Abstracts Open Access
Copyright ©The Author(s) 2000. Published by Baishideng Publishing Group Inc. All rights reserved.
World J Gastroenterol. Sep 15, 2000; 6(Suppl3): 15-15
Published online Sep 15, 2000. doi: 10.3748/wjg.v6.iSuppl3.15
Use of bioinformatics to model the structure of the cell surface fucosyl transferasegsd on Mycobacterium avium subspecies paratuberculosis (MAP) and develop specific anti-peptide antibodies for the immunolocalization of these pathogens
Jun Cheng, Joe Sheridan, Nazira Sumar, Tim Bull, Peter Dalton, John Hermon-Taylor, Department of Surgery, St. George’s Hospital Medical School, Cranmer Terrace, London SW17 ORE, United Kingdom
Author contributions: All authors contributed equally to the work.
Correspondence to: Jun Cheng, Department of Surgery, St. George’s Hospital Medical School, Cranmer Terrace, London SW17 ORE, United Kingdom
Received: May 25, 2000
Revised: June 25, 2000
Accepted: July 1, 2000
Published online: September 15, 2000

Abstract

AIM: To model the gsd sequence on the crystal structure of the homologue protein spsA from Bacillus subtilis and identify peptide regions suitable for the generation of specific anti-peptide antibody.

METHODS: Available bioinformatics programs were used to develop a predicted structure for gsd. A 15 residue peptide forming a surface loop in the carboxyterminal domain of gsd was synthesized and used to immunize rabbits. Specific antibody was purified by affinity chromatography on the corresponding synthetic peptide and tested in ELISA for peptide recognition and by immunostaining of in vitro cultured MAP.

RESULTS: A good structural prediction for gsd was obtained showing an aminoterminal GDP-fucose binding domain and a carboxy terminal rhamnose binding domain. The peptide loop TGFSMRQGTDKEFRK in the carbody-terminal domain was synthesized. Affinity purified anti-peptide antibodies showed tight binding to the synthetic peptide in ELISA, and strong immunostaining of MAP which was enhanced by prior treatment of the target organisms with lysosyme. Control M. avium lacking the GS element was not stained.

CONCLUSION: The use of bioinformatics to select appropriate peptide regions on target molecules for the generation of specific antibodies is an effective strategy in the rapid development of reagents for the specific recognition and immunolocalization of MAP.

Key Words: Mycobacterium avium; Paratuberculosis; Glycosyltransferases; Bacillus subtilis; Chromatography, affinity; Antibodies, anti-idiotypic



Footnotes

E- Editor: Hu S

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