 score of 0.658. The two variables most strongly associated with SCD were menopausal symptoms and the stage of menopause. CONCLUSIONS The machine learning models effectively identify individuals with severe SCD and the related factors associated with severe SCD in nurses during the menopause transition. These findings offer valuable insights for the management of cognitive health in women undergoing the menopause transition.
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Affiliation(s)
- Xiangyu Zhao
- From the School of Nursing and Rehabilitation, Shandong University, Jinan, Shandong, China
| | - Xiaona Shen
- From the School of Nursing and Rehabilitation, Shandong University, Jinan, Shandong, China
| | - Fengcai Jia
- Sleep Medicine Department 1, Shandong Mental Health Center, Jinan, Shandong, China
| | - Xudong He
- From the School of Nursing and Rehabilitation, Shandong University, Jinan, Shandong, China
| | - Di Zhao
- From the School of Nursing and Rehabilitation, Shandong University, Jinan, Shandong, China
| | - Ping Li
- From the School of Nursing and Rehabilitation, Shandong University, Jinan, Shandong, China
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14
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Araújo CC, Frias J, Mendes F, Martins M, Mota J, Almeida MJ, Ribeiro T, Macedo G, Mascarenhas M. Unlocking the Potential of AI in EUS and ERCP: A Narrative Review for Pancreaticobiliary Disease. Cancers (Basel) 2025; 17:1132. [PMID: 40227709 PMCID: PMC11988021 DOI: 10.3390/cancers17071132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2025] [Revised: 02/14/2025] [Accepted: 03/03/2025] [Indexed: 04/15/2025] Open
Abstract
Artificial Intelligence (AI) is transforming pancreaticobiliary endoscopy by enhancing diagnostic accuracy, procedural efficiency, and clinical outcomes. This narrative review explores AI's applications in endoscopic ultrasound (EUS) and endoscopic retrograde cholangiopancreatography (ERCP), emphasizing its potential to address diagnostic and therapeutic challenges in pancreaticobiliary diseases. In EUS, AI improves pancreatic mass differentiation, malignancy prediction, and landmark recognition, demonstrating high diagnostic accuracy and outperforming traditional guidelines. In ERCP, AI facilitates precise biliary stricture identification, optimizes procedural techniques, and supports decision-making through real-time data integration, improving ampulla recognition and predicting cannulation difficulty. Additionally, predictive analytics help mitigate complications like post-ERCP pancreatitis. The future of AI in pancreaticobiliary endoscopy lies in multimodal data fusion, integrating imaging, genomic, and molecular data to enable personalized medicine. However, challenges such as data quality, external validation, clinician training, and ethical concerns-like data privacy and algorithmic bias-must be addressed to ensure safe implementation. By overcoming these challenges, AI has the potential to redefine pancreaticobiliary healthcare, improving diagnostic accuracy, therapeutic outcomes, and personalized care.
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Affiliation(s)
- Catarina Cardoso Araújo
- Precision Medicine Unit, Department of Gastroenterology, São João University Hospital, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal; (C.C.A.); (J.F.); (F.M.); (M.M.); (J.M.); (M.J.A.); (T.R.); (G.M.)
- WGO Gastroenterology and Hepatology Training Center, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal
| | - Joana Frias
- Precision Medicine Unit, Department of Gastroenterology, São João University Hospital, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal; (C.C.A.); (J.F.); (F.M.); (M.M.); (J.M.); (M.J.A.); (T.R.); (G.M.)
- WGO Gastroenterology and Hepatology Training Center, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal
| | - Francisco Mendes
- Precision Medicine Unit, Department of Gastroenterology, São João University Hospital, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal; (C.C.A.); (J.F.); (F.M.); (M.M.); (J.M.); (M.J.A.); (T.R.); (G.M.)
- WGO Gastroenterology and Hepatology Training Center, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal
| | - Miguel Martins
- Precision Medicine Unit, Department of Gastroenterology, São João University Hospital, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal; (C.C.A.); (J.F.); (F.M.); (M.M.); (J.M.); (M.J.A.); (T.R.); (G.M.)
- WGO Gastroenterology and Hepatology Training Center, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal
| | - Joana Mota
- Precision Medicine Unit, Department of Gastroenterology, São João University Hospital, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal; (C.C.A.); (J.F.); (F.M.); (M.M.); (J.M.); (M.J.A.); (T.R.); (G.M.)
- WGO Gastroenterology and Hepatology Training Center, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal
| | - Maria João Almeida
- Precision Medicine Unit, Department of Gastroenterology, São João University Hospital, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal; (C.C.A.); (J.F.); (F.M.); (M.M.); (J.M.); (M.J.A.); (T.R.); (G.M.)
- WGO Gastroenterology and Hepatology Training Center, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal
| | - Tiago Ribeiro
- Precision Medicine Unit, Department of Gastroenterology, São João University Hospital, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal; (C.C.A.); (J.F.); (F.M.); (M.M.); (J.M.); (M.J.A.); (T.R.); (G.M.)
- WGO Gastroenterology and Hepatology Training Center, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal
| | - Guilherme Macedo
- Precision Medicine Unit, Department of Gastroenterology, São João University Hospital, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal; (C.C.A.); (J.F.); (F.M.); (M.M.); (J.M.); (M.J.A.); (T.R.); (G.M.)
- WGO Gastroenterology and Hepatology Training Center, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal
- Faculty of Medicine, University of Porto, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal
| | - Miguel Mascarenhas
- Precision Medicine Unit, Department of Gastroenterology, São João University Hospital, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal; (C.C.A.); (J.F.); (F.M.); (M.M.); (J.M.); (M.J.A.); (T.R.); (G.M.)
- WGO Gastroenterology and Hepatology Training Center, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal
- Faculty of Medicine, University of Porto, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal
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15
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Xu HL, Li XY, Jia MQ, Ma QP, Zhang YH, Liu FH, Qin Y, Chen YH, Li Y, Chen XY, Xu YL, Li DR, Wang DD, Huang DH, Xiao Q, Zhao YH, Gao S, Qin X, Tao T, Gong TT, Wu QJ. AI-Derived Blood Biomarkers for Ovarian Cancer Diagnosis: Systematic Review and Meta-Analysis. J Med Internet Res 2025; 27:e67922. [PMID: 40126546 PMCID: PMC11976184 DOI: 10.2196/67922] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2024] [Revised: 01/06/2025] [Accepted: 01/22/2025] [Indexed: 03/25/2025] Open
Abstract
BACKGROUND Emerging evidence underscores the potential application of artificial intelligence (AI) in discovering noninvasive blood biomarkers. However, the diagnostic value of AI-derived blood biomarkers for ovarian cancer (OC) remains inconsistent. OBJECTIVE We aimed to evaluate the research quality and the validity of AI-based blood biomarkers in OC diagnosis. METHODS A systematic search was performed in the MEDLINE, Embase, IEEE Xplore, PubMed, Web of Science, and the Cochrane Library databases. Studies examining the diagnostic accuracy of AI in discovering OC blood biomarkers were identified. The risk of bias was assessed using the Quality Assessment of Diagnostic Accuracy Studies-AI tool. Pooled sensitivity, specificity, and area under the curve (AUC) were estimated using a bivariate model for the diagnostic meta-analysis. RESULTS A total of 40 studies were ultimately included. Most (n=31, 78%) included studies were evaluated as low risk of bias. Overall, the pooled sensitivity, specificity, and AUC were 85% (95% CI 83%-87%), 91% (95% CI 90%-92%), and 0.95 (95% CI 0.92-0.96), respectively. For contingency tables with the highest accuracy, the pooled sensitivity, specificity, and AUC were 95% (95% CI 90%-97%), 97% (95% CI 95%-98%), and 0.99 (95% CI 0.98-1.00), respectively. Stratification by AI algorithms revealed higher sensitivity and specificity in studies using machine learning (sensitivity=85% and specificity=92%) compared to those using deep learning (sensitivity=77% and specificity=85%). In addition, studies using serum reported substantially higher sensitivity (94%) and specificity (96%) than those using plasma (sensitivity=83% and specificity=91%). Stratification by external validation demonstrated significantly higher specificity in studies with external validation (specificity=94%) compared to those without external validation (specificity=89%), while the reverse was observed for sensitivity (74% vs 90%). No publication bias was detected in this meta-analysis. CONCLUSIONS AI algorithms demonstrate satisfactory performance in the diagnosis of OC using blood biomarkers and are anticipated to become an effective diagnostic modality in the future, potentially avoiding unnecessary surgeries. Future research is warranted to incorporate external validation into AI diagnostic models, as well as to prioritize the adoption of deep learning methodologies. TRIAL REGISTRATION PROSPERO CRD42023481232; https://www.crd.york.ac.uk/PROSPERO/view/CRD42023481232.
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Affiliation(s)
- He-Li Xu
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
| | - Xiao-Ying Li
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
| | - Ming-Qian Jia
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
- Department of Epidemiology, School of Public Health, China Medical University, ShenYang, China
| | - Qi-Peng Ma
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
| | - Ying-Hua Zhang
- Department of Undergraduate, Shengjing Hospital of China Medical University, ShenYang, China
| | - Fang-Hua Liu
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
| | - Ying Qin
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
- Department of Epidemiology, School of Public Health, China Medical University, ShenYang, China
| | - Yu-Han Chen
- Department of Epidemiology, School of Public Health, China Medical University, ShenYang, China
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
| | - Yu Li
- Department of Epidemiology, School of Public Health, China Medical University, ShenYang, China
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
| | - Xi-Yang Chen
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
- Department of Epidemiology, School of Public Health, China Medical University, ShenYang, China
| | - Yi-Lin Xu
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
| | - Dong-Run Li
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
| | - Dong-Dong Wang
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
- Department of Epidemiology, School of Public Health, China Medical University, ShenYang, China
| | - Dong-Hui Huang
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
| | - Qian Xiao
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
| | - Yu-Hong Zhao
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
| | - Song Gao
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
| | - Xue Qin
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
| | - Tao Tao
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
| | - Ting-Ting Gong
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
| | - Qi-Jun Wu
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
- Department of Epidemiology, School of Public Health, China Medical University, ShenYang, China
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
- NHC Key Laboratory of Advanced Reproductive Medicine and Fertility (China Medical University), National Health Commission, ShenYang, China
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Shen C, Wang S, Huo R, Huang Y, Yang S. Comparison of machine learning and nomogram to predict 30-day in-hospital mortality in patients with acute myocardial infarction combined with cardiogenic shock: a retrospective study based on the eICU-CRD and MIMIC-IV databases. BMC Cardiovasc Disord 2025; 25:197. [PMID: 40108540 PMCID: PMC11924626 DOI: 10.1186/s12872-025-04628-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2024] [Accepted: 03/04/2025] [Indexed: 03/22/2025] Open
Abstract
BACKGROUND To evaluate the predictive utility of machine learning and nomogram in predicting in-hospital mortality in patients with acute myocardial infarction complicated by cardiogenic shock (AMI-CS), and to visualize the model results in order to analyze the impact of these predictors on the patients' prognosis. METHODS A retrospective analysis was conducted on 332 adult patients who were diagnosed with AMI-CS and admitted to the ICU for the first time within the eICU Collaborative Research Database (eICU-CRD). AdaBoost, XGBoost, LightGBM, Random Forest and logistic regression nomogram were developed utilizing the random forest recursive elimination (RF-RFE) and least absolute shrinkage and selection operator (LASSO) algorithms for feature selection. RESULTS Compared to the machine learning models, the nomogram demonstrated superior predictive accuracy for mortality in patients with AMI-CS, with an AUC value of 0.869 (95% CI: 0.803, 0.883) and an F1 score of 0.897 for the internal test set of nomogram, and an AUC of 0.770 (95% CI: 0.702, 0.801) and an F1 score of 0.832 for the external validation set. CONCLUSIONS Nomogram enhance the interpretability and transparency of the models, leading to more reliable prognostic predictions for AMI-CS patients. This facilitates clinicians in making precise decisions, thereby enhancing patient prognosis.
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Affiliation(s)
- Caiyu Shen
- School of Health Management, Bengbu Medical University, Bengbu, Anhui, 233030, China
| | - Shuai Wang
- School of Public Health, Bengbu Medical University, Bengbu, Anhui, 233030, China
| | - Ruiheng Huo
- School of Health Management, Bengbu Medical University, Bengbu, Anhui, 233030, China
| | - Yuli Huang
- Department of Cardiology, The First Affiliated Hospital of Bengbu Medical University, Bengbu, Anhui, 233004, China.
| | - Shu Yang
- School of Health Management, Bengbu Medical University, Bengbu, Anhui, 233030, China.
- Key Laboratory of Basic and Clinical Cardiovascular Diseases, Bengbu Medical University, Bengbu, Anhui, 233000, China.
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Lombardi R, Jozwiak M, Dellamonica J, Pasquier C. Using weak signals to predict spontaneous breathing trial success: a machine learning approach. Intensive Care Med Exp 2025; 13:34. [PMID: 40100563 PMCID: PMC11920562 DOI: 10.1186/s40635-025-00724-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2024] [Accepted: 01/29/2025] [Indexed: 03/20/2025] Open
Abstract
BACKGROUND Weaning from mechanical ventilation (MV) is a key phase in the management of intensive care unit (ICU) patient. According to the WEAN SAFE study, weaning from MV initiation is defined as the first attempt to separate a patient from the ventilator and the success is the absence of reintubation (or death) within 7 days of extubation. Mortality rates increase with the difficulty of weaning, reaching 38% for the most challenging cases. Predicting the success of weaning is difficult, due to the complexity of factors involved. The many biosignals that are measured in patients during ventilation may be considered "weak signals", a concept rarely used in medicine. The aim of this research is to investigate the performance of machine learning (ML) models based on biosignals to predict spontaneous breathing trial success (SBT) using biosignals and to identify the most important variables. METHODS This retrospective study used data from two centers (Nice University Hospital, Archet and Pasteur) collected from 232 intensive care patients who underwent MV (149 successfully and 83 unsuccessfully) between January, 2020 and April, 2023. The study focuses on the development of ML algorithms to predict the success of the spontaneous breathing trial based on a combination of discrete variables and biosignals (time series) recorded during the 24 h prior to the SBT. RESULTS For the models tested, the best results were obtained with Support Vector Classifier model: AUC-PR 0.963 (0.936-0.970, p = 0.001), AUROC 0.922 (0.871-0.940, p < 0.001). CONCLUSIONS We found that ML models are effective in predicting the success of SBT based on biosignals. Predicting weaning from mechanical ventilation thus appears to be a promising area for the application of AI, through the development of multidimensional models to analyze weak signals.
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Affiliation(s)
- Romain Lombardi
- Critical Care Unit, Pasteur 2 University Hospital, 30 Voie Romaine, 06000, Nice, France.
