Basic Study Open Access
Copyright ©The Author(s) 2022. Published by Baishideng Publishing Group Inc. All rights reserved.
World J Gastrointest Oncol. Oct 15, 2022; 14(10): 1933-1948
Published online Oct 15, 2022. doi: 10.4251/wjgo.v14.i10.1933
VCAN, expressed highly in hepatitis B virus-induced hepatocellular carcinoma, is a potential biomarker for immune checkpoint inhibitors
Mu-Qi Wang, Ya-Ping Li, Yan Tian, Xin Zhang, Juan-Juan Shi, Shuang-Suo Dang, Xiao-Li Jia, Department of Infectious Diseases, The Second Affiliated Hospital of Xi’an Jiaotong University, Xi’an 710004, Shaanxi Province, China
Meng Xu, Department of General Surgery, The Second Affiliated Hospital of Xi’an Jiaotong University, Xi’an 710004, Shaanxi Province, China
Yuan Wu, Department of Critical Care Medicine, The Second Affiliated Hospital of Xi’an Jiaotong University, Xi’an 710004, Shaanxi Province, China
ORCID number: Mu-Qi Wang (0000-0003-2314-8983); Ya-Ping Li (0000-0002-0900-5559); Meng Xu (0000-0002-6118-9965); Yan Tian (0000-0002-5967-6887); Yuan Wu (0000-0002-0413-4204); Xin Zhang (0000-0002-5966-0471); Juan-Juan Shi (0000-0002-5626-9821); Shuang-Suo Dang (0000-0003-0918-9535); Xiao-Li Jia (0000-0001-8865-9771).
Author contributions: Jia XL and Dang SS designed the study; Zhang X, Wu Y, Li YP, and Jia XL collected all samples in the study; Wang MQ, Wu Y, and Tian Y collected the data; Wang MQ and Xu M performed the statistical analysis; Wang MQ, Li YP, and Jia XL drafted the manuscript; Xu M, Jia XL, and Li YP made critical revisions to the manuscript; Jia XL, Xu M and Shi JJ provided financial support; and all authors read and approved the manuscript.
Supported by the National Natural Science Foundation of China, No. 31500650 and 81902449; the Key Research & Development Program-Social Development of Shaanxi Province, No. 2020SF-063; and Shaanxi Key Research and Development Plans, No. 2021SF-227.
Institutional review board statement: The study was reviewed and approved by the Medical Ethics Committees of the Second Affiliated Hospital of Xi’an Jiaotong University (Approval No. 2019-1093).
Conflict-of-interest statement: All the authors report no relevant conflicts of interest for this article.
Data sharing statement: No additional data are available.
Open-Access: This article is an open-access article that was selected by an in-house editor and fully peer-reviewed by external reviewers. It is distributed in accordance with the Creative Commons Attribution NonCommercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited and the use is non-commercial. See: https://creativecommons.org/Licenses/by-nc/4.0/
Corresponding author: Xiao-Li Jia, Doctor, Chief Doctor, Department of Infectious Diseases, The Second Affiliated Hospital of Xi’an Jiaotong University, No. 157 Xiwu Road, Xincheng District, Xi’an 710004, Shaanxi Province, China. drjxl.123@xjtu.edu.cn
Received: May 21, 2022
Peer-review started: May 21, 2022
First decision: July 13, 2022
Revised: July 23, 2022
Accepted: September 12, 2022
Article in press: September 12, 2022
Published online: October 15, 2022
Processing time: 145 Days and 20 Hours

Abstract
BACKGROUND

As a proteoglycan, VCAN exists in the tumor microenvironment and regulates tumor proliferation, invasion, and metastasis, but its role in hepatocellular carcinoma (HCC) has not yet been elucidated.

AIM

To investigate the expression and potential mechanism of action of VCAN in HCC.

METHODS

Based on The Cancer Genome Atlas Liver Hepatocellular Carcinoma dataset, we explored the correlation between VCAN expression and clinical features, and analyzed the prognosis of patients with high and low VCAN expression. The potential mechanism of action of VCAN was explored by Gene Ontology analysis, Kyoto Encyclopedia of Genes and Genomes analysis, and gene set enrichment analysis. We also explored immune cell infiltration, immune checkpoint gene expression, and sensitivity of immune checkpoint [programmed cell death protein 1 (PD-1)/cytotoxic T lymphocyte antigen 4 (CTLA4)] inhibitor therapy in patients with different VCAN expression. VCAN mRNA expression and VCAN methylation in peripheral blood were tested in 100 hepatitis B virus (HBV)-related patients (50 HCC and 50 liver cirrhosis).

