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Marzoque HJ, Batista ML, Nääs IDA, de Alencar MDCB. Machine learning models for minimizing aggravation in work-related musculoskeletal disorders among slaughterhouse workers. Work 2025:10519815251329261. [PMID: 40289601 DOI: 10.1177/10519815251329261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/30/2025] Open
Abstract
BackgroundWork-related musculoskeletal disorders (WMSDs) are common in Brazilian slaughterhouses. The repetitive and strenuous nature of meat processing, especially in slaughterhouses, makes employees highly susceptible to developing WMSDs. Prolonged standing, repetitive motions, and forceful actions such as lifting and cutting are common contributing factors.ObjectiveThis study aimed to develop models to predict the risk of aggravating WMSDs in slaughterhouse workers using the data mining concept.MethodsData were retrieved from an open-source governmental database, and descriptive statistics were used to evaluate them. The data set involved organizational aspects, and demographic, physical, and health issues were attributes. A descriptive analysis was applied, and the data mining method was used to process data with the Random Forest algorithm to classify the aggravation of WMSDs'.ResultsThree tree-ensemble predictive models were found (accuracy = 95.3%, κappa = 0.93) and described using the "If-Then" rules. The first tree had as the root attribute the change of function due to a health condition (high blood pressure or diabetes), followed by medical leave, working time, change of working place, and age, and the second had the worker's age as the root attribute, followed by working time, sex, and age. The third tree's root attribute was musculoskeletal pain symptoms, followed by working hours, age, and working time. Workers who do not change their roles and are on medical leave for over 1642.5 days present a high risk of worsening symptoms. Working time over 1980 days leads to a high risk of aggravating WMSDs. Females older than 24.5 years and staying more than 1620 days in the same function also presented a high risk of aggravating the WMSDs.ConclusionsThe machine learning models might help prevent WMSD risk aggravation by sorting the available data set and identifying patterns and relationships.
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Affiliation(s)
- Hercules José Marzoque
- University Paulista, Department Graduate Program in Production Engineering, São Paulo, Brazil
| | - Marcelo Linon Batista
- Federal Institute of Bahia-campus Jacobina, Department of Health and Safety at Work, Bahia, Brazil
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Tuomi L, Parris TZ, Rawshani A, Andersson E, Orozco A, Finizia C. Genetic, clinical, lifestyle and sociodemographic risk factors for head and neck cancer: A UK Biobank study. PLoS One 2025; 20:e0318889. [PMID: 40184367 PMCID: PMC11970685 DOI: 10.1371/journal.pone.0318889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2024] [Accepted: 01/23/2025] [Indexed: 04/06/2025] Open
Abstract
INTRODUCTION Despite a steady decline in tobacco smoking, head and neck cancer (HNC) incidence rates are on the rise. Therefore, novel risk factors for HNC are needed to identify at-risk patients at an early stage. Here, we used genetic, clinical, lifestyle, and sociodemographic data from UK Biobank (UKB) to evaluate the relative importance of known risk factors for HNC and identify novel predictors of HNC risk. METHODS All participants in the UKB between 2006 and 2021 were stratified into HNC cases and controls at baseline (cases: n = 534; controls: n = 501833) or during follow-up (cases: n = 1587; controls: n = 500246). A cross-sectional description of risk factors (clinical characteristics, lifestyle and sociodemographic) for HNC at baseline was performed, followed by multivariate Cox regression analysis (adjusted for age and sex) and gradient boosting machine learning to determine the relative importance of predictors (phenotypic predictors and SNPs) of HNC development after baseline. RESULTS In addition to known risk factors for HNC (age, male sex, smoking and alcohol consumption habits, occupation), we show that smoking cessation at ≤ 40 years of age is the strongest predictor of HNC risk. Although SNPs may play a role in HNC development, a predictive model containing phenotypic variables and SNPs (C-index 0.75) did not significantly outperform a model containing the phenotypic predictors alone (C-index 0.73). CONCLUSION Taken together, this study demonstrates that phenotypic variables such as past tobacco smoking habits, occupation, facial pain, education, pulmonary function, and anthropometric measures can be used to predict HNC risk.