- Université Côte d'Azur, UR2CA, Unité de Recherche Clinique Côte d'Azur, Nice, France.
| | - Mathieu Jozwiak
- Critical Care Unit, Archet 1 University Hospital, 151 Rte de Saint-Antoine, 06200, Nice, France
- Université Côte d'Azur, UR2CA, Unité de Recherche Clinique Côte d'Azur, Nice, France
| | - Jean Dellamonica
- Critical Care Unit, Pasteur 2 University Hospital, 30 Voie Romaine, 06000, Nice, France
- Université Côte d'Azur, UR2CA, Unité de Recherche Clinique Côte d'Azur, Nice, France
| | - Claude Pasquier
- I3S, CNRS, 2000 route des Lucioles, 06900, Sophia Antipolis, France
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18
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Korkmaz Y, Bełka M, Blumenstein K. How cryptic animal vectors of fungi can influence forest health in a changing climate and how to anticipate them. Appl Microbiol Biotechnol 2025; 109:65. [PMID: 40088282 PMCID: PMC11910412 DOI: 10.1007/s00253-025-13450-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2025] [Revised: 02/26/2025] [Accepted: 03/05/2025] [Indexed: 03/17/2025]
Abstract
Fungal spores are usually dispersed by wind, water, and animal vectors. Climate change is accelerating the spread of pathogens to new regions. While well-studied vectors like bark beetles and moths contribute to pathogen transmission, other, less-recognized animal species play a crucial role at different scales. Small-scale dispersers, such as mites, rodents, squirrels, and woodpeckers, facilitate fungal spread within trees or entire forest regions. On a larger scale, birds contribute significantly to long-distance fungal dispersal, potentially aiding the establishment of invasive species across continents. These vectors remain underexplored and are often overlooked in fungal disease studies and are therefore called cryptic vectors. Understanding the full range of dispersal mechanisms is critical as climate change drive shifts in species distributions and increases vector activity. Expanding monitoring and detection tools to include these hidden carriers will improve our ability to track the distribution of fungal pathogens. Integrating targeted research, innovative technologies, and collaborative efforts across disciplines and borders is essential for enhancing disease management and mitigating fungal disease's ecological and economic impacts. KEY POINTS: • Cryptic animal vectors play a critical role in fungal spore dispersal across forests and continents. • Climate change accelerates fungal pathogen spread by altering species distributions, increasing vector activity, and facilitating long-distance dispersal. • Innovative monitoring tools, like eDNA sampling and predictive modelling, are essential to uncover cryptic vector contributions and mitigate fungal disease impacts.
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Affiliation(s)
- Yasin Korkmaz
- Faculty of Environment and Natural Resources, Chair of Pathology of Trees, University of Freiburg, Freiburg, Germany
| | - Marta Bełka
- Faculty of Forestry and Wood Technology, Forest Entomology and Pathology Department, Poznań University of Life Sciences, Poznań, Poland
| | - Kathrin Blumenstein
- Faculty of Environment and Natural Resources, Chair of Pathology of Trees, University of Freiburg, Freiburg, Germany.
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dos Santos RR, Marumo MB, Eckeli AL, Salgado HC, Silva LEV, Tinós R, Fazan R. The use of heart rate variability, oxygen saturation, and anthropometric data with machine learning to predict the presence and severity of obstructive sleep apnea. Front Cardiovasc Med 2025; 12:1389402. [PMID: 40161388 PMCID: PMC11949982 DOI: 10.3389/fcvm.2025.1389402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 03/03/2025] [Indexed: 04/02/2025] Open
Abstract
Introduction Obstructive sleep apnea (OSA) is a prevalent sleep disorder with a high rate of undiagnosed patients, primarily due to the complexity of its diagnosis made by polysomnography (PSG). Considering the severe comorbidities associated with OSA, especially in the cardiovascular system, the development of early screening tools for this disease is imperative. Heart rate variability (HRV) is a simple and non-invasive approach used as a probe to evaluate cardiac autonomic modulation, with a variety of newly developed indices lacking studies with OSA patients. Objectives We aimed to evaluate numerous HRV indices, derived from linear but mainly nonlinear indices, combined or not with oxygen saturation indices, for detecting the presence and severity of OSA using machine learning models. Methods ECG waveforms were collected from 291 PSG recordings to calculate 34 HRV indices. Minimum oxygen saturation value during sleep (SatMin), the percentage of total sleep time the patient spent with oxygen saturation below 90% (T90), and patient anthropometric data were also considered as inputs to the models. The Apnea-Hypopnea Index (AHI) was used to categorize into severity classes of OSA (normal, mild, moderate, severe) to train multiclass or binary (normal-to-mild and moderate-to-severe) classification models, using the Random Forest (RF) algorithm. Since the OSA severity groups were unbalanced, we used the Synthetic Minority Over-sampling Technique (SMOTE) to oversample the minority classes. Results Multiclass models achieved a mean area under the ROC curve (AUROC) of 0.92 and 0.86 in classifying normal individuals and severe OSA patients, respectively, when using all attributes. When the groups were dichotomized into normal-to-mild OSA vs. moderate-to-severe OSA, an AUROC of 0.83 was obtained. As revealed by RF, the importance of features indicates that all feature modalities (HRV, SpO2, and anthropometric variables) contribute to the top 10 ranks. Conclusion The present study demonstrates the feasibility of using classification models to detect the presence and severity of OSA using these indices. Our findings have the potential to contribute to the development of rapid screening tools aimed at assisting individuals affected by this condition, to expedite diagnosis and initiate timely treatment.
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Affiliation(s)
- Rafael Rodrigues dos Santos
- Department of Physiology, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirão Preto, Brazil
| | - Matheo Bellini Marumo
- Department of Computing and Mathematics, Faculty of Philosophy, Sciences and Letters, University of Sao Paulo, Ribeirão Preto, Brazil
| | - Alan Luiz Eckeli
- Department of Neuroscience and Behavior Sciences, Division of Neurology, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirão Preto, Brazil
| | - Helio Cesar Salgado
- Department of Physiology, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirão Preto, Brazil
| | - Luiz Eduardo Virgílio Silva
- Department of Biomedical and Health Informatics, Children’s Hospital of Philadelphia, Philadelphia, PA, United States
| | - Renato Tinós
- Department of Computing and Mathematics, Faculty of Philosophy, Sciences and Letters, University of Sao Paulo, Ribeirão Preto, Brazil
| | - Rubens Fazan
- Department of Physiology, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirão Preto, Brazil
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Li N, Zhang Y, Zhang Q, Jin H, Han M, Guo J, Zhang Y. Machine learning reveals glycolytic key gene in gastric cancer prognosis. Sci Rep 2025; 15:8688. [PMID: 40082583 PMCID: PMC11906761 DOI: 10.1038/s41598-025-93512-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2024] [Accepted: 03/07/2025] [Indexed: 03/16/2025] Open
Abstract
Glycolysis is recognized as a central metabolic pathway in the neoplastic evolution of gastric cancer, exerting profound effects on the tumor microenvironment and the neoplastic growth trajectory. However, the identification of key glycolytic genes that significantly affect gastric cancer prognosis remains underexplored. In this work, five machine-learning algorithms were used to elucidate the intimate association between the glycolysis-associated gene phosphofructokinase fructose-bisphosphate 3 (PFKFB3) and the prognosis of gastric cancer patients. Validation across multiple independent datasets confirmed the prognostic significance of PFKFB3. Further, we delved into the functional implications of PFKFB3 in modulating immune responses and biological processes within gastric cancer patients, as well as its broader relevance across multiple cancer types. Results underscore the potential of PFKFB3 as a prognostic biomarker and therapeutic target in gastric cancer. Our project can be found at https://github.com/PiPiNam/ML-GCP .
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Affiliation(s)
- Nan Li
- China Academy of Electronics and Information Technology, National Engineering Research Center for Public Safety Risk Perception and Control by Big Data (RPP), Beijing, China
| | - Yuzhe Zhang
- The First Laboratory of Cancer Institute, The First Hospital of China Medical University, Shenyang, China
| | - Qianyue Zhang
- China Academy of Electronics and Information Technology, National Engineering Research Center for Public Safety Risk Perception and Control by Big Data (RPP), Beijing, China
| | - Hao Jin
- China Academy of Electronics and Information Technology, National Engineering Research Center for Public Safety Risk Perception and Control by Big Data (RPP), Beijing, China
| | - Mengfei Han
- China Academy of Electronics and Information Technology, National Engineering Research Center for Public Safety Risk Perception and Control by Big Data (RPP), Beijing, China
| | - Junhan Guo
- Center for Reproductive Medicine, Henan Key Laboratory of Reproduction and Genetics, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China
| | - Ye Zhang
- The First Laboratory of Cancer Institute, The First Hospital of China Medical University, Shenyang, China.
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21
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Dai L, Yin J, Xin X, Yao C, Tang Y, Xia X, Chen Y, Lai S, Lu G, Huang J, Zhang P, Li J, Chen X, Zhong X. An interpretable machine learning model based on computed tomography radiomics for predicting programmed death ligand 1 expression status in gastric cancer. Cancer Imaging 2025; 25:31. [PMID: 40075494 PMCID: PMC11905525 DOI: 10.1186/s40644-025-00855-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2024] [Accepted: 03/02/2025] [Indexed: 03/14/2025] Open
Abstract
BACKGROUND Programmed death ligand 1 (PD-L1) expression status, closely related to immunotherapy outcomes, is a reliable biomarker for screening patients who may benefit from immunotherapy. Here, we developed and validated an interpretable machine learning (ML) model based on contrast-enhanced computed tomography (CECT) radiomics for preoperatively predicting PD-L1 expression status in patients with gastric cancer (GC). METHODS We retrospectively recruited 285 GC patients who underwent CECT and PD-L1 detection from two medical centers. A PD-L1 combined positive score (CPS) of ≥ 5 was considered to indicate a high PD-L1 expression status. Patients from center 1 were divided into training (n = 143) and validation sets (n = 62), and patients from center 2 were considered a test set (n = 80). Radiomics features were extracted from venous-phase CT images. After feature reduction and selection, 11 ML algorithms were employed to develop predictive models, and their performance in predicting PD-L1 expression status was evaluated using areas under receiver operating characteristic curves (AUCs). SHapley Additive exPlanations (SHAP) were used to interpret the optimal model and visualize the decision-making process for a single individual. RESULTS Nine features significantly associated with PD-L1 expression status were ultimately selected to construct the predictive model. The light gradient-boosting machine (LGBM) model demonstrated the best performance for PD-L1 high expression status prediction in the training, validation, and test sets, with AUCs of 0.841(95% CI: 0.773, 0.908), 0.834 (95% CI:0.729, 0.939), and 0.822 (95% CI: 0.718, 0.926), respectively. The SHAP summary and bar plots illustrated that a feature's value affected the feature's impact attributed to the model. The SHAP waterfall plots were used to visualize the decision-making process for a single individual. CONCLUSION Our CT radiomics-based LGBM model may aid in preoperatively predicting PD-L1 expression status in GC patients, and the SHAP method may improve the interpretability of this model.
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Affiliation(s)
- Lihuan Dai
- Department of Medical Imaging, Guangzhou Institute of Cancer Research, the Affiliated Cancer Hospital, Guangzhou Medical University, Guangzhou, 510095, China
| | - Jinxue Yin
- Department of Medical Imaging, Guangzhou Institute of Cancer Research, the Affiliated Cancer Hospital, Guangzhou Medical University, Guangzhou, 510095, China
| | - Xin Xin
- Department of Medical Imaging, Guangzhou Institute of Cancer Research, the Affiliated Cancer Hospital, Guangzhou Medical University, Guangzhou, 510095, China
| | - Chun Yao
- Department of Radiology, Meizhou People's Hospital, Mei Zhou, 514031, China
| | - Yongfang Tang
- Department of Medical Imaging, Guangzhou Institute of Cancer Research, the Affiliated Cancer Hospital, Guangzhou Medical University, Guangzhou, 510095, China
| | - Xiaohong Xia
- Department of Pathology, Guangzhou Institute of Cancer Research, the Affiliated Cancer Hospital, Guangzhou Medical University, Guangzhou, 510095, China
| | - Yuanlin Chen
- Department of Pathology, Guangzhou Institute of Cancer Research, the Affiliated Cancer Hospital, Guangzhou Medical University, Guangzhou, 510095, China
| | - Shuying Lai
- Department of Radiology, Meizhou People's Hospital, Mei Zhou, 514031, China
| | - Guoliang Lu
- Department of Medical Imaging, Guangzhou Institute of Cancer Research, the Affiliated Cancer Hospital, Guangzhou Medical University, Guangzhou, 510095, China
| | - Jie Huang
- Department of Medical Imaging, Guangzhou Institute of Cancer Research, the Affiliated Cancer Hospital, Guangzhou Medical University, Guangzhou, 510095, China
| | - Purong Zhang
- Department of Medical Imaging, Guangzhou Institute of Cancer Research, the Affiliated Cancer Hospital, Guangzhou Medical University, Guangzhou, 510095, China
| | - Jiansheng Li
- Department of Medical Imaging, Guangzhou Institute of Cancer Research, the Affiliated Cancer Hospital, Guangzhou Medical University, Guangzhou, 510095, China.
| | - Xiangguang Chen
- Department of Radiology, Meizhou People's Hospital, Mei Zhou, 514031, China.
| | - Xi Zhong
- Department of Medical Imaging, Guangzhou Institute of Cancer Research, the Affiliated Cancer Hospital, Guangzhou Medical University, Guangzhou, 510095, China.
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22
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Araujo-Moura K, Souza L, de Oliveira TA, Rocha MS, De Moraes ACF, Chiavegatto Filho A. Prediction of Hypertension in the Pediatric Population Using Machine Learning and Transfer Learning: A Multicentric Analysis of the SAYCARE Study. Int J Public Health 2025; 70:1607944. [PMID: 40145015 PMCID: PMC11937837 DOI: 10.3389/ijph.2025.1607944] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2024] [Accepted: 02/25/2025] [Indexed: 03/28/2025] Open
Abstract
Objective To develop a machine learning (ML) model utilizing transfer learning (TL) techniques to predict hypertension in children and adolescents across South America. Methods Data from two cohorts (children and adolescents) in seven South American cities were analyzed. A TL strategy was implemented by transferring knowledge from a CatBoost model trained on the children's sample and adapting it to the adolescent sample. Model performance was evaluated using standard metrics. Results Among children, the prevalence of normal blood pressure was 88.9% (301 participants), while 14.1% (50 participants) had elevated blood pressure (EBP). In the adolescent group, the prevalence of normal blood pressure was 92.5% (284 participants), with 7.5% (23 participants) presenting with EBP. Random Forest, XGBoost, and LightGBM achieved high accuracy (0.90) for children, with XGBoost and LightGBM demonstrating superior recall (0.50) and AUC-ROC (0.74). For adolescents, models without TL showed poor performance, with accuracy and recall values remaining low and AUC-ROC ranging from 0.46 to 0.56. After applying TL, model performance improved significantly, with CatBoost achieving an AUC-ROC of 0.82, accuracy of 1.0, and recall of 0.18. Conclusion Soft drinks, filled cookies, and chips were key dietary predictors of elevated blood pressure, with higher intake in adolescents. Machine learning with transfer learning effectively identified these risks, emphasizing the need for early dietary interventions to prevent hypertension and support cardiovascular health in pediatric populations.