RESULTS

VCAN was highly expressed in HCC tissues, which was associated with a poor prognosis in HCC patients. No significant difference was found in VCAN mRNA expression in blood between patients with HBV-related cirrhosis and those with HCC, but there was a significant difference in VCAN methylation between the two groups. The correlation between VCAN and infiltrations of several different tumor immune cell types (including B cells, CD8+ T cells, and eosinophils) was significantly different. VCAN was strongly related to immune checkpoint gene expression and tumor mutation burden, and could be a biomarker of sensitivity to immune checkpoint (PD1/CTLA4) inhibitors. In addition, VCAN mRNA expression was associated with hepatitis B e antigen, HBV DNA, white blood cells, platelets, cholesterol, and coagulation function.

CONCLUSION

High VCAN level could be a possible biomarker for poor prognosis of HCC, and its immunomodulatory mechanism in HCC warrants investigation.

Key Words: VCAN, Hepatocellular carcinoma, Hepatitis B virus, Immune checkpoints, Tumor microenvironment

Core Tip: VCAN expression is significantly higher in hepatocellular carcinoma (HCC) tumor tissue than in adjacent tissue, and high VCAN level may be a possible biomarker for the diagnosis and prognosis of HCC. VCAN is associated with hepatitis B e antigen in hepatitis B virus infected patients. VCAN may play a role in HCC through the extracellular matrix signaling pathway and inflammatory immune response, and is a potential biomarker for immune checkpoint (programmed cell death protein 1/cytotoxic T lymphocyte antigen 4) inhibitors.



INTRODUCTION

According to the GLOBOCAN 2020 estimates, the number of new liver cancer cases in China (410038) accounted for 45.7% of the global total (905077), and the fatality rate ranks second among malignant tumors in China[1,2]. In contrast to Western countries, 92.6% of liver cancer in China is caused by chronic hepatitis B virus (HBV) infection [86% pure HBV infection and 6.7% coinfection of HBV and hepatitis C virus (HCV)], which often occurs with cirrhosis and has a worse prognosis[3].

Due to a strong correlation between the occurrence of hepatocellular carcinoma (HCC) and the continuous immune inflammatory response, it is necessary to explore whether and how the tumor microenvironment (TME) acts on the progression of HCC[4]. The TME is where tumor cells exist and includes the extracellular matrix (ECM), fibroblasts, blood vessels, and various immune cells[5]. The ECM supports the structure of connective tissues and regulates cell functions, which consists of fibers, proteoglycans, hyaluronic acid, and glycoproteins[6]. In the TME, nonmalignant cells can help tumor cells proliferate, invade, and metastasize[7]. The TME in HCC plays an important role in promoting tumor progression and inhibiting antitumor immunity. For example, tumor-associated macrophages (TAMs) are important immune cells involved in the microenvironment of HCC, and the low presence of CD86+ TAMs and high presence of CD206+ TAMs are significantly associated with aggressive tumor phenotypes, poor overall survival (OS), and shortened recurrence time[8]. The use of various targeted TME drugs for advanced unresectable HCC has been written into the guidelines[9-11]. VCAN is a proteoglycan that exists in the ECM of the TME, binds to integrins and integrin receptors or other ECM components on the cell surface, interacts with various cells in the TME, and participates in the adhesion, proliferation, migration, and angiogenesis of tumor cells[12]. VCAN promotes the invasion and metastasis of HCC in cell experiments[13,14], but the mechanism is still unclear. In addition, VCAN mRNA expression in human liver cancer tissues is higher than that in adjacent tissues[15], but whether VCAN could be a marker for the early diagnosis of HCC needs confirmation.

This study enrolled 100 patients with HBV-related liver diseases, including 50 with HCC and 50 with liver cirrhosis. VCAN mRNA expression and DNA methylation in serum were detected to analyze their correlation with clinical features. By using public datasets, we explored VCAN mRNA expression in HCC patients, the impact of VCAN on the clinical characteristics of patients, and the possible immune mechanism of VCAN in HBV-related HCC. Figure 1 more clearly describes the content of our study. We hope that this research will help to clarify the role of VCAN in HCC.

Figure 1
Figure 1 Experimental design of the study. HCC: Hepatocellular carcinoma; TCGA: The Cancer Genome Atlas; FC: Fold change; FDR: False discovery rate; GO: Gene Ontology; KEEG: Kyoto Encyclopedia of Genes and Genomes; TMB: Tumor mutation burden; PD-1: Programmed cell death protein 1; CTLA4: Cytotoxic T lymphocyte-associated antigen-4.
MATERIALS AND METHODS
Dataset download

The RNA expression profiles and corresponding clinicopathological information of The Cancer Genome Atlas Liver Hepatocellular Carcinoma (TCGA-LIHC) were downloaded from TCGA database (https://portal.gdc.cancer.gov/repository?facetTab=cases) on May 30, 2021. The transcriptome data of 374 cancer tissues and 50 paracancer tissues were annotated to extract the expression of VCAN.