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Affiliation(s)
- Lisa Tuomi
- Department of Health and Rehabilitation, Institute of Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
- Department of Otorhinolaryngology—Head and Neck Surgery, Region Västra Götaland, Sahlgrenska University Hospital, Gothenburg, Sweden
| | - Toshima Z. Parris
- Department of Oncology, Institute of Clinical Sciences, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
- Sahlgrenska Center for Cancer Research, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
| | - Araz Rawshani
- Department of Otorhinolaryngology—Head and Neck Surgery, Region Västra Götaland, Sahlgrenska University Hospital, Gothenburg, Sweden
- Department of Molecular and Clinical Medicine, Institute of Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
- Wallenberg Laboratory for Cardiovascular and Metabolic Research, Institute of Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
| | - Erik Andersson
- Department of Molecular and Clinical Medicine, Institute of Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
- Wallenberg Laboratory for Cardiovascular and Metabolic Research, Institute of Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
| | - Alina Orozco
- Bioinformatics and Data Centre at the Sahlgrenska Academy and Clinical Genomics Gothenburg at SciLifeLab, Gothenburg, Sweden
| | - Caterina Finizia
- Department of Otorhinolaryngology—Head and Neck Surgery, Region Västra Götaland, Sahlgrenska University Hospital, Gothenburg, Sweden
- Department of Otorhinolaryngology—Head and Neck Surgery, Institute of Clinical Sciences, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
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Rafiepoor H, Ghorbankhanloo A, Zendehdel K, Madar ZZ, Hajivalizadeh S, Hasani Z, Sarmadi A, Amanpour‐Gharaei B, Barati MA, Saadat M, Sadegh‐Zadeh S, Amanpour S. Comparison of Machine Learning Models for Classification of Breast Cancer Risk Based on Clinical Data. Cancer Rep (Hoboken) 2025; 8:e70175. [PMID: 40176498 PMCID: PMC11965882 DOI: 10.1002/cnr2.70175] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Revised: 02/01/2025] [Accepted: 02/20/2025] [Indexed: 04/04/2025] Open
Abstract
BACKGROUND Breast cancer (BC) is a major global health concern with rising incidence and mortality rates in many developing countries. Effective BC risk assessment models are crucial for prevention and early detection. While the Gail model, a traditional logistic regression-based model, has been broadly used, its predictive performance may be limited by its linear assumptions. With the rapid advancement of artificial intelligence (AI) in medical sciences, various complex machine learning algorithms have been developed for risk prediction, including for BC. AIMS This study aims to compare the quality of AI-based models with the traditional Gail model in assessing BC risk using a population dataset. It also evaluates the performance of these models in predicting BC risk. METHODS AND RESULTS This study involved 942 newly diagnosed BC patients and 975 healthy controls at the Cancer Institute in IKH hospital Complex, Tehran. Ten classification algorithms were applied to the dataset. The accuracy, sensitivity, precision, and feature importance in the machine learning algorithms were assessed and compared to previous studies for evaluation. The study found that AI algorithms alone did not significantly improve predictability compared to the Gail model. However, the importance of variables varied significantly among the AI algorithms. Understanding feature importance and interactions is crucial in AI modeling in order to enhance accuracy and identify critical risk factors. CONCLUSION This study concluded that, in BC risk prediction, incorporating specific risk factors, such as genetic and image-related variables, may be necessary to further enhance accuracy in BC risk prediction models. Furthermore, it is crucial to address modeling issues in models with a restricted number of features for future research.
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Affiliation(s)
- Haniyeh Rafiepoor
- Cancer Biology Research CenterCancer Institute, Tehran University of Medical SciencesTehranIran
| | - Alireza Ghorbankhanloo
- Cancer Biology Research CenterCancer Institute, Tehran University of Medical SciencesTehranIran
| | - Kazem Zendehdel
- Cancer Biology Research CenterCancer Institute, Tehran University of Medical SciencesTehranIran
| | - Zahra Zangeneh Madar
- School of Industrial Engineering, Iran University of Science and TechnologyTehranIran
- Department of Industrial EngineeringIran University of Science and TechnologyTehranIran
| | - Sepideh Hajivalizadeh
- Osteoporosis Research Center, Endocrinology and Metabolism Research InstituteTehran University of Medical SciencesTehranIran
| | - Zeinab Hasani
- School of Medicine, Tehran University of Medical ScienceTehranIran
| | - Ali Sarmadi
- Faculty of Mechanical Engineering, K. N. Toosi University of TechnologyTehranIran
| | - Behzad Amanpour‐Gharaei
- Cancer Biology Research CenterCancer Institute, Tehran University of Medical SciencesTehranIran
| | | | - Mozafar Saadat
- Department of Mechanical EngineeringSchool of Engineering, University of BirminghamBirminghamUK
| | - Seyed‐Ali Sadegh‐Zadeh
- Department of ComputingSchool of Digital, Technologies and Arts, Staffordshire UniversityStoke‐on‐TrentUK
| | - Saeid Amanpour
- Cancer Biology Research CenterCancer Institute, Tehran University of Medical SciencesTehranIran
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Padariya AD, Savaliya NK, Parekh HM, Bhatt BS, Bhatt VD, Patel MN. Synthesis, characterization, and biological activities of novel organometallic compounds of rhenium(I) with 2-(2-benzylidenehydrazinyl) benzothiazole Schiff-base derivatives: Molecular docking, ADME, and DFT studies. Comput Biol Chem 2025; 115:108313. [PMID: 39705780 DOI: 10.1016/j.compbiolchem.2024.108313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2024] [Revised: 11/30/2024] [Accepted: 12/07/2024] [Indexed: 12/23/2024]
Abstract
A series of substituted 2-(2-benzylidenehydrazinyl)benzothiazole Schiff-base derivatives and complexes containing Re(I) were synthesized and analyzed using various characterization techniques, including elemental analysis, conductance measurement, 1H-NMR, FT-IR, and LC-MS. The biological activities of the compounds were evaluated. Binding affinity between the complexes and calf thymus DNA (CT-DNA) was conducted using UV-visible spectroscopy, viscosity measurement, fluorescence spectroscopy, and molecular docking studies, indicating intercalation binding mode. The broth dilution method evaluated antibacterial activity against two Gram-positive and three Gram-negative bacteria. The results demonstrated the effectiveness of each complex against the tested pathogens. The MTT assay examined cytotoxic qualities on MCF-7 cell lines, demonstrating strong cytotoxic effects. The lethality of brine prawn assay was employed to assess the toxicity of the compounds. The Schiff base was optimized using the 6-31 G (d, p) basis set and B3LYP techniques. Density functional theory calculations were performed to compare the bond angles and lengths of the synthesized compounds with experimental values, showing good agreement, and to calculate the related orbital energies. The therapeutic qualities were evaluated using an in silico ADMET model, which verified that the synthesized compounds have qualities similar to those of drugs.