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Affiliation(s)
- Keisyanne Araujo-Moura
- Department of Epidemiology, School of Public Health, University of São Paulo, São Paulo, Brazil
| | - Letícia Souza
- Department of Epidemiology, School of Public Health, University of São Paulo, São Paulo, Brazil
| | | | - Mateus Silva Rocha
- Department of Statistic, State University of Paraíba, Campina Grande, Paraíba, Brazil
| | - Augusto César Ferreira De Moraes
- School of Public Health in Austin, Department of Epidemiology, Michael and Susan Dell Center for Healthy Living, Texas Physical Activity Research Collaborative (Texas PARC), University of Texas Health Science Center at Houston, Houston, TX, United States
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23
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Yang G, Wang G, Wan L, Wang X, He Y. Utilizing SMOTE-TomekLink and machine learning to construct a predictive model for elderly medical and daily care services demand. Sci Rep 2025; 15:8446. [PMID: 40069309 PMCID: PMC11897399 DOI: 10.1038/s41598-025-92722-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2024] [Accepted: 03/03/2025] [Indexed: 03/15/2025] Open
Abstract
This study aims to construct a prediction model for the demand for medical and daily care services of the elderly and to explore the factors that affect the demand for medical and daily care services of the elderly. In this study, a questionnaire survey on the demand for medical and daily care services of 1291 elderly was conducted using multi-stage stratified whole cluster random sampling. SPSS21.0 statistical analysis software was used to describe the basic data of the elderly statistically, and univariate analysis was used to screen variables for model construction and binary logistic regression analysis. The acquired dataset has class imbalance, and to handle this issue, Synthetic Minority Over Sampling Technique with TomekLink (SMOTE-TomekLink) was adopted to resample the dataset for class-balancing. To improve computational efficiency, we used three algorithms to develop prediction models, including Random Forest (RF), Gradient Boosting Decision Tree (GBDT), and Light Gradient Boosting Machine (LightGBM) algorithms. The performance of each model was measured, and the performance of the prediction model was obtained using the following performance metrics: accuracy (ACC), recall (R), precision (P), F1-score, and area under the receiver operating characteristic (AUC). The prediction models for the medical and daily care services demand of the elderly were developed and validated using 12 and 13 key features, respectively. The LightGBM algorithm emerged as the superior prediction model for estimating the service needs of the elderly. For the medical service demand prediction model, LightGBM achieved an AUC of 0.910 and F1-score of 0.841. In the daily care services demand prediction model, LightGBM demonstrated an AUC of 0.906 and an F1-score of 0.819. In the LightGBM model, the analysis of feature importance indicates that the number of chronic diseases, education level, and financial sources emerge as the most significant predictors for the demand of healthcare services, encompassing both medical and daily care services. Based on questionnaire information combined with feature selection, unbalanced data processing and machine learning methods, this study constructed a machine learning model for predicting the demand for medical and daily care services for the elderly, and analyzed the influencing factors of the demand for medical and daily care services for the elderly, providing a reference for the construction and verification of future prediction models for the demand for medical and daily care services for the elderly.
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Affiliation(s)
- Guangmei Yang
- The Affiliated Encephalopathy Hospital of Zhengzhou University, Zhumadian, Henan, China
- Zhengzhou University, Zhengzhou, Henan, China
| | - Guangdong Wang
- Northwest Agriculture and Forestry University College of Natural Resources and Environment, Xianyang, Shaanxi, China
| | - Leping Wan
- Zhengzhou University, Zhengzhou, Henan, China
- Wuhan University, Wuhan, Hubei Province, China
| | - Xinle Wang
- Zhengzhou University, Zhengzhou, Henan, China
| | - Yan He
- Hainan Medical University, Haikou, Hainan, China.
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Yang H, Xiu J, Yan W, Liu K, Cui H, Wang Z, He Q, Gao Y, Han W. Large Language Models as Tools for Molecular Toxicity Prediction: AI Insights into Cardiotoxicity. J Chem Inf Model 2025; 65:2268-2282. [PMID: 39982968 DOI: 10.1021/acs.jcim.4c01371] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2025]
Abstract
The importance of drug toxicity assessment lies in ensuring the safety and efficacy of the pharmaceutical compounds. Predicting toxicity is crucial in drug development and risk assessment. This study compares the performance of GPT-4 and GPT-4o with traditional deep-learning and machine-learning models, WeaveGNN, MorganFP-MLP, SVC, and KNN, in predicting molecular toxicity, focusing on bone, neuro, and reproductive toxicity. The results indicate that GPT-4 is comparable to deep-learning and machine-learning models in certain areas. We utilized GPT-4 combined with molecular docking techniques to study the cardiotoxicity of three specific targets, examining traditional Chinese medicinal materials listed as both food and medicine. This approach aimed to explore the potential cardiotoxicity and mechanisms of action. The study found that components in Black Sesame, Ginger, Perilla, Sichuan Pagoda Tree Fruit, Galangal, Turmeric, Licorice, Chinese Yam, Amla, and Nutmeg exhibit toxic effects on cardiac target Cav1.2. The docking results indicated significant binding affinities, supporting the hypothesis of potential cardiotoxic effects.This research highlights the potential of ChatGPT in predicting molecular properties and its significance in medicinal chemistry, demonstrating its facilitation of a new research paradigm: with a data set, high-accuracy learning models can be generated without requiring computational knowledge or coding skills, making it accessible and easy to use.
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Affiliation(s)
- Hengzheng Yang
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
- Edmond H. Fischer Signal Transduction Laboratory, School of Life Sciences, Jilin University, Changchun 130012, China
| | - Jian Xiu
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
| | - Weiqi Yan
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
| | - Kaifeng Liu
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
| | - Huizi Cui
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
- Edmond H. Fischer Signal Transduction Laboratory, School of Life Sciences, Jilin University, Changchun 130012, China
| | - Zhibang Wang
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
| | - Qizheng He
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
| | - Yilin Gao
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
| | - Weiwei Han
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
- Edmond H. Fischer Signal Transduction Laboratory, School of Life Sciences, Jilin University, Changchun 130012, China
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Sullivan BA, Grundmeier RW. Machine Learning Models as Early Warning Systems for Neonatal Infection. Clin Perinatol 2025; 52:167-183. [PMID: 39892951 DOI: 10.1016/j.clp.2024.10.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2025]
Abstract
Neonatal infections pose a significant threat to the health of newborns. Associated morbidity and mortality risks underscore the urgency of prompt diagnosis and treatment with appropriate empiric antibiotics. Delay in treatment can be fatal; thus, early detection improves outcomes. However, diagnosing early is a challenge as signs and symptoms of neonatal infection are non-specific and overlap with non-infectious conditions. Machine learning (ML) offers promise in early detection, utilizing various data sources and methodologies. However, ML models require rigorous validation and consideration of various challenges, including false alarms and user acceptance requiring careful integration and ongoing evaluation for successful implementation.
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Affiliation(s)
- Brynne A Sullivan
- Division of Neonatology, Department of Pediatrics, University of Virginia School of Medicine, 1215 Lee Street, P.O. Box 800386, Charlottesville, VA 22947, USA.
| | - Robert W Grundmeier
- Department of Pediatrics, Perelman School of Medicine at the University of Pennsylvania; Division of Clinical Informatics, Department of Biomedical and Health Informatics, The Children's Hospital of Philadelphia, 3400 Civic Center Boulevard Ste 10, Philadelphia, PA 19104, USA
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Xia W, Tan Y, Mei B, Zhou Y, Tan J, Pubu Z, Sang B, Jiang T. Application of Interpretable Machine Learning Models to Predict the Risk Factors of HBV-Related Liver Cirrhosis in CHB Patients Based on Routine Clinical Data: A Retrospective Cohort Study. J Med Virol 2025; 97:e70302. [PMID: 40105097 DOI: 10.1002/jmv.70302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2024] [Revised: 12/12/2024] [Accepted: 03/09/2025] [Indexed: 03/20/2025]
Abstract
Chronic hepatitis B (CHB) infection represents a significant global public health issue, often leading to hepatitis B virus (HBV)-related liver cirrhosis (HBV-LC) with poor prognoses. Early identification of HBV-LC risk is essential for timely intervention. This study develops and compares nine machine learning (ML) models to predict HBV-LC risk in CHB patients using routine clinical and laboratory data. A retrospective analysis was conducted involving 777 CHB patients, with 50.45% (392/777) progressing to HBV-LC. Admission data consisted of 52 clinical and laboratory variables, with missing values addressed using multiple imputation. Feature selection utilized Least Absolute Shrinkage and Selection Operator (LASSO) regression and the Boruta algorithm, identifying 24 key variables. The evaluated ML models included XGBoost, logistic regression (LR), LightGBM, random forest (RF), AdaBoost, Gaussian naive Bayes (GNB), multilayer perceptron (MLP), support vector machine (SVM), and k-nearest neighbors (KNN). The data set was partitioned into an 80% training set (n = 621) and a 20% independent testing set (n = 156). Cross-validation (CV) facilitated hyperparameter tuning and internal validation of the optimal model. Performance metrics included the area under the receiver operating characteristic curve (AUC), Brier score, accuracy, sensitivity, specificity, and F1 score. The RF model demonstrated superior performance, with AUCs of 0.992 (training) and 0.907 (validation), while the reconstructed model achieved AUCs of 0.944 (training) and 0.945 (validation), maintaining an AUC of 0.863 in the testing set. Calibration curves confirmed a strong alignment between observed and predicted probabilities. Decision curve analysis indicated that the RF model provided the highest net benefit across threshold probabilities. The SHAP algorithm identified RPR, PLT, HBV DNA, ALT, and TBA as critical predictors. This interpretable ML model enhances early HBV-LC prediction and supports clinical decision-making in resource-limited settings.
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Affiliation(s)
- Wei Xia
- Department of Laboratory Medicine, Jingzhou Hospital Affiliated to Yangtze University, Jingzhou, Hubei, People's Republic of China
- Center for Scientific Research and Medical Transformation, Jingzhou Hospital Affiliated to Yangtze University, Hubei, People's Republic of China
| | - Yafeng Tan
- Department of Laboratory Medicine, Jingzhou Hospital Affiliated to Yangtze University, Jingzhou, Hubei, People's Republic of China
| | - Bing Mei
- Department of Laboratory Medicine, Jingzhou Hospital Affiliated to Yangtze University, Jingzhou, Hubei, People's Republic of China
| | - Yizheng Zhou
- Department of Laboratory Medicine, Jingzhou Hospital Affiliated to Yangtze University, Jingzhou, Hubei, People's Republic of China
- Center for Scientific Research and Medical Transformation, Jingzhou Hospital Affiliated to Yangtze University, Hubei, People's Republic of China
| | - Jufang Tan
- Department of pediatrics, Jingzhou Hospital Affiliated to Yangtze University, Hubei, People's Republic of China
| | - Zhaxi Pubu
- Department of pediatrics, Lozha County People's Hospital, Shannan, Xizang Autonomous Region, People's Republic of China
| | - Bu Sang
- Department of Laboratory Medicine, Lozha County People's Hospital, Shannan, Xizang Autonomous Region, Shannan, People's Republic of China
| | - Tao Jiang
- Department of Laboratory Medicine, Jingzhou Hospital Affiliated to Yangtze University, Jingzhou, Hubei, People's Republic of China
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Zheng Z, Qiao X, Yin J, Kong J, Han W, Qin J, Meng F, Tian G, Feng X. Advancements in omics technologies: Molecular mechanisms of acute lung injury and acute respiratory distress syndrome (Review). Int J Mol Med 2025; 55:38. [PMID: 39749711 PMCID: PMC11722059 DOI: 10.3892/ijmm.2024.5479] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2024] [Accepted: 12/09/2024] [Indexed: 01/04/2025] Open
Abstract
Acute lung injury (ALI)/acute respiratory distress syndrome (ARDS) is an inflammatory response arising from lung and systemic injury with diverse causes and associated with high rates of morbidity and mortality. To date, no fully effective pharmacological therapies have been established and the relevant underlying mechanisms warrant elucidation, which may be facilitated by multi‑omics technology. The present review summarizes the application of multi‑omics technology in identifying novel diagnostic markers and therapeutic strategies of ALI/ARDS as well as its pathogenesis.
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Affiliation(s)
- Zhihuan Zheng
- Shandong Provincial Key Laboratory for Rheumatic Disease and Translational Medicine, The First Affiliated Hospital of Shandong First Medical University and Shandong Provincial Qianfoshan Hospital, Jinan, Shandong 250014, P.R. China
- Department of Immunology, School of Clinical and Basic Medical Sciences, Shandong First Medical University and Shandong Academy of Medical Sciences, Jinan, Shandong 250117, P.R. China
| | - Xinyu Qiao
- Shandong Provincial Key Laboratory for Rheumatic Disease and Translational Medicine, The First Affiliated Hospital of Shandong First Medical University and Shandong Provincial Qianfoshan Hospital, Jinan, Shandong 250014, P.R. China
- Department of Immunology, School of Clinical and Basic Medical Sciences, Shandong First Medical University and Shandong Academy of Medical Sciences, Jinan, Shandong 250117, P.R. China
| | - Junhao Yin
- Shandong Provincial Key Laboratory for Rheumatic Disease and Translational Medicine, The First Affiliated Hospital of Shandong First Medical University and Shandong Provincial Qianfoshan Hospital, Jinan, Shandong 250014, P.R. China
- Department of Immunology, School of Clinical and Basic Medical Sciences, Shandong First Medical University and Shandong Academy of Medical Sciences, Jinan, Shandong 250117, P.R. China
| | - Junjie Kong
- Shandong Provincial Key Laboratory for Rheumatic Disease and Translational Medicine, The First Affiliated Hospital of Shandong First Medical University and Shandong Provincial Qianfoshan Hospital, Jinan, Shandong 250014, P.R. China
- Department of Immunology, School of Clinical and Basic Medical Sciences, Shandong First Medical University and Shandong Academy of Medical Sciences, Jinan, Shandong 250117, P.R. China
| | - Wanqing Han
- Shandong Provincial Key Laboratory for Rheumatic Disease and Translational Medicine, The First Affiliated Hospital of Shandong First Medical University and Shandong Provincial Qianfoshan Hospital, Jinan, Shandong 250014, P.R. China
- Department of Immunology, School of Clinical and Basic Medical Sciences, Shandong First Medical University and Shandong Academy of Medical Sciences, Jinan, Shandong 250117, P.R. China
| | - Jing Qin
- Department of Immunology, School of Clinical and Basic Medical Sciences, Shandong First Medical University and Shandong Academy of Medical Sciences, Jinan, Shandong 250117, P.R. China
| | - Fanda Meng
- Department of Immunology, School of Clinical and Basic Medical Sciences, Shandong First Medical University and Shandong Academy of Medical Sciences, Jinan, Shandong 250117, P.R. China
| | - Ge Tian
- School of Life Sciences, Shandong First Medical University & Shandong Academy of Medical Sciences, Taian, Shandong 271000, P.R. China
| | - Xiujing Feng
- Shandong Provincial Key Laboratory for Rheumatic Disease and Translational Medicine, The First Affiliated Hospital of Shandong First Medical University and Shandong Provincial Qianfoshan Hospital, Jinan, Shandong 250014, P.R. China
- Department of Immunology, School of Clinical and Basic Medical Sciences, Shandong First Medical University and Shandong Academy of Medical Sciences, Jinan, Shandong 250117, P.R. China
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Wang Q, Ge Q, Wang J, Wu Y, Qi X. Diagnostic value of TRIM22 in diabetic kidney disease and its mechanism. Endocrine 2025; 87:959-977. [PMID: 39509016 DOI: 10.1007/s12020-024-04089-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/20/2024] [Accepted: 10/26/2024] [Indexed: 11/15/2024]
Abstract
PURPOSE Diabetic kidney disease (DKD) is the primary reason of chronic kidney disease. Our objective was to discover potential autophagy-related biomarkers of tubulointerstitial injury in DKD and assess their clinical value. METHODS We retrieved four datasets (GSE104954, GSE30122, GSE30529, and GSE99340) of renal tubule samples from Gene Expression Omnibus (GEO) and used two algorithms (LASSO and SVM-RFE) to screen for autophagy-related differentially expressed genes (ARDEGs) in DKD. Tripartite motif containing 22 (TRIM22) was identified for subsequent validation. Validation of TRIM22 and autophagic indicators expression in clinical samples and HK-2 cells stimulated by high glucose using immunohistochemistry, immunofluorescence, and western blot. RESULTS We identified four ARDEGs (TRIM22, PLK2, HTR2B, and FAS) using a diagnostic gene model. ROC curves further confirmed that TRIM22 had the best diagnostic efficacy for DKD. Both clinical samples and HK-2 cells stimulated by high glucose showed high protein expression of TRIM22. The correlation analysis revealed that TRIM22 correlates with SQSTM1, NGAL, and some clinical and pathological indicators in patients with DKD. CONCLUSION We identified TRIM22 as a potential diagnostic biomarker for DKD, revealing its high diagnostic value in patients with DKD with moderate-to-severe interstitial fibrosis and tubular atrophy (IFTA). TRIM22 is involved in tubulointerstitial injury and autophagy dysregulation in DKD.