Correlation between VCAN expression and clinical characteristics

VCAN mRNA expression in different cancer types was analyzed online with TIMER[16] (https://cistrome.shinyapps.io/timer/). R3.6.1 was used to perform differential analysis of VCAN mRNA in tumor tissues and adjacent tissues of patients from TCGA-LIHC. The Kruskal-Wallis test was performed to evaluate the correlation between VCAN expression and the clinical characteristics of TCGA-LIHC patients. The OS of HCC patients with high and low expression of VCAN was compared by Kaplan-Meier analysis and the log-rank test with the survival package in R3.6.1.

Clinical validation of VCAN expression in HBV related cirrhosis and HCC patients

During September 2021 to April 2022, 100 hospitalized HBV-related patients (50 with HCC and 50 with liver cirrhosis) were enrolled in the Second Affiliated Hospital of Xi’an Jiaotong University. Patients with HCC and liver cirrhosis had to meet the diagnostic criteria of Guidelines for Diagnosis and Treatment of Primary Liver Cancer in China (2019 edition)[17] and The Guidelines of Prevention and Treatment for Chronic Hepatitis B (2019 version)[18]. Among 50 HBV-related HCC patients, we collected ten pairs of tumor tissues and adjacent tissues of patients who underwent surgical therapy, and tumor-adjacent tissues were used as a control group to perform immunohistochemistry. The study was reviewed and approved by the Medical Ethics Committees of the Second Affiliated Hospital of Xi’an Jiaotong University (Approval No. 2019-1093). Informed consent was required from all participants.

Quantitative real-time polymerase chain reaction

Total RNA was extracted from the mononuclear cells of collected peripheral blood with TRIzol reagent (Invitrogen, United States). Using total RNA as a template, cDNA was synthesized by reverse transcription, and then real-time fluorescent quantitative polymerase chain reaction (PCR) was performed using the SYBR® Premix Ex Taq™ II kit (Takara, Japan). The primer sequences of VCAN (primers synthesized by the Shanghai Shenggong Biological Engineering Co. Ltd.) are: Forward, 5’-TGGCATGAGAATGGCCAGTGGA-3’ and reverse, 5’- AAGCCAGAGACCCTCCCCCA-3’. OAZ1 was used as the internal reference. The primer sequences of OAZ1 (primers synthesized by the Shanghai Shenggong Biological Engineering) are: Forward, 5’-AGCAAGGACAGCTTTGCAGTTCTC-3’ and reverse, 5’- GATGCCCCGGTCTCACAATC-3’. The final Ct value of the target gene was the average of the Ct values of three replicate wells. The relative expression of VCAN mRNA was calculated according to the following formula: Relative expression of the target gene = 2-ΔCt, ΔCt = Ct(VCAN) - Ct(OAZ1).

DNA extraction and methylation detection

The peripheral venous blood of the participants was collected, and genomic DNA was extracted with a blood DNA extraction kit (Tiangen, Beijing, China). The extracted genomic DNA was treated with bisulfite using an EZ DNA Methylation-Gold Kit (Zymo, Irvine, CA, United States) and then subjected to high-throughput sequencing after PCR amplification to obtain DNA methylation results.

Immunohistochemistry

Tissue samples were boiled in Tris/EDTA buffer (pH 9.0) for antigen retrieval, and immunohistochemistry was performed with primary antibody (EPR12277; Abcam, The United Kingdom), according to the SP Rabbit HRP Kit instructions (CE2035S, CWBIO, China).

VCAN function prediction

VENNY 2.1.0 (https://bioinfogp.cnb.csic.es/tools/venny/index.html) was used to draw a Venn diagram containing coexpressed genes of VCAN (P < 0.05, r > 0.6), and differentially expressed genes between the high VCAN group and low VCAN group (median cut off, |log2 Fold change| >2, P < 0.05). These intersection genes were strongly related to the potential immune mechanism of VCAN in HCC, which were considered as VCAN-related genes. VCAN-related genes were annotated by Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEEG) gene set function using the clusterProfiler package of R3.6.1.

Gene set enrichment analysis (GSEA) was performed on the group with high and low expression (median as the cutoff) of VCAN in TCGA-LIHC using GSEA 4.0.3. KEGG gene set (c2.cp.kegg. v7.4.symbols.gmt) was applied to explore the potential signaling pathway of VCAN in HCC (false discovery rate < 0.05)[19]. The proteins that may interact with VCAN were obtained with STRING (https://www.string-db.org/), and a corresponding protein-protein interaction (PPI) network diagram was drawn.