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Affiliation(s)
- Aelvish D Padariya
- Department of Chemistry, Sardar Patel University, Vallabh Vidyanagar, Gujarat 388 120, India
| | - Nirbhay K Savaliya
- Department of Chemistry, Sardar Patel University, Vallabh Vidyanagar, Gujarat 388 120, India
| | - Hitesh M Parekh
- Department of Chemistry, Sardar Patel University, Vallabh Vidyanagar, Gujarat 388 120, India
| | - Bhupesh S Bhatt
- Department of Chemistry, Sardar Patel University, Vallabh Vidyanagar, Gujarat 388 120, India.
| | - Vaibhav D Bhatt
- School of Applied Sciences and Technology, Gujarat Technological University, Ahmedabad, India
| | - Mohan N Patel
- Department of Chemistry, Sardar Patel University, Vallabh Vidyanagar, Gujarat 388 120, India.
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Thekdi S, Tatar U, Santos J, Chatterjee S. On the compatibility of established methods with emerging artificial intelligence and machine learning methods for disaster risk analysis. RISK ANALYSIS : AN OFFICIAL PUBLICATION OF THE SOCIETY FOR RISK ANALYSIS 2025; 45:863-877. [PMID: 39301866 PMCID: PMC12032385 DOI: 10.1111/risa.17640] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 08/02/2024] [Accepted: 08/05/2024] [Indexed: 09/22/2024]
Abstract
There is growing interest in leveraging advanced analytics, including artificial intelligence (AI) and machine learning (ML), for disaster risk analysis (RA) applications. These emerging methods offer unprecedented abilities to assess risk in settings where threats can emerge and transform quickly by relying on "learning" through datasets. There is a need to understand these emerging methods in comparison to the more established set of risk assessment methods commonly used in practice. These existing methods are generally accepted by the risk community and are grounded in use across various risk application areas. The next frontier in RA with emerging methods is to develop insights for evaluating the compatibility of those risk methods with more recent advancements in AI/ML, particularly with consideration of usefulness, trust, explainability, and other factors. This article leverages inputs from RA and AI experts to investigate the compatibility of various risk assessment methods, including both established methods and an example of a commonly used AI-based method for disaster RA applications. This article utilizes empirical evidence from expert perspectives to support key insights on those methods and the compatibility of those methods. This article will be of interest to researchers and practitioners in risk-analytics disciplines who leverage AI/ML methods.
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Affiliation(s)
- Shital Thekdi
- Robins School of BusinessUniversity of RichmondRichmondVirginiaUSA
| | - Unal Tatar
- Cybersecurity DepartmentUniversity at Albany State University of New YorkAlbanyNew YorkUSA
| | - Joost Santos
- Engineering Management and Systems Engineering DepartmentThe George Washington UniversityWashingtonDistrict of ColumbiaUSA
| | - Samrat Chatterjee
- Data Sciences and Machine Intelligence GroupPacific Northwest National LaboratoryRichlandWashingtonUSA
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Li Q, Liu H. Investigating the Prognostic Role of Telomerase-Related Cellular Senescence Gene Signatures in Breast Cancer Using Machine Learning. Biomedicines 2025; 13:826. [PMID: 40299459 PMCID: PMC12024799 DOI: 10.3390/biomedicines13040826] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2025] [Revised: 03/24/2025] [Accepted: 03/29/2025] [Indexed: 04/30/2025] Open
Abstract
Background: Telomeres and cellular senescence are critical biological processes implicated in cancer development and progression, including breast cancer, through their influence on genomic stability and modulation of the tumor microenvironment. Methods: This study integrated bulk RNA sequencing and single-cell RNA sequencing (scRNA-seq) data to establish a gene signature associated with telomere maintenance and cellular senescence for prognostic prediction in breast cancer. Telomere-related genes (TEGs) and senescence-associated genes were curated from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. A comprehensive machine learning framework incorporating 101 algorithmic combinations across 10 survival modeling approaches, including random survival forests and ridge regression, was employed to develop a robust prognostic model. Results: A set of 19 key telomere- and senescence-related genes was identified as the optimal prognostic signature. The model demonstrated strong predictive accuracy and was successfully validated in multiple independent cohorts. Functional enrichment analyses indicated significant associations with immune responses and aging-related pathways. Single-cell transcriptomic analysis revealed marked cellular heterogeneity, identifying distinct subpopulations (fibroblasts and immune cells) with divergent risk scores and biological pathway activity. Additionally, pseudo-time trajectory analysis and intercellular communication mapping provided insights into the dynamic evolution of the tumor microenvironment. Immunohistochemical (IHC) validation using data from the Human Protein Atlas confirmed differential protein expression between normal and tumor tissues for several of the selected genes, reinforcing their biological relevance and clinical utility. Conclusions: This study presents a novel 19-gene telomere- and senescence-associated signature with strong prognostic value in breast cancer. These findings enhance our understanding of tumor heterogeneity and may inform precision oncology approaches and future therapeutic strategies.
