Basic Study
Copyright ©The Author(s) 2019.
World J Gastroenterol. Feb 7, 2019; 25(5): 584-599
Published online Feb 7, 2019. doi: 10.3748/wjg.v25.i5.584
Table 1 PCR primers for chimeric mouse genotyping and corresponding band results
Sequence (5’-3’)Results
Cldn7 loxP-tF primer : GTACGAGTTTGGACCT GCCAFln/Fln = 493 bp; Fln/wt = 493/375 bp; wt/wt = 375 bp
Cldn7-LoxP-tR primer : TGTGCAA GGATCTGGGTCTG
Cldn7-FRT-tF primer : CTGATCTGGGTGTCCCACGTFln/Fln = 507 bp; Fln/wt = 507/0 bp; wt/wt = 0bp
ZMK-2F4 primer: GCATCGCATTGTCTGAG TAGGTG
Neo-5R primer : GGCTGG ACGTAAACTCCTCFln/Fln = 259 bp; Fln/wt = 259/0bp; wt/wt = 0 bp
Cldn7-FRT-tR primer: CGATGAAACC GTTCCAGGTA
Table 2 PCR primers for gene knockout mouse genotyping and corresponding explanations
Primer sequence (5’-3’)ResultsDescription
Cldn7-FRTtF2: CCTGGGATCTGATCTGGGTGwt = 600 bp, fln = none; fl = 756 bp, Null = noneCheck if flper is reorganized
Cldn7-FRTtR2: GGCAGGTAGCCTTAGGATGG
ZMK2F4: GCATCGCATTGTCTGAGTAGGTGwt = none, fln = 515 bp; fl = none, Null = noneCheck if Neo is deleted completely
Cldn7-FRTtF2: CCTGGGATCTGATCTGGGTG
Cldn7-loxPtF2: CTTGGGAGACATCAGGTCCGwt = 512 bp, fln = 630 bp; fl = 630 bp, Null = noneHomozygous identification
Cldn7-loxPtR2: GAGGCAATAGGCCCAAGGAG
Cldn7-FRTtF2: CCTGGGATCTGATCTGGGTGwt = none, fln = none; fl = none, Null = 640 bpCheck if Cre mediated recombination occurs
Cldn7-loxPtR2: GAGGCAATAGGCCCAAGGAG
Cre-up: GCCTGCATTACCGGTCGATGCT: 481 bp; W: noneDetect Cre
Cre-low: CAGGGTGTTATAAGCAATCCC