TME immune score and stroma score of TCGA-LIHC liver cancer tissues were calculated based on estimated algorithm using the R3.6.1 package estimate. Different algorithms (ssGSEA, CIBERSORTx, and TIMER) were used to evaluate intratumoral immune cell composition in patients with high and low expression of VCAN in TCGA-LIHC[16,20,21]. Tumor mutation burden (TMB) was calculated using the TCGA mutations package of R3.6.1. An immune checkpoint genes list was obtained from the published literature[22]. These gene expression data were extracted from transcripts of TCGA-LIHC to perform correlation analysis with VCAN expression.

Statistical analysis

All analyses and image preparation were performed using SPSS 22.0 (SPSS Inc., Chicago, IL), GraphPad Prism 5.0 (GraphPad, United States), Origin 2021b (OriginLab, United States), and R3.6.1. Normally distributed measurement data are represented by the mean ± SD, and those with a skewed distribution by the median (25%, 75%). Numerical data are represented by the number of cases. The means of two groups were compared by the t-test or Wilcoxon rank-sum test, and those of multiple groups were compared by analysis of variance or Kruskal-Wallis nonparametric test. The rates of multiple groups were compared by the χ2 test. P < 0.05 indicated that the difference was statistically significant.

RESULTS
Clinical characteristics and VCAN expression in HCC patients in public databases

VCAN was highly expressed in a variety of tumor tissues, including breast cancer, cholangiocarcinoma, colon cancer, esophageal cancer, glioma, head and neck squamous cell carcinoma, renal chromophore cell carcinoma, renal papillary cell carcinoma, HCC, lung adenocarcinoma, lung squamous cell carcinoma, gastric cancer, and thyroid cancer (Figure 2A). VCAN was significantly overexpressed in tumors in both paired and independent samples for patients from TCGA-LIHC (Figures 2B and C).

Figure 2
Figure 2 VCAN mRNA expression in tumor tissue and adjacent tissue in The Cancer Genome Atlas Liver Hepatocellular Carcinoma. A: VCAN mRNA expression in different types of tumors; B: VCAN mRNA expression in 374 tumor tissues and 50 normal tissues from The Cancer Genome Atlas Liver Hepatocellular Carcinoma (TCGA-LIHC); C: VCAN mRNA expression in 50 paired tumor tissues and normal tissues from TCGA-LIHC; D: Kaplan-Meier analysis for low VCAN and high VCAN expression (median as cutoff) in TCGA-LIHC. aP < 0.05, bP < 0.01, cP < 0.001. TPM: Transcripts per kilobase of exon model per million mapped reads; HR: Hazard ratio.
Relationship between VCAN mRNA and clinical features in HCC patients in public databases

The patients were divided into two groups by the median of VCAN mRNA expression, and Kaplan-Meier analysis indicated that the survival rate of the low VCAN expression group was significantly higher than that of the high-VCAN expression group in patients from TCGA-LIHC (Figure 2D). Univariate regression analysis showed that high level of VCAN was a marker of poor prognosis in HCC patients (Figure 3). There were significant differences in VCAN mRNA according to age, gender, pathological stage, and a-fetoprotein level of patients from TCGA-LIHC (Table 1).

Figure 3
Figure 3 Univariate and multivariate Cox regression forest plots of The Cancer Genome Atlas Liver Hepatocellular Carcinoma. HR: Hazard ratio; CI: Confidence interval.
Table 1 Correlation between VCAN expression and clinical characteristics in The Cancer Genome Atlas Liver Hepatocellular Carcinoma.
Characteristic
Low VCAN
High VCAN
P value
n187187
Age, n (%)0.020
6077 (20.6)100 (26.8)
> 60110 (29.5)86 (23.1)
Gender, n (%)0.015
Female49 (13.1)72 (19.3)
Male138 (36.9)115 (30.7)
Pathologic stage, n (%)0.042
I & II138 (39.4)122 (34.8)
III & IV41 (11.7)45 (14.0)
Histologic grade, n (%)0.090
G134 (9.2)21 (5.7)
G288 (23.8)90 (24.4)
G354 (14.6)70 (19)
G48 (2.2)4 (1.1)
AFP (ng/mL), median (IQR)9 (3.5, 140)23 (5, 419)0.039
Clinical characteristics of HBV-related HCC and cirrhosis, and VCAN mRNA and methylation levels

The clinical characteristics and relevant VCAN mRNA levels in the HBV-related HCC and cirrhosis patients are shown in Table 2. The baseline data including age, sex, antiviral therapy within 6 mo, hepatitis B e antigen (HBeAg), and Child-Pugh class were not significantly different between the two groups. There was no significant difference in VCAN mRNA between the two groups (Figure 4A), but there was a significant difference in VCAN methylation (Figure 4B). The methylation levels of each CpG site in the two groups of patients are shown in Figure 4C, which indicates that cg82767790, cg82767780, and cg82768850 differed significantly (P < 0.05). The correlation analysis between VCAN mRNA expression and the methylation levels of each site is shown in Figure 4D, which indicates that VCAN mRNA expression was not significantly related to any CpG sites of VCAN.