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Affiliation(s)
| | - Hongde Liu
- State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University, Nanjing 211189, China;
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Yang X, Li J, Sun H, Chen J, Xie J, Peng Y, Shang T, Pan T. Radiomics Integration of Mammography and DCE-MRI for Predicting Molecular Subtypes in Breast Cancer Patients. BREAST CANCER (DOVE MEDICAL PRESS) 2025; 17:187-200. [PMID: 39990966 PMCID: PMC11846489 DOI: 10.2147/bctt.s488200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/23/2024] [Accepted: 01/21/2025] [Indexed: 02/25/2025]
Abstract
Background Accurate identification of the molecular subtypes of breast cancer is essential for effective treatment selection and prognosis prediction. Aim This study aimed to evaluate the diagnostic performance of a radiomics model, which integrates breast mammography and dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) in predicting the molecular subtypes of breast cancer. Methods We retrospectively included 462 female patients with pathologically confirmed breast cancer, including 53 cases of triple-negative, 94 cases of HER2 overexpression, 95 cases of luminal A, and 215 cases of luminal B breast cancer. Radiomics analysis was performed using FAE software, wherein the radiomic features were examined about the hormone receptor status. The performance of the model was evaluated using the area under the receiver operating characteristic curve (AUC) and accuracy. Results In multivariate analysis, radiomic features were the only independent predictive factors for molecular subtypes. The model that incorporates multimodal fusion features from breast mammography and DCE-MRI images exhibited superior overall performance compared to using either modality independently. The AUC values (or accuracies) for six pairings were as follows: 0.648 (0.627) for luminal A vs luminal B, 0.819 (0.793) for luminal A vs HER2 overexpression, 0.725 (0.696) for luminal A vs triple-negative subtype, 0.644 (0.560) for luminal B vs HER2 overexpression, 0.625 (0.636) for luminal B vs triple-negative subtype, and 0.598 (0.500) for triple-negative subtype vs HER2 overexpression. Conclusion The radionics model utilizing multimodal fusion features from breast mammography combined with DCE-MRI images showed high performance in distinguishing molecular subtypes of breast cancer. It is of significance to accurately predict prognosis and determine treatment strategy of breast cancer by molecular classification.
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Affiliation(s)
- Xianwei Yang
- Department of Radiology, Affiliated Hospital of Guizhou Medical University, Guiyang, 550004, People’s Republic of China
| | - Jing Li
- Department of Radiology, Affiliated Hospital of Guizhou Medical University, Guiyang, 550004, People’s Republic of China
| | - Hang Sun
- School of Information Science and Engineering, Shenyang Ligong University, Shenyang, 110159, People’s Republic of China
| | - Jing Chen
- Department of Radiology, Affiliated Hospital of Guizhou Medical University, Guiyang, 550004, People’s Republic of China
| | - Jin Xie
- Department of Radiology, Affiliated Hospital of Guizhou Medical University, Guiyang, 550004, People’s Republic of China
| | - Yonghui Peng
- Department of Radiology, Affiliated Hospital of Guizhou Medical University, Guiyang, 550004, People’s Republic of China
| | - Tao Shang
- Department of Radiology, Affiliated Hospital of Guizhou Medical University, Guiyang, 550004, People’s Republic of China
| | - Tongyong Pan
- Department of Radiology, Affiliated Hospital of Guizhou Medical University, Guiyang, 550004, People’s Republic of China
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Taghipour-Gorjikolaie M, Ghavami N, Papini L, Badia M, Fracassini A, Bigotti A, Palomba G, Álvarez Sánchez-Bayuela D, Romero Castellano C, Loretoni R, Calabrese M, Tagliafico AS, Ghavami M, Tiberi G. AI-based hierarchical approach for optimizing breast cancer detection using MammoWave device. Biomed Signal Process Control 2025; 100:107143. [DOI: 10.1016/j.bspc.2024.107143] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/24/2025]