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Affiliation(s)
- Qianhui Wang
- Department of Nephropathy, the First Affiliated Hospital of Anhui Medical University, Hefei, Anhui, China
| | - Qingmiao Ge
- Department of Nephropathy, the First Affiliated Hospital of Anhui Medical University, Hefei, Anhui, China
| | - Jingjing Wang
- Department of Nephropathy, the First Affiliated Hospital of Anhui Medical University, Hefei, Anhui, China
| | - Yonggui Wu
- Department of Nephropathy, the First Affiliated Hospital of Anhui Medical University, Hefei, Anhui, China.
- Center for Scientific Research of Anhui Medical University, Hefei, Anhui, China.
| | - Xiangming Qi
- Department of Nephropathy, the First Affiliated Hospital of Anhui Medical University, Hefei, Anhui, China.
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Chen P, Xiong H, Cao J, Cui M, Hou J, Guo Z. Predicting postoperative adhesive small bowel obstruction in infants under 3 months with intestinal malrotation: a random forest approach. J Pediatr (Rio J) 2025; 101:282-289. [PMID: 39765335 PMCID: PMC11889664 DOI: 10.1016/j.jped.2024.11.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/26/2023] [Revised: 11/27/2024] [Accepted: 11/27/2024] [Indexed: 01/24/2025] Open
Abstract
OBJECTIVE This study aimed to develop a predictive model using a random forest algorithm to determine the likelihood of postoperative adhesive small bowel obstruction (ASBO) in infants under 3 months with intestinal malrotation. METHODS A machine learning model was used to predict postoperative adhesive small bowel obstruction using comprehensive clinical data extracted from 107 patients with a follow-up of at least 24 months. The Boruta algorithm was used for selecting clinical features, and nested cross-validation tuned and selected hyper-parameters for the random forest model. The model's performance was validated with 1000 bootstrap samples and assessed using receiver operating characteristic (ROC) analysis, the area under the ROC curve (AUC), sensitivity, specificity, precision, and F1 score. RESULTS The random forest model demonstrated high diagnostic accuracy with an AUC of 0.960. Significant predictors of ASBO included pre-operative white blood cell count (pre-WBC), mechanical ventilation (MV) duration, surgery duration, and post-operative albumin levels (post-ALB). Partial dependence plots showed non-linear relationships and threshold effects for these variables. The model achieved high sensitivity (0.805) and specificity (0.952), along with excellent precision (0.809) and a robust F1 score (0.799), indicating balanced recall and precision performance. CONCLUSION This study presents a machine learning model to accurately predict postoperative ASBO in infants with intestinal malrotation. Demonstrating high accuracy and robustness, this model shows great promise for enhancing clinical decision-making and patient outcomes in pediatric surgery.
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Affiliation(s)
- Pengfei Chen
- Department of General Surgery and Neonatal Surgery, Liangjiang Wing, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatrics, Chongqing, China
| | - Haiyi Xiong
- Department of Pediatrics, Women and Children's Hospital of Chongqing Medical University, Department of Pediatrics, Chongqing Health Center for Women and Children, Chongqing, China
| | - Jian Cao
- Department of General Surgery and Neonatal Surgery, Liangjiang Wing, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatrics, Chongqing, China
| | - Mengying Cui
- Department of General Surgery and Neonatal Surgery, Liangjiang Wing, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatrics, Chongqing, China
| | - Jinfeng Hou
- Department of General Surgery and Neonatal Surgery, Liangjiang Wing, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatrics, Chongqing, China
| | - Zhenhua Guo
- Department of General Surgery and Neonatal Surgery, Liangjiang Wing, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatrics, Chongqing, China.
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30
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Guo Y, Wang F, Ma S, Mao Z, Zhao S, Sui L, Jiao C, Lu R, Zhu X, Pan X. Relationship between atherogenic index of plasma and length of stay in critically ill patients with atherosclerotic cardiovascular disease: a retrospective cohort study and predictive modeling based on machine learning. Cardiovasc Diabetol 2025; 24:95. [PMID: 40022165 PMCID: PMC11871731 DOI: 10.1186/s12933-025-02654-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/13/2025] [Accepted: 02/18/2025] [Indexed: 03/03/2025] Open
Abstract
BACKGROUND The atherogenic index of plasma (AIP) is considered an important marker of atherosclerosis and cardiovascular risk. However, its potential role in predicting length of stay (LOS), especially in patients with atherosclerotic cardiovascular disease (ASCVD), remains to be explored. We investigated the effect of AIP on hospital LOS in critically ill ASCVD patients and explored the risk factors affecting LOS in conjunction with machine learning. METHODS Using data from the Medical Information Mart for Intensive Care (MIMIC)-IV. AIP was calculated as the logarithmic ratio of TG to HDL-C, and patients were stratified into four groups based on AIP values. We investigated the association between AIP and two key clinical outcomes: ICU LOS and total hospital LOS. Multivariate logistic regression models were used to evaluate these associations, while restricted cubic spline (RCS) regressions assessed potential nonlinear relationships. Additionally, machine learning (ML) techniques, including logistic regression (LR), decision tree (DT), random forest (RF), extreme gradient boosting (XGB), and light gradient boosting machine (LGB), were applied, with the Shapley additive explanation (SHAP) method used to determine feature importance. RESULTS The study enrolled a total of 2423 patients with critically ill ASCVD, predominantly male (54.91%), and revealed that higher AIP values were independently associated with longer ICU and hospital stays. Specifically, for each unit increase in AIP, the odds of prolonged ICU and hospital stays were significantly higher, with adjusted odds ratios (OR) of 1.42 (95% CI, 1.11-1.81; P = 0.006) and 1.73 (95% CI, 1.34-2.24; P < 0.001), respectively. The RCS regression demonstrated a linear relationship between increasing AIP and both ICU LOS and hospital LOS. ML models, specifically LGB (ROC:0.740) and LR (ROC:0.832) demonstrated superior predictive accuracy for these endpoints, identifying AIP as a vital component of hospitalization duration. CONCLUSION AIP is a significant predictor of ICU and hospital LOS in patients with critically ill ASCVD. AIP could serve as an early prognostic tool for guiding clinical decision-making and managing patient outcomes.
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Affiliation(s)
- Yu Guo
- Department of Neurology, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Fuxu Wang
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Shiyin Ma
- Department of Neurology, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Zhi Mao
- Department of Critical Care Medicine, The First Medical Center of PLA General Hospital, Beijing, China
| | - Shuangmei Zhao
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Liutao Sui
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Chucheng Jiao
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Ruogu Lu
- Medical Innovation Research Department, Chinese PLA General Hospital, Beijing, China.
| | - Xiaoyan Zhu
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao, China.
| | - Xudong Pan
- Department of Neurology, The Affiliated Hospital of Qingdao University, Qingdao, China.
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Huang YH, Yang ML, Li YZ, Chen YF, Cai C, Huang J, Wang Y, Li TQ, Ye QY. Differentiating idiopathic Parkinson's disease from multiple system atrophy-P using brain MRI-based radiomics: a multicenter study. Ther Adv Neurol Disord 2025; 18:17562864251318865. [PMID: 40018083 PMCID: PMC11866387 DOI: 10.1177/17562864251318865] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2024] [Accepted: 01/13/2025] [Indexed: 03/01/2025] Open
Abstract
Background Differentiating idiopathic Parkinson's disease (IPD) from multiple system atrophy-parkinsonian type (MSA-P) is essential for optimizing patient care and prognosis, given the differences in disease progression and treatment response. Objectives This study aimed to develop and evaluate a radiomics-based model using magnetic resonance imaging (MRI)-derived features to distinguish IPD from MSA-P. Design A multicenter retrospective study. Methods A multicenter retrospective study was conducted with 287 patients (186 IPD and 101 MSA-P) who underwent brain MRI. Radiomic features were extracted from T1-weighted imaging and T2-weighted imaging sequences, and various machine learning classifiers were applied, including logistic regression, support vector machine (SVM), ExtraTrees, extreme gradient boosting, and Light Gradient Boosting Machine. Model performance was assessed using area under the curve (AUC), accuracy, sensitivity, and specificity. A nomogram combining clinical and radiomic features was also evaluated. Results The SVM model, selected as the base for the Rad-signature, achieved the best diagnostic performance, with AUCs of 0.885 and 0.900 in the training and testing cohorts, respectively. The Rad-signature significantly outperformed clinical-only models in distinguishing IPD from MSA-P. The nomogram incorporating radiomic and clinical features yielded the highest diagnostic accuracy (AUC = 0.973 and 0.963 for training and testing cohorts, respectively) and balanced sensitivity and specificity. Decision curve analysis confirmed the nomogram's clinical utility. Conclusion Radiomics-based MRI analysis offers a powerful tool for distinguishing IPD from MSA-P, enhancing diagnostic accuracy, and aiding personalized treatment planning. Integrating radiomic and clinical data may improve diagnostic workflows in clinical practice.
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Affiliation(s)
- Yin-Hui Huang
- Department of Neurology, Fujian Medical University Union Hospital, Fuzhou, China
- Department of Neurology, Jinjiang Municipal Hospital (Shanghai Sixth People’s Hospital Fujian), Quanzhou, China
| | - Mei-Li Yang
- Department of Neurology, Fujian Medical University Union Hospital, Fuzhou, China
- Department of Neurology, The Second Affiliated Hospital of Fujian Medical University, Quanzhou, China
| | - Yuan-Zhe Li
- Department of CT/MRI, The Second Affiliated Hospital of Fujian Medical University, Quanzhou, China
| | - Ya-Fang Chen
- Department of Neurology, The Second Affiliated Hospital of Fujian Medical University, Quanzhou, China
| | - Chi Cai
- Department of CT/MRI, The Second Affiliated Hospital of Fujian Medical University, Quanzhou, China
| | - Jing Huang
- Department of CT/MRI, The Second Affiliated Hospital of Fujian Medical University, Quanzhou, China
| | - Yi Wang
- Department of CT/MRI, The Second Affiliated Hospital of Fujian Medical University, Quanzhou, China
| | - Tie-Qiang Li
- School of Medical Imaging, Fujian Medical University, 350001 Fuzhou, Fujian Province, China
- Department of Medical Radiation and Nuclear Medicine, Karolinska University Hospital and Karolinska Institute 17176 Stockholm, Sweden
| | - Qin-Yong Ye
- Department of Neurology, Fujian Medical University Union Hospital, 29 Xinquan Road, Fuzhou, Fujian, China
- Fujian Key Laboratory of Molecular Neurology, Institute of Clinical Neurology, Institute of Neuroscience, Fujian Medical University, Fuzhou, China
- Fujian Institute of Geriatrics, Fujian Medical University Union Hospital, Fuzhou, Fujian, China
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Li Y, Song S, Zhu L, Zhang X, Mou Y, Lei M, Wang W, Tao Z. Machine learning-based prediction model for patients with recurrent Staphylococcus aureus bacteremia. BMC Med Inform Decis Mak 2025; 25:99. [PMID: 39994766 PMCID: PMC11853511 DOI: 10.1186/s12911-025-02878-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Accepted: 01/17/2025] [Indexed: 02/26/2025] Open
Abstract
BACKGROUND Staphylococcus aureus bacteremia (SAB) remains a significant contributor to both community-acquired and healthcare-associated bloodstream infections. SAB exhibits a high recurrence rate and mortality rate, leading to numerous clinical treatment challenges. Particularly, since the outbreak of COVID-19, there has been a gradual increase in SAB patients, with a growing proportion of (Methicillin-resistant Staphylococcus aureus) MRSA infections. Therefore, we have constructed and validated a pediction model for recurrent SAB using machine learning. This model aids physicians in promptly assessing the condition and intervening proactively. METHODS The patients data is sourced from the Medical Information Mart for Intensive Care IV (MIMIC-IV) database version 2.2. The patients were divided into training and testing datasets using a 7:3 random sampling ratio. The process of feature selection employed two methods: Recursive Feature Elimination (RFE) and Least Absolute Shrinkage and Selection Operator (LASSO). Prediction models were built using Extreme Gradient Boosting (XGBoost), Random Forest (RF), Logistic Regression (LR), Support Vector Machine (SVM), and Artificial Neural Network (ANN). Model validation included Receiver Operating Characteristic (ROC) analysis, Decision Curve Analysis (DCA), and Precision-Recall Curve (PRC). We utilized SHAP (SHapley Additive exPlanations) values to demonstrate the significance of each feature and explain the XGBoost model. RESULTS After screening, MRSA, PTT, RBC, RDW, Neutrophils_abs, Sodium, Calcium, Vancomycin concentration, MCHC, MCV, and Prognostic Nutritional Index(PNI) were selected as features for constructing the model. Through combined evaluation using ROC、 DCA and PRC, XGBoost demonstrated the best predictive performance, achieving an AUC value of 0.76 (95% CI: 0.66-0.85) in ROC and 0.56 (95% CI: 0.37-0.75) in PRC. Building a website based on the Xgboost model. SHAP illustrated the feature importance ranking in the XGBoost model and provided examples to explain the XGBoost model. CONCLUSIONS The adoption of XGBoost for model development holds widespread acceptance in the medical domain. The prediction model for recurrent SAB, developed by our team, aids physicians in timely diagnosis and treatment of patients.