Figure 4
Figure 4 Expression of VCAN mRNA and DNA methylation in patients with hepatitis B virus-related hepatocellular carcinoma and cirrhosis. A: VCAN mRNA expression in the serum of hepatitis B virus (HBV)-related patients and controls; B: VCAN DNA methylation in the blood of HBV-related patients; C: Box diagram of VCAN CpG methylation in HBV-related patients; D: Correlation heatmap between VCAN mRNA and the methylation of each CpG site in blood. ns: P > 0.05, aP < 0.05. HCC: Hepatocellular carcinoma.
Table 2 Clinical features and VCAN expression in patients with hepatocellular carcinoma and liver cirrhosis caused by hepatitis B virus.
Clinical feature
HCC (n = 50)
Liver cirrhosis (n = 50)
P value
Age57.55 ± 1.8054.05 ± 2.220.227
Sex (male/female)8/3230/100.705
Anti-virus treatment (yes/no)26/1420/200.337
HBeAg (+/-)7/336/340.144
HBV-DNA (IU/mL): ≤ 102/> 10222/1811/290.100
Child-Pugh: A/B&C28/178/320.168
VCAN mRNA (%)4.45 ± 0.563.83 ± 0.610.147
VCAN methylation0.056 ± 0.0090.047 ± 0.0050.022

According to the immunohistochemical results in the Human Protein Atlas (HPA)[23], VCAN is mainly expressed in the ECM in liver tumor tissues (Figure 5A). Immunohistochemical results of hepatocellular and adjacent tumor tissue showed that VCAN was expressed more in tumor tissue than in adjacent tissue, and VCAN was mainly distributed in the ECM (Figure 5B), which was similar to the result in the HPA (Figure 5A).

Figure 5
Figure 5 Immunohistochemical staining for VCAN in tumor tissue and adjacent tissue. A: Immunohistochemical results of VCAN in normal liver tissue and liver tumor tissue in the Human Protein Atlas; B: Immunohistochemical results of VCAN in liver tumor tissue and tumor-adjacent tissue from patients.
Correlation between VCAN expression and clinical features in HBV-related HCC and cirrhosis

The participants were divided into either a group of patients with high VCAN mRNA expression or a group of patients with low VCAN mRNA expression in blood using the median as the cutoff. Comparison of clinical characteristics between the two groups showed that the expression of VCAN was associated with HBeAg, HBV DNA, total cholesterol, low density lipoprotein-cholesterol, white blood cells, platelets, and prothrombin activity (Table 3).

Table 3 Correlation between VCAN mRNA expression and clinical features.
VariableVCAN RNA expression (median as cutoff)
P value
Low
High
Age56.60 ± 8.4555.00 ± 9.820.552
Male/female39/1138/120.705
Anti-viral treatment/no treatment23/2735/150.110
HBeAg (+)/(-)21/295/450.028
HBV-DNA (IU/mL): ≤ 102/> 10213/3734/160.025
Child-Pugh: A/B&C35/1531/190.490
AFP (ng/mL)11.59 (3.47, 135.68)21.43 (1.84, 210.88)0.698
Total bilirubin (μmol/L)26.37 (18.70, 50.25) 16.26 (11.47, 29.14)0.035
Direct bilirubin (μmol/L)8.44 (6.64, 27.92)5.28 (3.51, 13.96)0.043
Indirect bilirubin (μmol/L)17.21 (12.23, 22.83)10.51 (6.78, 13.39)0.007
Total cholesterol (mmol/L) 2.90 ± 0.823.56 ± 0.810.015
LDL-C (mmol/L)1.74 ± 0.592.25 ± 0.590.009
WBC (× 109/L)3.54 ± 1.406.12 ± 2.40< 0.001
Neutrophil (%)58.69 ± 13.2457.31 ± 14.480.302
Platelet (× 109/L)76.60 ± 49.14172.6 ± 87.01< 0.001
Prothrombin time (s)11.85 (10.85, 15.55)11.15 (10.43, 11.83)0.030
Prothrombin activity (%)75.64 ± 21.1589.37 ± 12.740.018
Fibrinogen (mg/dL)186.00 ± 49.53267.55 ± 111.170.006
Prediction of mechanism of action of VCAN

The PPI network diagram (Figure 6A) consists of proteins potentially interacting with VCAN, which are mainly proteoglycan molecules, ECM molecules, and inflammatory factors. After co-expression analysis and differential expression analysis of high and low expression of VCAN, we obtained 687 VCAN co-expressed genes and 820 differentially expressed genes; 202 intersection genes (VCAN-related genes) are listed in Figure 6B.