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Lepoittevin M, Remaury QB, Lévêque N, Thille AW, Brunet T, Salaun K, Catroux M, Pellerin L, Hauet T, Thuillier R. Advantages of Metabolomics-Based Multivariate Machine Learning to Predict Disease Severity: Example of COVID. Int J Mol Sci 2024; 25:12199. [PMID: 39596265 PMCID: PMC11594300 DOI: 10.3390/ijms252212199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2024] [Revised: 11/07/2024] [Accepted: 11/08/2024] [Indexed: 11/28/2024] Open
Abstract
The COVID-19 outbreak caused saturations of hospitals, highlighting the importance of early patient triage to optimize resource prioritization. Herein, our objective was to test if high definition metabolomics, combined with ML, can improve prognostication and triage performance over standard clinical parameters using COVID infection as an example. Using high resolution mass spectrometry, we obtained metabolomics profiles of patients and combined them with clinical parameters to design machine learning (ML) algorithms predicting severity (herein determined as the need for mechanical ventilation during patient care). A total of 64 PCR-positive COVID patients at the Poitiers CHU were recruited. Clinical and metabolomics investigations were conducted 8 days after the onset of symptoms. We show that standard clinical parameters could predict severity with good performance (AUC of the ROC curve: 0.85), using SpO2, first respiratory rate, Horowitz quotient and age as the most important variables. However, the performance of the prediction was substantially improved by the use of metabolomics (AUC = 0.92). Our small-scale study demonstrates that metabolomics can improve the performance of diagnosis and prognosis algorithms, and thus be a key player in the future discovery of new biological signals. This technique is easily deployable in the clinic, and combined with machine learning, it can help design the mathematical models needed to advance towards personalized medicine.
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Affiliation(s)
- Maryne Lepoittevin
- Inserm Unit Ischémie Reperfusion, Métabolisme et Inflammation Stérile en Transplantation (IRMETIST), UMR U1313, F-86073 Poitiers, France; (M.L.); (L.P.); (T.H.)
- Faculty of Medicine and Pharmacy, University of Poitiers, F-86073 Poitiers, France
| | - Quentin Blancart Remaury
- UMR CNRS 7285, Institut de Chimie des Milieux et Matériaux de Poitiers (IC2MP), University of Poitiers, 4 rue Michel-Brunet, TSA 51106, F-86073 Poitiers cedex 9, France;
| | - Nicolas Lévêque
- LITEC, CHU de Poitiers, Laboratoire de Virologie et Mycobactériologie, Université de Poitiers, 2 r Milétrie, F-86000 Poitiers, France;
| | - Arnaud W. Thille
- Intensive Care Medicine Department, CHU Poitiers, F-86021 Poitiers, France; (A.W.T.); (K.S.)
| | - Thomas Brunet
- Geriatric Medicine Department, CHU Poitiers, F-86021 Poitiers, France;
| | - Karine Salaun
- Intensive Care Medicine Department, CHU Poitiers, F-86021 Poitiers, France; (A.W.T.); (K.S.)
| | - Mélanie Catroux
- Internal Medicine and Infectious Disease Department, CHU Poitiers, F-86021 Poitiers, France;
| | - Luc Pellerin
- Inserm Unit Ischémie Reperfusion, Métabolisme et Inflammation Stérile en Transplantation (IRMETIST), UMR U1313, F-86073 Poitiers, France; (M.L.); (L.P.); (T.H.)
- Faculty of Medicine and Pharmacy, University of Poitiers, F-86073 Poitiers, France
- Biochemistry Department, CHU Poitiers, F-86021 Poitiers, France
| | - Thierry Hauet
- Inserm Unit Ischémie Reperfusion, Métabolisme et Inflammation Stérile en Transplantation (IRMETIST), UMR U1313, F-86073 Poitiers, France; (M.L.); (L.P.); (T.H.)
- Faculty of Medicine and Pharmacy, University of Poitiers, F-86073 Poitiers, France
- Biochemistry Department, CHU Poitiers, F-86021 Poitiers, France
| | - Raphael Thuillier
- Inserm Unit Ischémie Reperfusion, Métabolisme et Inflammation Stérile en Transplantation (IRMETIST), UMR U1313, F-86073 Poitiers, France; (M.L.); (L.P.); (T.H.)