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Affiliation(s)
- Yuan Li
- Department of Infectious Disease, Nanjing First Hospital, Nanjing Medical University, Nan jing, 210006, China
- Nanjing Medical University, Nanjing, China
| | - Shuang Song
- Department of Infectious Disease, Nanjing First Hospital, Nanjing Medical University, Nan jing, 210006, China
| | - Liying Zhu
- Department of Infectious Disease, Nanjing First Hospital, Nanjing Medical University, Nan jing, 210006, China
| | - Xiaorun Zhang
- Department of Infectious Disease, Nanjing First Hospital, Nanjing Medical University, Nan jing, 210006, China
| | - Yijiao Mou
- Department of Infectious Disease, Nanjing First Hospital, Nanjing Medical University, Nan jing, 210006, China
| | - Maoxing Lei
- Department of Infectious Disease, Nanjing First Hospital, Nanjing Medical University, Nan jing, 210006, China
| | - Wenjing Wang
- Department of Infectious Disease, Nanjing First Hospital, Nanjing Medical University, Nan jing, 210006, China.
| | - Zhen Tao
- Department of Infectious Disease, Nanjing First Hospital, Nanjing Medical University, Nan jing, 210006, China.
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He L, Zhan F, Li X, Yang H, Wu J. Ferroptosis-related genes in preeclampsia: integrative bioinformatics analysis, experimental validation and drug prediction. BMC Pregnancy Childbirth 2025; 25:189. [PMID: 39984919 PMCID: PMC11844108 DOI: 10.1186/s12884-025-07325-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2025] [Accepted: 02/13/2025] [Indexed: 02/23/2025] Open
Abstract
INTRODUCTION Preeclampsia (PE) is a severe pregnancy complication with limited early diagnostic and therapeutic options. Ferroptosis, an iron-dependent cell death pathway, has emerged as a potential mechanism in PE pathogenesis. This study investigated ferroptosis-related genes (FRGs) in PE to identify diagnostic biomarkers and therapeutic targets. METHODS Differentially expressed genes were identified from GEO databases and intersected with FRGs. Hub genes were selected using RandomForest and LASSO algorithms. Their diagnostic potential was evaluated through ROC analysis. Regulatory networks were constructed using transcription factors, microRNAs and potential drug targets. Hub gene expression was validated through immunohistochemistry, Western blot, and RT-qPCR in placental tissues and hypoxic trophoblasts. RESULTS We identified 25 ferroptosis-related differentially expressed genes enriched in ferroptosis and HIF-1 pathways. Four hub genes (NDRG1, P4HA1, LDHA, and IDO1) showed high diagnostic efficiency (AUC=0.9182). Immune cell analysis revealed altered levels of plasma cells, CD8+ T cells, Tregs, monocytes, and M2 macrophages in PE, correlating significantly with hub gene expression. We identified 84 mRNA-miRNA and 119 mRNA-TF interactions. Among 19 potential drugs, Tetrahydro-NAD showed promising targeting potential. Experimental validation confirmed elevated expression of NDRG1, P4HA1, and LDHA, and decreased IDO1 in PE tissues and hypoxic conditions. DISCUSSION This study identified four FRGs as potential PE biomarkers and therapeutic targets, providing new insights into PE pathogenesis through integrated bioinformatics and experimental validation. These findings may facilitate early PE diagnosis and treatment development.
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Affiliation(s)
- Lidan He
- Department of Obstetrics and Gynecology, The First Affiliated Hospital of Fujian Medical University, Fujian, 350004, China.
| | - Feng Zhan
- School of Electronic Information Engineering, Taiyuan University of Science and Technology, Taiyuan, 030024, Shanxi, China
- College of Engineering, Fujian Jiangxia University, Fuzhou, 350108, China
| | - Xuemei Li
- Department of Obstetrics and Gynecology, The First Affiliated Hospital of Fujian Medical University, Fujian, 350004, China
| | - Huijuan Yang
- Department of Obstetrics and Gynecology, The First Affiliated Hospital of Fujian Medical University, Fujian, 350004, China
| | - Jianbo Wu
- Department of Obstetrics and Gynecology, The First Affiliated Hospital of Fujian Medical University, Fujian, 350004, China.
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Fan C, Xu W, Li X, Wang J, He W, Shen M, Hua D, Zhang Y, Gu Y, Wu X, Mao H. Integrated bulk and single-cell RNA sequencing to identify potential biomarkers in intervertebral disc degeneration. Eur J Med Res 2025; 30:102. [PMID: 39953636 PMCID: PMC11827443 DOI: 10.1186/s40001-025-02346-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2024] [Accepted: 01/30/2025] [Indexed: 02/17/2025] Open
Abstract
BACKGROUND Nucleus pulposus (NP) deterioration plays a significant role in the development of intervertebral disc degeneration (IVDD) and low back pain (LBP). This paper aims to identify potential genes within degenerated NP tissue and elucidate the pathogenesis of IVDD through bioinformatics analysis. METHODS We conducted a transcriptomic analysis of patient's degenerative NP tissue employing advanced bioinformatics techniques and machine learning algorithms. Utilizing hdWGCNA, we successfully acquired WGCNA single-cell sequencing data and pinpointed crucial genes implicated in IVDD. Subsequently, we employed the Monocle3 package to perform pseudotime sequence analysis, enabling the identification of genes associated with the differentiation and developmental processes of NP tissue. Following this, normalized and logarithmically transformed the bulk sequencing data. Subsequently, we conducted preliminary screening using single-factor logistic regression on the genes derived from single-cell sequencing. Next, we applied two machine learning techniques, namely, SVM-RFE and random forest, to discern pivotal pathogenic genes. Finally, we used validation sets to verify trends and qualitativeness and performed in vitro and in vivo validation analyses of normal and degenerative NP tissues. RESULTS 909 genes associated with IVDD were identified through hdWGCNA, while pseudotime sequence analysis uncovered 1964 genes related to differentiation and developmental processes. The two had 208 genes in common. Subsequently, we conducted an initial screening of single-cell genes by integrating the bulk database with single logistic regression. Next, we utilized machine learning techniques to identify the IVDD genes CDH, DPH5, and SELENOF. PCR analysis confirmed that the expression of CDH and DPH5 in degraded nucleus pulposus cells (NPCs) was decreased by 31% and 28% in vivo, and 36% and 29% in vitro, respectively, while SELENOF showed the opposite trend. Furthermore, IVDD was validated through imaging and histological staining. CONCLUSION As pathogenic genes in IVDD, our findings indicate that CTH, DPH5, and SELENOF are important players and might be promising therapeutic targets for IVDD treatment.
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Affiliation(s)
- Chunyang Fan
- Department of Orthopaedic Surgery, Orthopaedic Institute, The First Affiliated Hospital, Suzhou Medical College, Soochow University, Suzhou, 215006, Jiangsu, China
| | - Wei Xu
- Department of Gastroenterology, The First Affiliated Hospital of Soochow University, Suzhou, China
| | - Xuefeng Li
- Department of Orthopaedic Surgery, Orthopaedic Institute, The First Affiliated Hospital, Suzhou Medical College, Soochow University, Suzhou, 215006, Jiangsu, China
| | - Jiale Wang
- Department of Orthopaedic Surgery, Orthopaedic Institute, The First Affiliated Hospital, Suzhou Medical College, Soochow University, Suzhou, 215006, Jiangsu, China
| | - Wei He
- Department of Orthopaedic Surgery, Orthopaedic Institute, The First Affiliated Hospital, Suzhou Medical College, Soochow University, Suzhou, 215006, Jiangsu, China
- Department of Orthopaedic Surgery, Zhangjiagang Hospital Affiliated to Soochow University, Suzhou, China
| | - Meng Shen
- Department of Oncology, The First Affiliated Hospital of Soochow University, Suzhou, China
| | - Di Hua
- Department of Oncology, The First Affiliated Hospital of Soochow University, Suzhou, China
| | - Yao Zhang
- Department of Orthopaedic Surgery, Orthopaedic Institute, The First Affiliated Hospital, Suzhou Medical College, Soochow University, Suzhou, 215006, Jiangsu, China
| | - Ye Gu
- Department of Orthopaedic Surgery, Orthopaedic Institute, The First Affiliated Hospital, Suzhou Medical College, Soochow University, Suzhou, 215006, Jiangsu, China.
- Department of Orthopaedic Surgery, Changshu Hospital Affiliated to Soochow University, First People's Hospital of Changshu City, Suzhou, Jiangsu, China.
| | - Xiexing Wu
- Department of Orthopaedic Surgery, Orthopaedic Institute, The First Affiliated Hospital, Suzhou Medical College, Soochow University, Suzhou, 215006, Jiangsu, China.
| | - Haiqing Mao
- Department of Orthopaedic Surgery, Orthopaedic Institute, The First Affiliated Hospital, Suzhou Medical College, Soochow University, Suzhou, 215006, Jiangsu, China.
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Liu K, Qian D, Zhang D, Jin Z, Yang Y, Zhao Y. A risk prediction model for venous thromboembolism in hospitalized patients with thoracic trauma: a machine learning, national multicenter retrospective study. World J Emerg Surg 2025; 20:14. [PMID: 39948568 PMCID: PMC11823207 DOI: 10.1186/s13017-025-00583-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2024] [Accepted: 01/22/2025] [Indexed: 02/16/2025] Open
Abstract
BACKGROUND Early treatment and prevention are the keys to reducing the mortality of VTE in patients with thoracic trauma. This study aimed to develop and validate an automatic prediction model based on machine learning for VTE risk screening in patients with thoracic trauma. METHODS In this national multicenter retrospective study, the clinical data of chest trauma patients hospitalized in 33 hospitals in China from October 2020 to September 2021 were collected for model training and testing. The data of patients with thoracic trauma at Shanghai Sixth People's Hospital from October 2021 to September 2022 were included for further verification. The performance of the model was measured mainly by the area under the receiver operating characteristic curve (AUROC) and the mean accuracy (mAP), and the sensitivity, specificity, positive predictive value, and negative predictive value were also measured. RESULTS A total of 3116 patients were included in the training and validation of the model. External validation was performed in 408 patients. The random forest (RF) model was selected as the final model, with an AUROC of 0·879 (95% CI 0·856-0·902) in the test dataset. In the external validation, the AUROC was 0.83 (95% CI 0.794-0.866), the specificity was 0.756 (95% CI 0.713-0.799), the sensitivity was 0.821 (95% CI 0.692-0.923), the negative predictive value was 0.976 (95% CI 0.958-0.993), and the positive likelihood ratio was 3.364. CONCLUSIONS This model can be used to quickly screen for the risk of VTE in patients with thoracic trauma. More than 90% of unnecessary VTE tests can be avoided, which can help clinicians target interventions to high-risk groups and ensure resource optimization. Although further validation and improvement are needed, this study has considerable clinical value.
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Affiliation(s)
- Kaibin Liu
- Department of Thoracic Surgery, Shanghai Jiao Tong University School of Medicine Affiliated Sixth People's Hospital, Shanghai, 200233, China
| | - Di Qian
- Department of Health Statistics,Faculty of Health Service, Naval Medical University, 800 Xiangyin Road, Shanghai, 200433, China
| | - Dongsheng Zhang
- Department of Cardiothoracic Surgery, Shijiazhuang Third Hospital, Shijiazhuang, 050000, Hebei, China
| | - Zhichao Jin
- Department of Health Statistics,Faculty of Health Service, Naval Medical University, 800 Xiangyin Road, Shanghai, 200433, China
| | - Yi Yang
- Department of Thoracic Surgery, Shanghai Sixth People's Hospital, 600 Yishan Road, Shanghai, 200235, China.
| | - Yanfang Zhao
- Department of Health Statistics,Faculty of Health Service, Naval Medical University, 800 Xiangyin Road, Shanghai, 200433, China.
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Lima RV, Arruda MP, Muniz MCR, Filho HNF, Ferrerira DMR, Pereira SM. Artificial intelligence methods in diagnosis of retinoblastoma based on fundus imaging: a systematic review and meta-analysis. Graefes Arch Clin Exp Ophthalmol 2025; 263:547-553. [PMID: 39289309 DOI: 10.1007/s00417-024-06643-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2024] [Revised: 07/26/2024] [Accepted: 09/09/2024] [Indexed: 09/19/2024] Open
Abstract
BACKGROUND Artificial intelligence (AI) algorithms for the detection of retinoblastoma (RB) by fundus image analysis have been proposed as a potentially effective technique to facilitate diagnosis and screening programs. However, doubts remain about the accuracy of the technique, the best type of AI for this situation, and its feasibility for everyday use. Therefore, we performed a systematic review and meta-analysis to evaluate this issue. METHODS Following PRISMA 2020 guidelines, a comprehensive search of MEDLINE, Embase, ClinicalTrials.gov and IEEEX databases identified 494 studies whose titles and abstracts were screened for eligibility. We included diagnostic studies that evaluated the accuracy of AI in identifying retinoblastoma based on fundus imaging. Univariate and bivariate analysis was performed using the random effects model. The study protocol was registered in PROSPERO under CRD42024499221. RESULTS Six studies with 9902 fundus images were included, of which 5944 (60%) had confirmed RB. Only one dataset used a semi-supervised machine learning (ML) based method, all other studies used supervised ML, three using architectures requiring high computational power and two using more economical models. The pooled analysis of all models showed a sensitivity of 98.2% (95% CI: 0.947-0.994), a specificity of 98.5% (95% CI: 0.916-0.998) and an AUC of 0.986 (95% CI: 0.970-0.989). Subgroup analyses comparing models with high and low computational power showed no significant difference (p=0.824). CONCLUSIONS AI methods showed a high precision in the diagnosis of RB based on fundus images with no significant difference when comparing high and low computational power models, suggesting a viability of their use. Validation and cost-effectiveness studies are needed in different income countries. Subpopulations should also be analyzed, as AI may be useful as an initial screening tool in populations at high risk for RB, serving as a bridge to the pediatric ophthalmologist or ocular oncologist, who are scarce globally. KEY MESSAGES What is known Retinoblastoma is the most common intraocular cancer in childhood and diagnostic delay is the main factor leading to a poor prognosis. The application of machine learning techniques proposes reliable methods for screening and diagnosis of retinal diseases. What is new The meta-analysis of the diagnostic accuracy of artificial intelligence methods for diagnosing retinoblastoma based on fundus images showed a sensitivity of 98.2% (95% CI: 0.947-0.994) and a specificity of 98.5% (95% CI: 0.916-0.998). There was no statistically significant difference in the diagnostic accuracy of high and low computational power models. The overall performance of supervised machine learning was best than unsupervised, although few studies were available on the second type.