Figure 6
Figure 6 Possible mechanism of action of VCAN in hepatocellular carcinoma. A: Protein-protein interaction analysis of VCAN on STRING; B: Venn diagram for VCAN co-expressed genes and differentially expressed genes in high VCAN group and low VCAN group; C: Gene Ontology analysis of the 202 intersection genes; D: Kyoto Encyclopedia of Genes and Genomes analysis of the 202 intersection genes. HMMR: Hyaluronan mediated motility receptor; FBLN1: Fibulin-1; FBN1: Fibrillin-1; TLR2: Toll-like receptor 2; SELL: L-selectin; ITGAV: Integrin alpha-V; ITGA5: Integrin alpha-5; GPC1: Glypican-1; SDCBP: Syntenin-1; ERBB2: Receptor tyrosine-protein kinase erbB-2; FN1: Fibronectin 1; ITGB1: Integrin beta-1; ITGA4: Integrin alpha-4; CD44: CD44 antigen; TIRAP: Toll/interleukin-1 receptor domain-containing adapter protein; HMGB1: High mobility group protein B1; SDC: Syndecan; SPP1: Secreted phosphoprotein 1.
GO analysis, KEGG analysis, and GSEA

The 202 intersection genes were subjected to functional annotation (Figure 6C). These genes mainly participate in biological processes involved in ECM organization, extracellular structure organization, and connective tissue development. VCAN-related genes participate in the formation of cellular components including collagen-containing ECM, endoplasmic reticulum lumen, collagen trimer, and basement membrane, and they performed molecular functions such as ECM structural constituents, glycosaminoglycan binding, and sulfur compound binding. KEGG analysis and GSEA showed that VCAN-related genes were mainly enriched in the PI3K-AKT signaling pathway, focal adhesion, protein digestion and absorption, ECM-receptor interaction, and proteoglycans in cancer (Table 4, Figure 6D).

Table 4 Top 20 gene enrichment sets of highly expressed VCAN.
Name
Size
ES
NES
NOM P value
FDR Q value
KEGG_FC_GAMMA_R_MEDIATED_PHAGOCYTOSIS96-0.739-2.154< 0.0015.13E-04
KEGG_PATHOGENIC_ESCHERICHIA_COLI_INFECTION56-0.720-2.046< 0.0015.91E-04
KEGG_ECM_RECEPTOR_INTERACTION84-0.716-2.162< 0.0018.55E-04
KEGG_AXON_GUIDANCE129-0.695-2.191< 0.0010.0015376
KEGG_DILATED_CARDIOMYOPATHY90-0.680-2.112< 0.0014.91E-04
KEGG_APOPTOSIS87-0.678-2.042< 0.0016.26E-04
KEGG_CHEMOKINE_SIGNALING_PATHWAY188-0.678-2.127< 0.0013.83E-04
KEGG_LEUKOCYTE_TRANSENDOTHELIAL_MIGRATION116-0.677-2.187< 0.0017.69E-04
KEGG_FOCAL_ADHESION199-0.675-2.148< 0.0014.28E-04
KEGG_HYPERTROPHIC_CARDIOMYOPATHY_HCM83-0.673-2.128< 0.0014.30E-04
KEGG_CELL_ADHESION_MOLECULES_CAMS131-0.663-2.076< 0.0017.01E-04
KEGG_REGULATION_OF_ACTIN_CYTOSKELETON213-0.659-2.158< 0.0016.42E-04
KEGG_GAP_JUNCTION90-0.656-2.052< 0.0016.23E-04
KEGG_ENDOCYTOSIS181-0.656-2.084< 0.0018.02E-04
KEGG_MELANOGENESIS101-0.630-2.129< 0.0014.92E-04
KEGG_VASCULAR_SMOOTH_MUSCLE_CONTRACTION114-0.629-2.097< 0.0017.21E-04
KEGG_CYTOKINE_CYTOKINE_RECEPTOR_INTERACTION264-0.625-2.119< 0.0013.44E-04
KEGG_PATHWAYS_IN_CANCER325-0.621-2.111< 0.0014.50E-04
KEGG_MAPK_SIGNALING_PATHWAY267-0.602-2.080< 0.0017.48E-04
KEGG_CALCIUM_SIGNALING_PATHWAY177-0.582-2.057< 0.0016.60E-04
VCAN participates in immunomodulatory function in HCC