- Faculty of Medicine and Pharmacy, University of Poitiers, F-86073 Poitiers, France
- Biochemistry Department, CHU Poitiers, F-86021 Poitiers, France
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Perumal A, Nithiyanantham J, Nagaraj J. An improved AlexNet deep learning method for limb tumor cancer prediction and detection. Biomed Phys Eng Express 2024; 11:015004. [PMID: 39437809 DOI: 10.1088/2057-1976/ad89c7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Accepted: 10/22/2024] [Indexed: 10/25/2024]
Abstract
Synovial sarcoma (SS) is a rare cancer that forms in soft tissues around joints, and early detection is crucial for improving patient survival rates. This study introduces a convolutional neural network (CNN) using an improved AlexNet deep learning classifier to improve SS diagnosis from digital pathological images. Key preprocessing steps, such as dataset augmentation and noise reduction techniques, such as adaptive median filtering (AMF) and histogram equalization were employed to improve image quality. Feature extraction was conducted using the Gray-Level Co-occurrence Matrix (GLCM) and Improved Linear Discriminant Analysis (ILDA), while image segmentation targeted spindle-shaped cells using repetitive phase-level set segmentation (RPLSS). The improved AlexNet architecture features additional convolutional layers and resized input images, leading to superior performance. The model demonstrated significant improvements in accuracy, sensitivity, specificity, and AUC, outperforming existing methods by 3%, 1.70%, 6.08%, and 8.86%, respectively, in predicting SS.
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Affiliation(s)
- Arunachalam Perumal
- Department of Biomedical Engineering, Vel Tech Rangarajan Dr Sagunthala R&D Institute of Science and Technology, Chennai, 600062, India
| | - Janakiraman Nithiyanantham
- Department of Electronics and Communication Engineering, K.L.N. College of Engineering, Pottapalayam, 630612, India
| | - Jamuna Nagaraj
- Department of General Surgery, Velammal Medical College Hospital and Research Institute, Madurai, 625009, India
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Moawed SA, Mahrous E, Elaswad A, Gouda HF, Fathy A. Milk yield prediction in Friesian cows using linear and flexible discriminant analysis under assumptions violations. BMC Vet Res 2024; 20:392. [PMID: 39237971 PMCID: PMC11378405 DOI: 10.1186/s12917-024-04234-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Accepted: 08/13/2024] [Indexed: 09/07/2024] Open
Abstract
BACKGROUND The application of novel technologies is now widely used to assist in making optimal decisions. This study aimed to evaluate the performance of linear discriminant analysis (LDA) and flexible discriminant analysis (FDA) in classifying and predicting Friesian cattle's milk production into low ([Formula: see text]4500 kg), medium (4500-7500 kg), and high ([Formula: see text]7500 kg) categories. A total of 3793 lactation records from cows calved between 2009 and 2020 were collected to examine some predictors such as age at first calving (AFC), lactation order (LO), days open (DO), days in milk (DIM), dry period (DP), calving season (CFS), 305-day milk yield (305-MY), calving interval (CI), and total breeding per conception (TBRD). RESULTS The comparison between LDA and FDA models was based on the significance of coefficients, total accuracy, sensitivity, precision, and F1-score. The LDA results revealed that DIM and 305-MY were the significant (P < 0.001) contributors for data classification, while the FDA was a lactation order. Classification accuracy results showed that the FDA model performed better than the LDA model in expressing accuracies of correctly classified cases as well as overall classification accuracy of milk yield. The FDA model outperformed LDA in both accuracy and F1-score. It achieved an accuracy of 82% compared to LDA's 71%. Similarly, the F1-score improved from a range of 0.667 to 0.79 for LDA to a higher range of 0.81 to 0.83 for FDA. CONCLUSION The findings of this study demonstrated that FDA was more resistant than LDA in case of assumption violations. Furthermore, the current study showed the feasibility and efficacy of LDA and FDA in interpreting and predicting livestock datasets.
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Affiliation(s)
- Sherif A Moawed
- Department of Animal Wealth Development, Biostatistics Division, Faculty of Veterinary Medicine, Suez Canal University, Ismailia, 41522, Egypt
| | - Esraa Mahrous
- Department of Animal Wealth Development, Biostatistics Division, Faculty of Veterinary Medicine, Suez Canal University, Ismailia, 41522, Egypt.
| | - Ahmed Elaswad
- Center of Excellence in Marine Biotechnology, Sultan Qaboos University, Muscat 123, Oman
| | - Hagar F Gouda
- Animal Wealth Development Department (Biostatistics Subdivision), Faculty of Veterinary Medicine, Zagazig University, Sharkia, 44511, Egypt
| | - Ahmed Fathy
- Department of Animal Wealth Development, Biostatistics Division, Faculty of Veterinary Medicine, Suez Canal University, Ismailia, 41522, Egypt
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12
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Darbandi MR, Darbandi M, Darbandi S, Bado I, Hadizadeh M, Khorram Khorshid HR. Artificial intelligence breakthroughs in pioneering early diagnosis and precision treatment of breast cancer: A multimethod study. Eur J Cancer 2024; 209:114227. [PMID: 39053289 DOI: 10.1016/j.ejca.2024.114227] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2024] [Accepted: 07/07/2024] [Indexed: 07/27/2024]
Abstract
This article delves into the potential of artificial intelligence (AI) to enhance early breast cancer (BC) detection for improved treatment outcomes and patient care. Utilizing a multimethod approach comprising literature review and experiments, the study systematically reviewed 310 articles utilizing 30 diverse datasets. Among the techniques assessed, recurrent neural network (RNN) emerged as the most accurate, achieving 98.58 % accuracy, followed by genetic principles (GP), transfer learning (TL), and artificial neural networks (ANNs), with accuracies exceeding 96 %. While conventional machine learning (ML) methods demonstrated accuracies above 90 %, DL techniques outperformed them. Evaluation of BC diagnostic models using the Wisconsin breast cancer dataset (WBCD) highlighted logistic regression (LR) and support vector machine (SVM) as the most accurate predictors, with minimal errors for clinical data. Conversely, decision trees (DT) exhibited higher error rates due to overfitting, emphasizing the importance of algorithm selection for complex datasets. Analysis of ultrasound images underscored the significance of preprocessing, while histopathological image analysis using convolutional neural networks (CNNs) demonstrated robust classification capabilities. These findings underscore the transformative potential of ML and DL in BC diagnosis, offering automated, accurate, and accessible diagnostic tools. Collaboration among stakeholders is crucial for further advancements in BC detection methods.