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Affiliation(s)
- Rian Vilar Lima
- Department of Medicine, University of Fortaleza, Av. Washington Soares, 1321 - Edson Queiroz, Fortaleza - CE, Ceará, 60811-905, Brazil.
| | | | - Maria Carolina Rocha Muniz
- Department of Medicine, University of Fortaleza, Av. Washington Soares, 1321 - Edson Queiroz, Fortaleza - CE, Ceará, 60811-905, Brazil
| | - Helvécio Neves Feitosa Filho
- Department of Medicine, University of Fortaleza, Av. Washington Soares, 1321 - Edson Queiroz, Fortaleza - CE, Ceará, 60811-905, Brazil
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Alshwayyat S, Kamal H, Alshwayyat TA, Alshwayyat M, Alkhatib M, Erjan A. Does Adjuvant Radiotherapy Enhance Survival in Intracranial Solitary Fibrous Tumor Patients? World Neurosurg 2025; 194:123545. [PMID: 39647524 DOI: 10.1016/j.wneu.2024.12.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2024] [Revised: 12/01/2024] [Accepted: 12/02/2024] [Indexed: 12/10/2024]
Abstract
OBJECTIVE Intracranial solitary fibrous tumor is a rare central nervous system tumor that lacks a reliable prognostic clinical model. Uncertainty persists regarding the treatment outcomes of surgery and adjuvant radiotherapy (ART). To address this, we investigated the efficacy of ART and applied machine learning (ML) to develop accurate prognostic models. METHODS The Surveillance, Epidemiology, and End Results database was used for this study's analysis. To identify the prognostic variables, we conducted Cox regression analysis and constructed prognostic models using 5 ML algorithms to predict 5-year survival. A validation method incorporating the area under the curve of the receiver operating characteristic curve was used to validate the accuracy and reliability of the models. We investigated the role of ART and surgery using Kaplan-Meier survival analysis, competing risk analysis, and Bias Reduction through Analysis of Competing Events method. RESULTS The study population comprised 747 patients. Among them are 316 patients with "surgery" and 431 patients with "surgery + ART." The therapeutic groups showed significant differences in overall survival. Multivariate Cox regression analysis revealed that older age and surgery alone were poor prognostic factors. The most significant prognostic factors were the local tumor excision, followed by lobectomy and age. CONCLUSIONS Although ART did not lead to a substantial decrease in cancer-specific deaths, it did improve overall survival. This underscores the broader health benefits of ART, including effective management of comorbid conditions. Caution is advised when interpreting these survival benefits because of potential confounding factors in patient health and treatment management. Our web tool and ML models aid in clinical decision-making.
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Affiliation(s)
- Sakhr Alshwayyat
- King Hussein Cancer Center, Amman, Jordan; Princess Basma Teaching Hospital, Irbid, Jordan; Applied Science Research Center, Applied Science Private University, Amman, Jordan
| | - Haya Kamal
- Faculty of Medicine, Jordan University of Science & Technology, Irbid, Jordan
| | | | - Mustafa Alshwayyat
- Faculty of Medicine, Jordan University of Science & Technology, Irbid, Jordan
| | - Mesk Alkhatib
- Faculty of Medicine, University of Jordan, Amman, Jordan
| | - Ayah Erjan
- Department of Radiation Oncology, King Hussein Cancer Center, Amman, Jordan.
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Nie S, Zhang S, Zhao Y, Li X, Xu H, Wang Y, Wang X, Zhu M. Machine Learning Applications in Acute Coronary Syndrome: Diagnosis, Outcomes and Management. Adv Ther 2025; 42:636-665. [PMID: 39641854 DOI: 10.1007/s12325-024-03060-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Accepted: 08/20/2024] [Indexed: 12/07/2024]
Abstract
Acute coronary syndrome (ACS) is a leading cause of death worldwide. Prompt and accurate diagnosis of acute myocardial infarction (AMI) or ACS is crucial for improved management and prognosis of patients. The rapid growth of machine learning (ML) research has significantly enhanced our understanding of ACS. Most studies have focused on applying ML to detect ACS, predict prognosis, manage treatment, identify risk factors, and discover potential biomarkers, particularly using data from electrocardiograms (ECGs), electronic medical records (EMRs), imaging, and omics as the main data modality. Additionally, integrating ML with smart devices such as wearables, smartphones, and sensor technology enables real-time dynamic assessments, enhancing clinical care for patients with ACS. This review provided an overview of the workflow and key concepts of ML as they relate to ACS. It then provides an overview of current ML algorithms used for ACS diagnosis, prognosis, identification of potential risk biomarkers, and management. Furthermore, we discuss the current challenges faced by ML algorithms in this field and how they might be addressed in the future, especially in the context of medicine.
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Affiliation(s)
- Shanshan Nie
- Department of Cardiovascular Disease, The First Affiliated Hospital of Henan University of Chinese Medicine, Zhengzhou, 450000, Henan, China
| | - Shan Zhang
- Department of Digestive Diseases, The First Affiliated Hospital of Henan University of Chinese Medicine, Zhengzhou, China
| | - Yuhang Zhao
- Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Boston, USA
| | - Xun Li
- College of Pharmacy, Henan University of Chinese Medicine, Zhengzhou, 450046, Henan, China
| | - Huaming Xu
- School of Medicine, Henan University of Chinese Medicine, Zhengzhou, 450046, Henan, China
| | - Yongxia Wang
- Department of Cardiovascular Disease, The First Affiliated Hospital of Henan University of Chinese Medicine, Zhengzhou, 450000, Henan, China
| | - Xinlu Wang
- Department of Cardiovascular Disease, The First Affiliated Hospital of Henan University of Chinese Medicine, Zhengzhou, 450000, Henan, China.
| | - Mingjun Zhu
- Department of Cardiovascular Disease, The First Affiliated Hospital of Henan University of Chinese Medicine, Zhengzhou, 450000, Henan, China.
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Zhu Y, Mei T, Xu D, Lu W, Weng D, He F. Predicting delayed neurological sequelae in patients with carbon monoxide poisoning using machine learning models. Clin Toxicol (Phila) 2025; 63:102-111. [PMID: 39807645 DOI: 10.1080/15563650.2024.2437113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2024] [Revised: 11/20/2024] [Accepted: 11/27/2024] [Indexed: 01/16/2025]
Abstract
INTRODUCTION Delayed neurological sequelae is a common complication following carbon monoxide poisoning, which significantly affects the quality of life of patients with the condition. We aimed to develop a machine learning-based prediction model to predict the frequency of delayed neurological sequelae in patients with carbon monoxide poisoning. METHODS A single-center retrospective analysis was conducted in an emergency department from January 01, 2018, to December 31, 2023. We analyzed data from patients with carbon monoxide poisoning, which were divided into training and test sets. We developed and evaluated sixteen machine learning models, using accuracy, sensitivity, specificity, and other relevant metrics. Threshold adjustments were performed to determine the most accurate model for predicting patients with carbon monoxide poisoning at risk of delayed neurological sequelae. RESULTS A total of 360 patients with carbon monoxide poisoning were investigated in the present study, of whom 103 (28.6%) were diagnosed with delayed neurological sequelae, and two (0.6%) died. After threshold adjustment, the synthetic minority oversampling technique-random forest model demonstrated superior performance with an area under the receiver operating characteristic curve of 0.89 and an accuracy of 0.83. The sensitivity and specificity of the model were 0.9 and 0.8, respectively. DISCUSSION The study developed a machine learning-based synthetic minority oversampling technique-random forest model to predict delayed neurological sequelae in patients with carbon monoxide poisoning, achieving an area under the receiver operating characteristic curve of 0.89. This technique was used to handle class imbalance, and shapley additive explanations analysis helped explain the model predictions, highlighting important factors such as the Glasgow Coma Scale, hyperbaric oxygen therapy, kidney function, immune response, liver function, and blood clotting. CONCLUSIONS The machine learning-based synthetic minority oversampling technique-random forest model developed in this study effectively identifies patients with carbon monoxide poisoning at high risk for delayed neurological sequelae.
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Affiliation(s)
- Yunfeng Zhu
- School of Environmental and Biological Engineering, Nanjing University of Science & Technology, Nanjing, China
| | - Tianshu Mei
- Department of Emergency Medicine, Nanjing Drum Tower Hospital, The Affiliated Hospital of Nanjing University Medical School, Nanjing, China
| | - Dawei Xu
- Department of Emergency Medicine, the Affiliated Suqian Hospital of Xuzhou Medical University, Suqian, China
| | - Wei Lu
- Department of Emergency Medicine, the Affiliated Suqian Hospital of Xuzhou Medical University, Suqian, China
| | - Dan Weng
- School of Environmental and Biological Engineering, Nanjing University of Science & Technology, Nanjing, China
| | - Fei He
- Department of Emergency Medicine, Nanjing Drum Tower Hospital, The Affiliated Hospital of Nanjing University Medical School, Nanjing, China
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Zhu J, Zhao Y, Huang C, Zhou C, Wu S, Chen T, Zhan X. Two-centers machine learning analysis for predicting acid-fast bacilli results in tuberculosis sputum tests. J Clin Tuberc Other Mycobact Dis 2025; 38:100511. [PMID: 39927134 PMCID: PMC11803159 DOI: 10.1016/j.jctube.2025.100511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2025] Open
Abstract
Background Tuberculosis (TB) is a chronic respiratory infectious disease caused by Mycobacterium tuberculosis, typically diagnosed through sputum smear microscopy for acid-fast bacilli (AFB) to assess the infectivity of TB. Methods This study enrolled 769 patients, including 641 patients from the First Affiliated Hospital of Guangxi Medical University as the training group, and 128 patients from Guangxi Hospital of the First Affiliated Hospital of Sun Yat-sen University as the validation group. Among the training cohort, 107 patients were AFB-positive, and 534 were AFB-negative. In the validation cohort, 24 were AFB-positive, and 104 were AFB-negative. Blood samples were collected and analyzed using machine learning (ML) methods to identify key factors for TB diagnosis. Results Several ML methods were compared, and support vector machine recursive feature elimination (SVM-RFE) was selected to construct a nomogram diagnostic model. The area under the curve (AUC) of the diagnostic model was 0.721 in the training cohort and 0.758 in the validation cohort. The model demonstrated clinical utility when the threshold was between 38% and 94%, with the NONE line above the ALL line in the decision curve analysis. Conclusion We developed a diagnostic model using multiple ML methods to predict AFB results, achieving satisfactory diagnostic performance.
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Affiliation(s)
- Jichong Zhu
- People’s Hospital of Guilin, Guilin 541002, PR China
- First Affiliated Hospital of Guangxi Medical University, Nanning 530021, PR China
| | - Yong Zhao
- Guangxi Hospital, the First Affiliated Hospital of Sun Yat-sen University, Nanning 530021, PR China
| | - Chengqian Huang
- First Affiliated Hospital of Guangxi Medical University, Nanning 530021, PR China
| | - Chenxing Zhou
- First Affiliated Hospital of Guangxi Medical University, Nanning 530021, PR China
| | - Shaofeng Wu
- First Affiliated Hospital of Guangxi Medical University, Nanning 530021, PR China
| | - Tianyou Chen
- First Affiliated Hospital of Guangxi Medical University, Nanning 530021, PR China
| | - Xinli Zhan
- First Affiliated Hospital of Guangxi Medical University, Nanning 530021, PR China
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Canzone A, Belmonte G, Patti A, Vicari DSS, Rapisarda F, Giustino V, Drid P, Bianco A. The multiple uses of artificial intelligence in exercise programs: a narrative review. Front Public Health 2025; 13:1510801. [PMID: 39957989 PMCID: PMC11825809 DOI: 10.3389/fpubh.2025.1510801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2024] [Accepted: 01/13/2025] [Indexed: 02/18/2025] Open
Abstract
Background Artificial intelligence is based on algorithms that enable machines to perform tasks and activities that generally require human intelligence, and its use offers innovative solutions in various fields. Machine learning, a subset of artificial intelligence, concentrates on empowering computers to learn and enhance from data autonomously; this narrative review seeks to elucidate the utilization of artificial intelligence in fostering physical activity, training, exercise, and health outcomes, addressing a significant gap in the comprehension of practical applications. Methods Only Randomized Controlled Trials (RCTs) published in English were included. Inclusion criteria: all RCTs that use artificial intelligence to program, supervise, manage, or assist physical activity, training, exercise, or health programs. Only studies published from January 1, 2014, were considered. Exclusion criteria: all the studies that used robot-assisted, robot-supported, or robotic training were excluded. Results A total of 1772 studies were identified. After the first stage, where the duplicates were removed, 1,004 articles were screened by title and abstract. A total of 24 studies were identified, and finally, after a full-text review, 15 studies were identified as meeting all eligibility criteria for inclusion. The findings suggest that artificial intelligence holds promise in promoting physical activity across diverse populations, including children, adolescents, adults, older adult, and individuals with disabilities. Conclusion Our research found that artificial intelligence, machine learning and deep learning techniques were used: (a) as part of applications to generate automatic messages and be able to communicate with users; (b) as a predictive approach and for gesture and posture recognition; (c) as a control system; (d) as data collector; and (e) as a guided trainer.