The results of three different algorithms showed that immune cell infiltration was significantly different between the high and low VCAN expression groups (Figures 7A-C). The stromal score, immune score, and tumor purity of TCGA-LIHC tumor tissues were significantly different between the two groups (Figures 8A and B). VCAN was significantly correlated to all 47 immune checkpoint genes (Figure 8C). In addition, TMB in the low VCAN group was significantly higher than that in the high VCAN group (Figure 8D). Programmed cell death protein 1 (PD-1) and cytotoxic T lymphocyte antigen 4 (CTLA4) were significantly related to VCAN mRNA expression (Figure 8E). Based on the significant correlation between VCAN and immune checkpoint genes and TMB[24], VCAN is possible to predict sensitivity to immune checkpoint inhibitor (ICI) therapy in HCC.

Figure 7
Figure 7 Immune cell infiltration in low VCAN group and high VCAN group. A: Immune cell infiltration calculated by ssGSEA algorithm; B: Immune cell infiltration calculated by CIBERSORTx algorithm; C: Immune cell infiltration calculated by TIMER algorithm. ns: P > 0.05; aP < 0.05, bP < 0.01, cP < 0.001.
Figure 8
Figure 8 Correlation between VCAN and tumor microenvironment score, tumor mutation burden, or immune checkpoint genes. A: Tumor purity of low VCAN group and high VCAN group; B: Stromal score, immune score, and ESTIMATE score of low VCAN group and high VCAN group; C: Significant VCAN-related immune checkpoint genes (r > 0.3, P < 0.05); D: Tumor mutation burden of low VCAN group and high VCAN group; E: Correlation between VCAN and programmed cell death protein 1/cytotoxic T lymphocyte antigen 4. cP < 0.001. TME: Tumor microenvironment.
DISCUSSION

Our study found no significant difference in VCAN mRNA in serum mononuclear cells between HBV-related patients and controls, but the analysis based on BBCancer database showed that VCAN in HCC patients was significantly higher than that in normal controls (Supplementary Figure 1A). The possible reasons were as follows: The public database detected VCAN expression levels in extracellular vesicles in serum, while we detected VCAN expression levels in peripheral blood mononuclear cells, considering that VCAN is mainly expressed on the cell surface. Exosomes are vesicles secreted by a variety of living cells, which contain a variety of components such as protein and RNA. Tumor-derived or tumor-related exosomes play an important role in the regulation of tumor development, especially through the TME, so the result would have been different if we had collected plasma exosomes from patients to measure VCAN RNA levels[25]. The reason why we made the assumption that VCAN methylation was significantly lower in HCC patients’ blood, which is consistent with the result from TCGA-LIHC, was that VCAN is highly expressed in tumor tissue.

VCAN is highly expressed in tumor tissues, but especially higher in tumor tissues of HCC associated with viruses (Liver Cancer-RIKEN, Japan Project from International Cancer Genome Consortium) compared with HCC secondary to alcohol consumption and adiposity (ICGA-LICA-FR, Supplementary Figures 1B-D). In addition, when there is cirrhosis of the liver, viral hepatitis (including HBV and HCV) is more likely to progress to liver cancer than fatty hepatitis (including alcoholic and nonalcoholic), but when there is no cirrhosis of the liver, the opposite is true[26], which suggests that different causes have different mechanisms of progression from liver cirrhosis to cancer. VCAN expression in serum mononuclear cells is related to the characterization of HBeAg, which has been confirmed to promote the progression of HCC. This also proves that VCAN may promote the occurrence of liver cancer through interaction with HBeAg.

To investigate why VCAN is highly expressed in HCC tumor tissue or how it works, we also predicted VCAN-interacting proteins. The proteins that may interact with VCAN obtained by STRING online (Figure 5A) include three main types: Decorin, biglycan, and other ECM components mainly involved in collagen production, physiological activities such as cell adhesion, apoptosis, and cellular immunity; Toll-like receptor (TLR)1 and TLR2, factors involved in immune response and inflammatory response; and integrin/integrin receptors and various protein kinases, which participate in angiogenesis and cell adhesion. A similar conclusion was drawn by the GO analysis, KEGG analysis, and the GSEA of patients with high VCAN expression (Figures 5C and D, Table 4), which showed that VCAN affects the occurrence of HCC mainly through ECM-related signaling pathways and the immune inflammatory response.