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Affiliation(s)
| | - Mahsa Darbandi
- Fetal Health Research Center, Hope Generation Foundation, Tehran, Iran.
| | - Sara Darbandi
- Gene Therapy and Regenerative Medicine Research Center, Hope Generation Foundation, Tehran, Iran.
| | - Igor Bado
- Department of Oncological Sciences, Tisch Cancer Institute, New York, USA.
| | - Mohammad Hadizadeh
- Cancer Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
| | - Hamid Reza Khorram Khorshid
- Genetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, Iran; Personalized Medicine and Genometabolics Research Center, Hope Generation Foundation, Tehran, Iran.
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13
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Tabaie A, Tran A, Calabria T, Bennett SS, Milicia A, Weintraub W, Gallagher WJ, Yosaitis J, Schubel LC, Hill MA, Smith KM, Miller K. Evaluation of a Natural Language Processing Approach to Identify Diagnostic Errors and Analysis of Safety Learning System Case Review Data: Retrospective Cohort Study. J Med Internet Res 2024; 26:e50935. [PMID: 39186764 PMCID: PMC11384169 DOI: 10.2196/50935] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Revised: 03/21/2024] [Accepted: 06/20/2024] [Indexed: 08/28/2024] Open
Abstract
BACKGROUND Diagnostic errors are an underappreciated cause of preventable mortality in hospitals and pose a risk for severe patient harm and increase hospital length of stay. OBJECTIVE This study aims to explore the potential of machine learning and natural language processing techniques in improving diagnostic safety surveillance. We conducted a rigorous evaluation of the feasibility and potential to use electronic health records clinical notes and existing case review data. METHODS Safety Learning System case review data from 1 large health system composed of 10 hospitals in the mid-Atlantic region of the United States from February 2016 to September 2021 were analyzed. The case review outcome included opportunities for improvement including diagnostic opportunities for improvement. To supplement case review data, electronic health record clinical notes were extracted and analyzed. A simple logistic regression model along with 3 forms of logistic regression models (ie, Least Absolute Shrinkage and Selection Operator, Ridge, and Elastic Net) with regularization functions was trained on this data to compare classification performances in classifying patients who experienced diagnostic errors during hospitalization. Further, statistical tests were conducted to find significant differences between female and male patients who experienced diagnostic errors. RESULTS In total, 126 (7.4%) patients (of 1704) had been identified by case reviewers as having experienced at least 1 diagnostic error. Patients who had experienced diagnostic error were grouped by sex: 59 (7.1%) of the 830 women and 67 (7.7%) of the 874 men. Among the patients who experienced a diagnostic error, female patients were older (median 72, IQR 66-80 vs median 67, IQR 57-76; P=.02), had higher rates of being admitted through general or internal medicine (69.5% vs 47.8%; P=.01), lower rates of cardiovascular-related admitted diagnosis (11.9% vs 28.4%; P=.02), and lower rates of being admitted through neurology department (2.3% vs 13.4%; P=.04). The Ridge model achieved the highest area under the receiver operating characteristic curve (0.885), specificity (0.797), positive predictive value (PPV; 0.24), and F1-score (0.369) in classifying patients who were at higher risk of diagnostic errors among hospitalized patients. CONCLUSIONS Our findings demonstrate that natural language processing can be a potential solution to more effectively identifying and selecting potential diagnostic error cases for review and therefore reducing the case review burden.