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Affiliation(s)
- Alberto Canzone
- Sport and Exercise Sciences Research Unit, Department of Psychology, Educational Science and Human Movement, University of Palermo, Palermo, Italy
- Department of Biomedical and Dental Sciences and Morphological and Functional Imaging, University of Messina, Messina, Italy
| | - Giacomo Belmonte
- Sport and Exercise Sciences Research Unit, Department of Psychology, Educational Science and Human Movement, University of Palermo, Palermo, Italy
| | - Antonino Patti
- Sport and Exercise Sciences Research Unit, Department of Psychology, Educational Science and Human Movement, University of Palermo, Palermo, Italy
| | - Domenico Savio Salvatore Vicari
- Sport and Exercise Sciences Research Unit, Department of Psychology, Educational Science and Human Movement, University of Palermo, Palermo, Italy
- Department of Neurosciences, Biomedicine and Movement Sciences, University of Verona, Verona, Italy
| | - Fabio Rapisarda
- Sport and Exercise Sciences Research Unit, Department of Psychology, Educational Science and Human Movement, University of Palermo, Palermo, Italy
| | - Valerio Giustino
- Sport and Exercise Sciences Research Unit, Department of Psychology, Educational Science and Human Movement, University of Palermo, Palermo, Italy
| | - Patrik Drid
- Faculty of Sport and Physical Education, University of Novi Sad, Novi Sad, Serbia
| | - Antonino Bianco
- Sport and Exercise Sciences Research Unit, Department of Psychology, Educational Science and Human Movement, University of Palermo, Palermo, Italy
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Aljubran HJ, Aljubran MJ, AlAwami AM, Aljubran MJ, Alkhalifah MA, Alkhalifah MM, Alkhalifah AS, Alabdullah TS. Examining the Use of Machine Learning Algorithms to Enhance the Pediatric Triaging Approach. Open Access Emerg Med 2025; 17:51-61. [PMID: 39906028 PMCID: PMC11791337 DOI: 10.2147/oaem.s494280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2024] [Accepted: 01/14/2025] [Indexed: 02/06/2025] Open
Abstract
Purpose Triage systems play a vital role in effectively prioritizing patients according to the seriousness of their condition. However, conventional emergency triage systems in pediatric care predominantly rely on subjective evaluations. Machine learning technologies have shown significant potential in various medical fields, including pediatric emergency medicine. Therefore, this study seeks to employ pediatric emergency department records to train machine learning algorithms and evaluate their effectiveness and outcomes in the triaging system. This model will improve accuracy in pediatric emergency triage by categorizing cases into three urgency levels (nonurgent, urgent, and emergency). Patients and Methods This is a retrospective observational cohort study that used emergency patient records obtained from the Emergency Department at King Faisal Specialist Hospital & Research Centre. Using the emergency severity index (a scale of 1 to 5), various machine learning techniques were employed to build different machine learning models, such as regression, instance-based, regularization, tree-based, Bayesian, dimensionality reduction, and ensemble algorithms. The accuracy of these models was compared to reach the most accurate and precise model. Results A total of 38,891 pediatric emergency patient records were collected. However, due to numerous outliers and incorrectly labeled data, clinical knowledge and a confident learning algorithm were employed to preprocess the dataset, leaving 18,237 patient records. Notably, ensemble algorithms surpassed other models in all evaluation metrics, with CatBoost achieving an F-1 score of 90%. Importantly, the model never misclassified an urgent patient as nonurgent or vice versa. Conclusion The study successfully created a machine learning model to classify pediatric emergency department patients into three urgency levels. The model, tailored to the specific needs of pediatric patients, shows promise in improving triage accuracy and patient care in pediatric emergency departments. The implication of this model in the real-life sitting will increase the accuracy of the pediatric emergency triage and will reduce the possibilities of over or under triaging.
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Affiliation(s)
- Hussain J Aljubran
- College of Medicine, Imam Abdulrahman Bin Faisal University, Dammam, Saudi Arabia
| | - Maitham J Aljubran
- Pediatric Department, King Faisal Specialist Hospital & Research Centre, Riyadh, Saudi Arabia
| | - Ahmed M AlAwami
- College of Medicine, Imam Abdulrahman Bin Faisal University, Dammam, Saudi Arabia
| | - Mohammad J Aljubran
- Department of Energy Science & Engineering, Stanford University, Stanford, CA, USA
| | - Mohammed A Alkhalifah
- Emergency Medicine Department, Johns Hopkins Aramco Healthcare, Al-Hasa, Saudi Arabia
| | - Moayd M Alkhalifah
- Neurology Unit, Neurosciences Institute, Johns Hopkins Aramco Healthcare, Dhahran, Saudi Arabia
| | | | - Tawfik S Alabdullah
- Pediatric Emergency Medicine, King Faisal Specialist Hospital & Research Centre, Riyadh, Saudi Arabia
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de Oliveira MBM, Mendes F, Martins M, Cardoso P, Fonseca J, Mascarenhas T, Saraiva MM. The Role of Artificial Intelligence in Urogynecology: Current Applications and Future Prospects. Diagnostics (Basel) 2025; 15:274. [PMID: 39941204 PMCID: PMC11816405 DOI: 10.3390/diagnostics15030274] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2024] [Revised: 01/09/2025] [Accepted: 01/17/2025] [Indexed: 02/16/2025] Open
Abstract
Artificial intelligence (AI) is the new medical hot topic, being applied mainly in specialties with a strong imaging component. In the domain of gynecology, AI has been tested and shown vast potential in several areas with promising results, with an emphasis on oncology. However, fewer studies have been made focusing on urogynecology, a branch of gynecology known for using multiple imaging exams (IEs) and tests in the management of women's pelvic floor health. This review aims to illustrate the current state of AI in urogynecology, namely with the use of machine learning (ML) and deep learning (DL) in diagnostics and as imaging tools, discuss possible future prospects for AI in this field, and go over its limitations that challenge its safe implementation.
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Affiliation(s)
- Maria Beatriz Macedo de Oliveira
- Faculty of Medicine, University of Porto, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal; (M.B.M.d.O.); (P.C.); (T.M.)
| | - Francisco Mendes
- Department of Gastroenterology, São João University Hospital, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal; (F.M.); (M.M.)
- WGO Gastroenterology and Hepatology Training Center, 4200-427 Porto, Portugal
| | - Miguel Martins
- Department of Gastroenterology, São João University Hospital, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal; (F.M.); (M.M.)
- WGO Gastroenterology and Hepatology Training Center, 4200-427 Porto, Portugal
| | - Pedro Cardoso
- Faculty of Medicine, University of Porto, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal; (M.B.M.d.O.); (P.C.); (T.M.)
- Department of Gastroenterology, São João University Hospital, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal; (F.M.); (M.M.)
- WGO Gastroenterology and Hepatology Training Center, 4200-427 Porto, Portugal
| | - João Fonseca
- CINTESIS@RISE, Department of Community Medicine, Information and Health Decision Sciences (MEDCIDS), Faculty of Medicine, University of Porto, 4200-427 Porto, Portugal;
| | - Teresa Mascarenhas
- Faculty of Medicine, University of Porto, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal; (M.B.M.d.O.); (P.C.); (T.M.)
- Department of Obstetrics and Gynecology, São João University Hospital, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal
| | - Miguel Mascarenhas Saraiva
- Faculty of Medicine, University of Porto, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal; (M.B.M.d.O.); (P.C.); (T.M.)
- Department of Gastroenterology, São João University Hospital, Alameda Professor Hernâni Monteiro, 4200-427 Porto, Portugal; (F.M.); (M.M.)
- WGO Gastroenterology and Hepatology Training Center, 4200-427 Porto, Portugal
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Huang Q, Huang F, Chen C, Xiao P, Liu J, Gao Y. Machine-learning model based on ultrasomics for non-invasive evaluation of fibrosis in IgA nephropathy. Eur Radiol 2025:10.1007/s00330-025-11368-9. [PMID: 39853332 DOI: 10.1007/s00330-025-11368-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2024] [Revised: 12/02/2024] [Accepted: 12/19/2024] [Indexed: 01/26/2025]
Abstract
OBJECTIVES To develop and validate an ultrasomics-based machine-learning (ML) model for non-invasive assessment of interstitial fibrosis and tubular atrophy (IF/TA) in patients with IgA nephropathy (IgAN). MATERIALS AND METHODS In this multi-center retrospective study, 471 patients with primary IgA nephropathy from four institutions were included (training, n = 275; internal testing, n = 69; external testing, n = 127; respectively). The least absolute shrinkage and selection operator logistic regression with tenfold cross-validation was used to identify the most relevant features. The ML models were constructed based on ultrasomics. The Shapley Additive Explanation (SHAP) was used to explore the interpretability of the models. Logistic regression analysis was employed to combine ultrasomics, clinical data, and ultrasound imaging characteristics, creating a comprehensive model. A receiver operating characteristic curve, calibration, decision curve, and clinical impact curve were used to evaluate prediction performance. RESULTS To differentiate between mild and moderate-to-severe IF/TA, three prediction models were developed: the Rad_SVM_Model, Clinic_LR_Model, and Rad_Clinic_Model. The area under curves of these three models were 0.861, 0.884, and 0.913 in the training cohort, and 0.760, 0.860, and 0.894 in the internal validation cohort, as well as 0.794, 0.865, and 0.904 in the external validation cohort. SHAP identified the contribution of radiomics features. Difference analysis showed that there were significant differences between radiomics features and fibrosis. The comprehensive model was superior to that of individual indicators and performed well. CONCLUSIONS We developed and validated a model that combined ultrasomics, clinical data, and clinical ultrasonic characteristics based on ML to assess the extent of fibrosis in IgAN. KEY POINTS Question Currently, there is a lack of a comprehensive ultrasomics-based machine-learning model for non-invasive assessment of the extent of Immunoglobulin A nephropathy (IgAN) fibrosis. Findings We have developed and validated a robust and interpretable machine-learning model based on ultrasomics for assessing the degree of fibrosis in IgAN. Clinical relevance The machine-learning model developed in this study has significant interpretable clinical relevance. The ultrasomics-based comprehensive model had the potential for non-invasive assessment of fibrosis in IgAN, which helped evaluate disease progress.
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Affiliation(s)
- Qun Huang
- Department of Ultrasound, First Affiliated Hospital of Guangxi Medical University, Nanning, China
| | - Fangyi Huang
- Department of Ultrasound, First Affiliated Hospital of Guangxi Medical University, Nanning, China
| | - Chengcai Chen
- Department of Ultrasound, Affiliated Hospital of Youjiang Medical University for Nationalities, Baise, China
| | - Pan Xiao
- Department of Ultrasound, Second Affiliated Hospital of Guangxi Medical University, Nanning, China
| | - Jiali Liu
- Department of Ultrasound, People's Hospital of Guangxi Zhuang Autonomous Region, Nanning, China
| | - Yong Gao
- Department of Ultrasound, First Affiliated Hospital of Guangxi Medical University, Nanning, China.
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Fan C, Yang G, Li C, Cheng J, Chen S, Mi H. Uncovering glycolysis-driven molecular subtypes in diabetic nephropathy: a WGCNA and machine learning approach for diagnostic precision. Biol Direct 2025; 20:10. [PMID: 39838413 PMCID: PMC11748251 DOI: 10.1186/s13062-025-00601-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2024] [Accepted: 01/07/2025] [Indexed: 01/23/2025] Open
Abstract
INTRODUCTION Diabetic nephropathy (DN) is a common diabetes-related complication with unclear underlying pathological mechanisms. Although recent studies have linked glycolysis to various pathological states, its role in DN remains largely underexplored. METHODS In this study, the expression patterns of glycolysis-related genes (GRGs) were first analyzed using the GSE30122, GSE30528, and GSE96804 datasets, followed by an evaluation of the immune landscape in DN. An unsupervised consensus clustering of DN samples from the same dataset was conducted based on differentially expressed GRGs. The hub genes associated with DN and glycolysis-related clusters were identified via weighted gene co-expression network analysis (WGCNA) and machine learning algorithms. Finally, the expression patterns of these hub genes were validated using single-cell sequencing data and quantitative real-time polymerase chain reaction (qRT-PCR). RESULTS Eleven GRGs showed abnormal expression in DN samples, leading to the identification of two distinct glycolysis clusters, each with its own immune profile and functional pathways. The analysis of the GSE142153 dataset showed that these clusters had specific immune characteristics. Furthermore, the Extreme Gradient Boosting (XGB) model was the most effective in diagnosing DN. The five most significant variables, including GATM, PCBD1, F11, HRSP12, and G6PC, were identified as hub genes for further investigation. Single-cell sequencing data showed that the hub genes were predominantly expressed in proximal tubular epithelial cells. In vitro experiments confirmed the expression pattern in NC. CONCLUSION Our study provides valuable insights into the molecular mechanisms underlying DN, highlighting the involvement of GRGs and immune cell infiltration.
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Affiliation(s)
- Chenglong Fan
- Department of Urology, The First Affiliated Hospital of Guangxi Medical University, Nanning, 530021, Guangxi, China
| | - Guanglin Yang
- Department of Urology, The First Affiliated Hospital of Guangxi Medical University, Nanning, 530021, Guangxi, China
- Department of Urology, Guangxi Medical University Cancer Hospital, Nanning, 530000, Guangxi, China
| | - Cheng Li
- Department of Urology, The First Affiliated Hospital of Guangxi Medical University, Nanning, 530021, Guangxi, China
| | - Jiwen Cheng
- Department of Urology, The First Affiliated Hospital of Guangxi Medical University, Nanning, 530021, Guangxi, China.
| | - Shaohua Chen
- Department of Urology, Guangxi Medical University Cancer Hospital, Nanning, 530000, Guangxi, China.
| | - Hua Mi
- Department of Urology, The First Affiliated Hospital of Guangxi Medical University, Nanning, 530021, Guangxi, China.
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Huang C, Shu S, Zhou M, Sun Z, Li S. Development and validation of an interpretable machine learning model for predicting left atrial thrombus or spontaneous echo contrast in non-valvular atrial fibrillation patients. PLoS One 2025; 20:e0313562. [PMID: 39820175 PMCID: PMC11737704 DOI: 10.1371/journal.pone.0313562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2024] [Accepted: 10/25/2024] [Indexed: 01/19/2025] Open
Abstract
PURPOSE Left atrial thrombus or spontaneous echo contrast (LAT/SEC) are widely recognized as significant contributors to cardiogenic embolism in non-valvular atrial fibrillation (NVAF). This study aimed to construct and validate an interpretable predictive model of LAT/SEC risk in NVAF patients using machine learning (ML) methods. METHODS Electronic medical records (EMR) data of consecutive NVAF patients scheduled for catheter ablation at the First Hospital of Jilin University from October 1, 2022, to February 1, 2024, were analyzed. A retrospective study of 1,222 NVAF patients was conducted. Nine ML algorithms combined with demographic, clinical, and laboratory data were applied to develop prediction models for LAT/SEC in NVAF patients. Feature selection was performed using the least absolute shrinkage and selection operator (LASSO) and multivariate logistic regression. Multiple ML classification models were integrated to identify the optimal model, and Shapley Additive exPlanations (SHAP) interpretation was utilized for personalized risk assessment. Diagnostic performances of the optimal model and the CHA2DS2-VASc scoring system for predicting LAT/SEC risk in NVAF were compared. RESULTS Among 1,078 patients included, the incidence of LAT/SEC was 10.02%. Six independent predictors, including age, non-paroxysmal AF, diabetes, ischemic stroke or thromboembolism (IS/TE), hyperuricemia, and left atrial diameter (LAD), were identified as the most valuable features. The logistic classification model exhibited the best performance with an area under the receiver operating characteristic curve (AUC) of 0.850, accuracy of 0.812, sensitivity of 0.818, and specificity of 0.780 in the test set. SHAP analysis revealed the contribution of explanatory variables to the model and their relationship with LAT/SEC occurrence. The logistic regression model significantly outperformed the CHA2DS2-VASc scoring system, with AUCs of 0.831 and 0.650, respectively (Z = 7.175, P < 0.001). CONCLUSIONS ML proves to be a reliable tool for predicting LAT/SEC risk in NVAF patients. The constructed logistic regression model, along with SHAP interpretation, may serve as a clinically useful tool for identifying high-risk NVAF patients. This enables targeted diagnostic evaluations and the development of personalized treatment strategies based on the findings.