To explore the role of VCAN in immunoregulation of liver cancer, we analyzed the correlation between VCAN expression and tumor immune cell infiltration of TCGA-LIHC (Figures 6A-C), which indicated that VCAN plays a role in T-cell regulation in HCC. PD-1 regulates the immune system and promotes tolerance by inhibiting T-cell inflammatory activity. Clinical trials of nivolumab, pembrolizumab, and atezolizumab (PD-1 inhibitors) have shown they prolong OS of HCC patients and delay tumor progression[27-29], and tremelimumab (CTLA-4 inhibitor) has shown similar results[30]. Several guidelines recommend ICIs in combination with antiangiogenic agents as first-line therapy for advanced HCC[9-11]. The efficacy of ICIs can be predicted by TMB and immune checkpoint gene expression levels[31,32]. In our study, differential expression of PD-1 and CTLA-4 in the high and low VCAN groups, as well as significantly different TMB, showed that VCAN could be a potential biomarker of sensitivity to ICIs in HCC. However, only transcription data of a cohort of HCC patients treated with ICIs could directly explain whether VCAN could be a biomarker for the efficacy of such immunotherapy.

In addition, CD44 deserves attention when studying the role of VCAN in immunoregulation of liver cancer. PPI shows that CD44 is the most likely immune-related protein to interact with VCAN. Both VCAN and CD44 are involved in the adhesion and migration of T cells through the ECM, and both of their intermediate molecules are hyaluronic acid[33]. The immune cells in the TME of HCC interact with effector molecules to alter the immune system and promote or inhibit the growth of HCC[34]. Immunotherapy has been listed as a fourth-line treatment after surgery, radiotherapy, and chemotherapy, and has been promoted as a first-line treatment for advanced unresectable liver cancer. Immune checkpoints block T-cell activation and promote T-cell failure to regulate immune escape in cancer[35]. ICIs have been widely used in melanoma, nonsmall cell lung cancer, etc. Immune and inflammatory responses play a key role in the development and progression of HCC, so ICIs are supposed to be effective in HCC. Several clinical trials of PD-1/CTLA4 inhibitors in HCC are under way, and have proved their efficacy[27-29]. VCAN deserves attention due to its potential prediction of sensitivity to PD-1/CTLA4 inhibitors.

In this study, we found that VCAN was highly expressed in HCC tumor tissues and could possibly be a biomarker of prognosis and sensitivity to ICIs in HCC patients. Our study had the following limitations: Due to the lack of follow-up for HCC patients, survival data were not available for analysis. In addition, we did not extract exosomes from patients’ serum for detection. We will further study the effects of the above defects on VCAN and its related genes in HBV-related liver diseases.

CONCLUSION

We analyzed VCAN expression and corresponding clinical features of patients from the public database and our HBV-related patients, and concluded that VCAN may affect the occurrence of liver cancer and the prognosis of HCC patients through ECM signaling pathways and inflammatory immune response signaling pathways. In addition, VCAN may be a biomarker for sensitivity to ICIs, which needs to be verified.

ARTICLE HIGHLIGHTS
Research background

Existing studies have shown that chondroitin sulfate proteoglycan, including VCAN, is a key component in the tumor microenvironment and may play an important role in hepatocellular carcinoma (HCC).

Research motivation

The role of VCAN in HCC has not yet been elucidated, especially in hepatitis B virus (HBV)-related HCC.

Research objectives

This study aimed to investigate the expression and potential mechanism of action of VCAN in HCC.

Research methods

We tested VCAN expression in serum of patients with HBV-associated HCC and cirrhosis, and explore the underlying mechanism of VCAN in HCC by bioinformatics methods.

Research results

VCAN may be a possible biomarker for the prognosis of HCC. VCAN was associated with HBV e antigen in HBV infected patients. VCAN may play a role in HCC through the extracellular matrix signaling pathway and inflammatory immune response.

Research conclusions

High VCAN level could be a possible biomarker for the poor prognosis of HCC, and its immunomodulatory mechanism in HCC deserves attention.

Research perspectives

Future studies will be conducted to explore the immune mechanism of VCAN in HBV-associated HCC.

Footnotes

Provenance and peer review: Unsolicited article; Externally peer reviewed.

Peer-review model: Single blind

Specialty type: Oncology

Country/Territory of origin: China

Peer-review report’s scientific quality classification

Grade A (Excellent): 0

Grade B (Very good): B

Grade C (Good): C

Grade D (Fair): 0

Grade E (Poor): 0

P-Reviewer: Gupta T, India; Yao YQ, China S-Editor: Wang JJ L-Editor: Wang TQ P-Editor: Cai YX

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