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Correlation analysis of CCAAT/enhancer-binding proteins and their regulated genes with rat liver regeneration
Wang Wang, Xiao-Guang Chen, Cun-Shuang Xu
Wang Wang, Cun-Shuang Xu, Life Science College of He'nan Normal University, Xinxiang 453007, He'nan Province, China
Xiao-Guang Chen, Key Laboratory of Cell Differentiation and Regulation Co-construction from Science and Technology Department of He'nan Province, Xinxiang 453007, He'nan Province, China
Correspondence to: Cun-Shuang Xu, Life Science College of He'nan Normal University, 46 Jianshe East Road, Xinxiang 453007, He'nan Province, China. xucs@ x263.net
Received: April 24, 2007 Revised: May 1, 2007 Accepted: May 10, 2007 Published online: July 18, 2007
AIM: To explore the effects on transcription levels of CCAAT/enhancer-binding proteins (CEBP) genes and genes regulated in liver regeneration (LR).
METHODS: CEBP family transcription factors correlated with LR were input into the websites of NCBI (www.ncbi.nlm.nih.gov) and RGD (rgd.mcw.edu). Documents related to the transcription functions of CEBP family transcription factors were located and the CEBP family downstream target genes in human, rat and mice obtained. The human and mice non-repeated genes in rat genes were screened out; the results were confirmed by comparison by Rat Genome 230 2.0 chip examination. Twice up-regulated and down-regulated genes were regarded as significantly changed rat homologous genes. The Rat Genome 230 2.0 chips were used to detect the expressions of the above genes in rat RL. Genes correlated with liver regeneration were confirmed by comparison in a true and false operation.
RESULTS: Twenty-seven genes correlated with LR, 11 of which were up-regulated, 6 down-regulated, and 10 that were up-regulated at certain time points but down-regulated at others. The up-regulated range was 2 to 128 fold of the comparison group, while the down-regulated range was 2 to 16 fold. The number of genes expressed in the LR initiation [0.5-4 hours after partial hepatectomy (PH)], G0/G1 transition (4-6 hours after PH), cell proliferation (6-66 hours after PH) and cell differentiation and tissue structure reconstruction (72-168 hours after PH) stages were 18, 3, 8 and 1, respectively. Total expression times were 18, 11, 25 and 16, respectively, showing that the correlated genes were primarily expressed in the LR initiation stage. Genes were up-regulated 126 fold and down-regulated 76 fold, indicating that more genes were up-regulated than down-regulated in LR.
CONCLUSION: CEBPs and their regulated genes are highly correlated with cell proliferation, cell differentiation, cell apoptosis, inflammation, stress response, lipids metabolism and changes in the extracellular matrix.
Citation: Wang W, Chen XG, Xu CS. Correlation analysis of CCAAT/enhancer-binding proteins and their regulated genes with rat liver regeneration. Shijie Huaren Xiaohua Zazhi 2007; 15(20): 2186-2193
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