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Affiliation(s)
- Chaoqun Huang
- Department of Cardiovascular Medicine, The First Bethune Hospital of Jilin University, Changchun, Jilin Province, China
| | - Shangzhi Shu
- Department of Cardiovascular Medicine, The First Bethune Hospital of Jilin University, Changchun, Jilin Province, China
| | - Miaomiao Zhou
- Department of Cardiovascular Medicine, The First Bethune Hospital of Jilin University, Changchun, Jilin Province, China
| | - Zhenming Sun
- Department of Cardiovascular Medicine, The First Bethune Hospital of Jilin University, Changchun, Jilin Province, China
| | - Shuyan Li
- Department of Cardiovascular Medicine, The First Bethune Hospital of Jilin University, Changchun, Jilin Province, China
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Kauark-Fontes E, Araújo ALD, Andrade DO, Faria KM, Prado-Ribeiro AC, Laheij A, Rios RA, Ramalho LMP, Brandão TB, Santos-Silva AR. Machine learning prediction model for oral mucositis risk in head and neck radiotherapy: a preliminary study. Support Care Cancer 2025; 33:96. [PMID: 39808310 DOI: 10.1007/s00520-025-09158-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2024] [Accepted: 01/07/2025] [Indexed: 01/16/2025]
Abstract
PURPOSE Oral mucositis (OM) reflects a complex interplay of several risk factors. Machine learning (ML) is a promising frontier in science, capable of processing dense information. This study aims to assess the performance of ML in predicting OM risk in patients undergoing head and neck radiotherapy. METHODS Clinical data were collected from 157 patients with oral and oropharyngeal squamous cell carcinoma submitted to radiotherapy. Grade 2 OM or higher was considered (NCI). Two dataset versions were used; in the first version, all data were considered, and in the second version, a feature selection was added. Age, smoking status, surgery, radiotherapy prescription dose, treatment modality, histopathological differentiation, tumor stage, presence of oral cancer lesion, and tumor location were selected as key features. The training process used a fivefold cross-validation strategy with 10 repetitions. A total of 4 algorithms and 3 scaling methods were trained (12 models), without using data augmentation. RESULTS A comparative assessment was performed. Accuracy greater than 55% was considered. No relevant results were achieved with the first version, closest performance was Decision Trees with 52% of accuracy, 42% of sensitivity, and 60% of specificity. For the second version, relevant results were achieved, K-Nearest Neighbors outperformed with 64% accuracy, 58% sensitivity, and 68% specificity. CONCLUSION ML demonstrated promising results in OM risk prediction. Model improvement was observed after feature selection. Best result was achieved with the KNN model. This is the first study to test ML for OM risk prediction using clinical data.
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Affiliation(s)
- Elisa Kauark-Fontes
- Department of Propaedeutic and Integrated Clinic, Universidade Federal da Bahia (UFBA), Salvador, Bahia, Brazil.
| | - Anna Luiza Damaceno Araújo
- Head and Neck Surgery Department, Paulo Medical School (FMUSP), University of São, São Paulo, São Paulo, Brazil
| | | | - Karina Morais Faria
- Dental Oncology Service, Instituto Do Câncer Do Estado de São Paulo (ICESP), Faculdade de Medicina da Universidade de São Paulo (FMUSP), São Paulo, Brazil
| | - Ana Carolina Prado-Ribeiro
- Dental Oncology Service, Instituto Do Câncer Do Estado de São Paulo (ICESP), Faculdade de Medicina da Universidade de São Paulo (FMUSP), São Paulo, Brazil
| | - Alexa Laheij
- Department of Oral Medicine, Academic Center for Dentistry Amsterdam, University of Amsterdam and VU University Amsterdam, Amsterdam, Netherlands
- Department of Oral and Maxillofacial Surgery, Amsterdam UMC, VU University Amsterdam, Amsterdam, the Netherlands
| | - Ricardo Araújo Rios
- Department of Computer Science, Federal University of Bahia, Salvador, Brazil
| | | | - Thais Bianca Brandão
- Dental Oncology Service, Instituto Do Câncer Do Estado de São Paulo (ICESP), Faculdade de Medicina da Universidade de São Paulo (FMUSP), São Paulo, Brazil
| | - Alan Roger Santos-Silva
- Oral Diagnosis Department, Faculdade de Odontolodia de Piracicaba, Universidade de Campinas (UNICAMP), Piracicaba, São Paulo, Brazil
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Zhao Z, Chen T, Liu Q, Hu J, Ling T, Tong Y, Han Y, Zhu Z, Duan J, Jin Y, Fu D, Wang Y, Pan C, Keyoumu R, Sun L, Li W, Gao X, Shi Y, Dou H, Liu Z. Development and Validation of a Diagnostic Model for Stanford Type B Aortic Dissection Based on Proteomic Profiling. J Inflamm Res 2025; 18:533-547. [PMID: 39816951 PMCID: PMC11734266 DOI: 10.2147/jir.s494191] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2024] [Accepted: 01/06/2025] [Indexed: 01/18/2025] Open
Abstract
Purpose Stanford Type B Aortic Dissection (TBAD), a critical aortic disease, has exhibited stable mortality rates over the past decade. However, diagnostic approaches for TBAD during routine health check-ups are currently lacking. This study focused on developing a model to improve the diagnosis in a population. Patients and Methods Serum biomarkers were investigated in 88 participants using proteomic profiling combined with machine learning. The findings were validated using ELISA in other 80 participants. Subsequently, a diagnostic model for TBAD integrating biomarkers with clinical indicators was developed and assessed using machine learning. Results Six differentially expressed proteins (DEPs) were identified through proteomic profiling and machine learning in discovery and derivation cohorts. Five of these (GDF-15, IL6, CD58, LY9, and Siglec-7) were further verified through ELISA validation within the validation cohort. In addition, ten blood-related indicators were selected as clinical indicators. Combining biomarkers and clinical indicators, the machine learning-based models performed well (AUC of the biomarker model = 0.865, AUC of the clinical model = 0.904, and AUC of the combined model = 0.909) using relative quantitation. The performance of the three models was verified (AUC of biomarker model = 0.866, AUC of clinical model = 0.868, and AUC of combined model = 0.886) using absolute quantitation. Crucially, the combined models outperformed individual biomarkers and clinical models, demonstrating superior efficacy. Conclusion Using proteomic profiling, we identified serum IL-6, GDF-15, CD58, LY9, and Siglec-7 as TBAD biomarkers. The machine-learning-based diagnostic model exhibited significant potential for TBAD diagnosis using only blood samples within the population.
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Affiliation(s)
- Zihe Zhao
- Department of Vascular Surgery, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, People’s Republic of China
| | - Taicai Chen
- The State Key Laboratory for Novel Software Technology, Nanjing University, Nanjing, People’s Republic of China
- National Institute of Healthcare Data Science, Nanjing University, Nanjing, People’s Republic of China
| | - Qingyuan Liu
- Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, People’s Republic of China
| | - Jianhang Hu
- Department of Vascular Surgery, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, People’s Republic of China
| | - Tong Ling
- The State Key Laboratory for Novel Software Technology, Nanjing University, Nanjing, People’s Republic of China
- National Institute of Healthcare Data Science, Nanjing University, Nanjing, People’s Republic of China
| | - Yuanhao Tong
- Department of Thoracic Surgery, BenQ Medical Center, Affiliated BenQ Hospital of Nanjing Medical University, Nanjing, Jiangsu, People’s Republic of China
| | - Yuexue Han
- Department of Vascular Surgery, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, People’s Republic of China
| | - Zhengyang Zhu
- Department of Radiology, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, People’s Republic of China
| | - Jianfeng Duan
- Department of Critical Care Medicine, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, People’s Republic of China
| | - Yi Jin
- Department of Vascular Surgery, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, People’s Republic of China
| | - Dongsheng Fu
- Department of Vascular Surgery, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, People’s Republic of China
| | - Yuzhu Wang
- Department of Vascular Surgery, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, People’s Republic of China
| | - Chaohui Pan
- Department of Vascular Surgery, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, People’s Republic of China
| | - Reyaguli Keyoumu
- Department of Vascular Surgery, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, People’s Republic of China
| | - Lili Sun
- Department of Vascular Surgery, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, People’s Republic of China
| | - Wendong Li
- Department of Vascular Surgery, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, People’s Republic of China
| | - Xia Gao
- Department of Otolaryngology, Head and Neck Surgery, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, People’s Republic of China
- Jiangsu Provincial Key Medical Discipline (Laboratory), Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, People’s Republic of China
| | - Yinghuan Shi
- The State Key Laboratory for Novel Software Technology, Nanjing University, Nanjing, People’s Republic of China
- National Institute of Healthcare Data Science, Nanjing University, Nanjing, People’s Republic of China
| | - Huan Dou
- The State Key Laboratory of Pharmaceutical Biotechnology, Division of Immunology, Medical School, Nanjing University, Nanjing, People’s Republic of China
- Jiangsu Key Laboratory of Molecular Medicine, Medical School, Nanjing University, Nanjing, People’s Republic of China
| | - Zhao Liu
- Department of Vascular Surgery, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, People’s Republic of China
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Pan J, Guo T, Kong H, Bu W, Shao M, Geng Z. Prediction of mortality risk in patients with severe community-acquired pneumonia in the intensive care unit using machine learning. Sci Rep 2025; 15:1566. [PMID: 39794470 PMCID: PMC11723911 DOI: 10.1038/s41598-025-85951-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2024] [Accepted: 01/07/2025] [Indexed: 01/13/2025] Open
Abstract
The aim of this study was to develop and validate a machine learning-based mortality risk prediction model for patients with severe community-acquired pneumonia (SCAP) in the intensive care unit (ICU). We collected data from two centers as the development and external validation cohorts. Variables were screened using the Recursive Feature Elimination method. Five machine learning algorithms were used to build predictive models. Models were evaluated through nested cross-validation to select the best one. The model was interpreted using Shapley Additive Explanations. We selected the optimal model to generate the web calculator. A total of 23 predictive features were selected. The Light Gradient Boosting Machine (LightGBM) model had an area under the receiver operating characteristic curve (AUC) of 0.842 (95% CI: 0.757-0.927), with an external 5-fold cross-validation average AUC of 0.842 ± 0.038, which was superior to the other models. External validation results also demonstrated good performance by the LightGBM model with an AUC of 0.856 (95% CI: 0.792-0.921). Based on this, we generated a web calculator by combining five high importance predictive factors. The LightGBM model was confirmed to be efficient and stable in predicting the mortality risk of patients with SCAP admitted to the ICU. The web calculator based on the LightGBM model can provide clinicians with a prognostic evaluation tool.
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Affiliation(s)
- Jingjing Pan
- Department of Pulmonary and Critical Care Medicine, Anhui Chest Hospital, Hefei, China
- Department of Critical Care Medicine, The First Affiliated Hospital of Anhui Medical University, Hefei, China
| | - Tao Guo
- Center for Biomedical Imaging, University of Science and Technology of China, Hefei, China
| | - Haobo Kong
- Department of Pulmonary and Critical Care Medicine, Anhui Chest Hospital, Hefei, China
| | - Wei Bu
- Department of Critical Care Medicine, The First Affiliated Hospital of Anhui Medical University, Hefei, China
| | - Min Shao
- Department of Critical Care Medicine, The First Affiliated Hospital of Anhui Medical University, Hefei, China.
| | - Zhi Geng
- Department of Neurology, The First Affiliated Hospital of Anhui Medical University, Hefei, China.
- Anhui Province Key Laboratory of Cognition and Neuropsychiatric Disorders, Hefei, China.
- Collaborative Innovation Center of Neuropsychiatric Disorders and Mental Health, Hefei, China.
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Liu Y, Tang Y, Li Z, Yu P, Yuan J, Zeng L, Wang C, Li S, Zhao L. Prediction of clinical efficacy of acupuncture intervention on upper limb dysfunction after ischemic stroke based on machine learning: a study driven by DSA diagnostic reports data. Front Neurol 2025; 15:1441886. [PMID: 39839881 PMCID: PMC11747147 DOI: 10.3389/fneur.2024.1441886] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2024] [Accepted: 12/09/2024] [Indexed: 01/23/2025] Open
Abstract
Objective To develop a machine learning-based model for predicting the clinical efficacy of acupuncture intervention in patients with upper limb dysfunction following ischemic stroke, and to assess its potential role in guiding clinical practice. Methods Data from 1,375 ischemic stroke patients with upper limb dysfunction were collected from two hospitals, including medical records and Digital Subtraction Angiography (DSA) reports. All patients received standardized acupuncture treatment. After screening, 616 datasets were selected for analysis. A prediction model was developed using the AutoGluon framework, with three outcome measures as endpoints: the National Institutes of Health Stroke Scale (NIHSS), Fugl-Meyer Assessment for Upper Extremity (FMA-UE), and the Modified Barthel Index (MBI). Results The prediction model demonstrated high accuracy for the three endpoints, with prediction accuracies of 84.3% for NIHSS, 77.8% for FMA-UE, and 88.1% for MBI. Feature importance analysis identified the M1 segment of the Middle Cerebral Artery (MCA), the origin of the Internal Carotid Artery (ICA), and the C1 segment of the ICA as the most critical factors influencing the model's predictions. Notably, the MBI emerged as the most sensitive outcome measure for evaluating patient response to acupuncture treatment. Additionally, secondary analysis revealed that the number of sites with cerebral vascular stenosis (specifically 1 and 3 sites) had a significant impact on the final model's predictions. Conclusion This study highlights the M1 segment, the origin of the ICA, and the C1 segment as key stenotic sites affecting acupuncture treatment efficacy in stroke patients with upper limb dysfunction. The MBI was found to be the most responsive outcome measure for evaluating treatment sensitivity in this cohort.
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Affiliation(s)
- Yaning Liu
- School of Acu-Mox and Tuina, Chengdu University of Traditional Chinese Medicine, Chengdu, China
| | - Yuqi Tang
- School of Acu-Mox and Tuina, Chengdu University of Traditional Chinese Medicine, Chengdu, China
| | - Zechen Li
- School of Automation, Chongqing University, Chongqing, China
| | - Pei Yu
- School of Acu-Mox and Tuina, Chengdu University of Traditional Chinese Medicine, Chengdu, China
| | - Jing Yuan
- School of Acu-Mox and Tuina, Chengdu University of Traditional Chinese Medicine, Chengdu, China
| | - Lichuan Zeng
- Department of Radiology, Hospital of Chengdu University of Traditional Chinese Medicine, Chengdu, China
| | - Can Wang
- School of Acu-Mox and Tuina, Chengdu University of Traditional Chinese Medicine, Chengdu, China
| | - Su Li
- School of Automation, Chongqing University, Chongqing, China
| | - Ling Zhao
- School of Acu-Mox and Tuina, Chengdu University of Traditional Chinese Medicine, Chengdu, China
- Sichuan Provincial Acupuncture Clinical Medicine Research Center, Chengdu, China
- Key Laboratory of Acupuncture for Senile Disease, Ministry of Education, Chengdu, China
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