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Affiliation(s)
- Azade Tabaie
- Center for Biostatistics, Informatics, and Data Science, MedStar Health Research Institute, Washington, DC, United States
- Department of Emergency Medicine, Georgetown University School of Medicine, Washington, DC, United States
| | - Alberta Tran
- Department of Quality and Safety, MedStar Health Research Institute, Washington, DC, United States
| | - Tony Calabria
- Department of Quality and Safety, MedStar Health Research Institute, Washington, DC, United States
| | - Sonita S Bennett
- Center for Biostatistics, Informatics, and Data Science, MedStar Health Research Institute, Washington, DC, United States
| | - Arianna Milicia
- National Center for Human Factors in Healthcare, MedStar Health Research Institute, Washington, DC, United States
| | - William Weintraub
- Population Health, MedStar Health Research Institute, Washington, DC, United States
- Georgetown University School of Medicine, Washington, DC, United States
| | - William James Gallagher
- Georgetown University School of Medicine, Washington, DC, United States
- Family Medicine Residency Program, MedStar Health Georgetown-Washington Hospital Center, Washington, DC, United States
| | - John Yosaitis
- Georgetown University School of Medicine, Washington, DC, United States
- MedStar Simulation Training & Education Lab (SiTEL), MedStar Institute for Innovation, Washington, DC, United States
| | - Laura C Schubel
- National Center for Human Factors in Healthcare, MedStar Health Research Institute, Washington, DC, United States
| | - Mary A Hill
- Institute of Health Policy, Management & Evaluation, University of Toronto, Toronto, ON, Canada
- Michael Garron Hospital, Toronto, ON, Canada
| | - Kelly Michelle Smith
- Institute of Health Policy, Management & Evaluation, University of Toronto, Toronto, ON, Canada
- Michael Garron Hospital, Toronto, ON, Canada
| | - Kristen Miller
- National Center for Human Factors in Healthcare, MedStar Health Research Institute, Washington, DC, United States
- Georgetown University School of Medicine, Washington, DC, United States
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14
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El Hachimy I, Kabelma D, Echcharef C, Hassani M, Benamar N, Hajji N. A comprehensive survey on the use of deep learning techniques in glioblastoma. Artif Intell Med 2024; 154:102902. [PMID: 38852314 DOI: 10.1016/j.artmed.2024.102902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Revised: 04/28/2024] [Accepted: 06/02/2024] [Indexed: 06/11/2024]
Abstract
Glioblastoma, characterized as a grade 4 astrocytoma, stands out as the most aggressive brain tumor, often leading to dire outcomes. The challenge of treating glioblastoma is exacerbated by the convergence of genetic mutations and disruptions in gene expression, driven by alterations in epigenetic mechanisms. The integration of artificial intelligence, inclusive of machine learning algorithms, has emerged as an indispensable asset in medical analyses. AI is becoming a necessary tool in medicine and beyond. Current research on Glioblastoma predominantly revolves around non-omics data modalities, prominently including magnetic resonance imaging, computed tomography, and positron emission tomography. Nonetheless, the assimilation of omic data-encompassing gene expression through transcriptomics and epigenomics-offers pivotal insights into patients' conditions. These insights, reciprocally, hold significant value in refining diagnoses, guiding decision- making processes, and devising efficacious treatment strategies. This survey's core objective encompasses a comprehensive exploration of noteworthy applications of machine learning methodologies in the domain of glioblastoma, alongside closely associated research pursuits. The study accentuates the deployment of artificial intelligence techniques for both non-omics and omics data, encompassing a range of tasks. Furthermore, the survey underscores the intricate challenges posed by the inherent heterogeneity of Glioblastoma, delving into strategies aimed at addressing its multifaceted nature.
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Affiliation(s)
| | | | | | - Mohamed Hassani
- Cancer Division, Faculty of medicine, Department of Biomolecular Medicine, Imperial College, London, United Kingdom
| | - Nabil Benamar
- Moulay Ismail University of Meknes, Meknes, Morocco; Al Akhawayn University in Ifrane, Ifrane, Morocco.
| | - Nabil Hajji
- Cancer Division, Faculty of medicine, Department of Biomolecular Medicine, Imperial College, London, United Kingdom; Department of Medical Biochemistry, Molecular Biology and Immunology, School of Medicine, Virgen Macarena University Hospital, University of Seville, Seville, Spain
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15
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Chakraborty M. Rule extraction from convolutional neural networks for heart disease prediction. Biomed Eng Lett 2024; 14:649-661. [PMID: 38946810 PMCID: PMC11208388 DOI: 10.1007/s13534-024-00358-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2023] [Revised: 01/21/2024] [Accepted: 01/30/2024] [Indexed: 07/02/2024] Open
Abstract
The accurate prediction of heart disease is crucial in the field of medicine. While convolutional neural networks have shown remarkable precision in heart disease prediction, they are often perceived as opaque models due to their complex internal workings. This paper introduces a novel method, named Extraction of Classification Rules from Convolutional Neural Network (ECRCNN), aimed at extracting rules from convolutional neural networks to enhance interpretability in heart disease prediction. The ECRCNN algorithm analyses updated kernels to derive understandable rules from convolutional neural networks, providing valuable insights into the contributing factors of heart disease. The algorithm's performance is assessed using the Statlog (Heart) dataset from the University of California, Irvine's repository. Experimental results underscore the effectiveness of the ECRCNN algorithm in predicting heart disease and extracting meaningful rules. The extracted rules can assist healthcare professionals in making precise diagnoses and formulating targeted treatment plans. In summary, the proposed method bridges the gap between the high accuracy of convolutional neural networks and the interpretability necessary for informed decision-making in heart disease prediction.
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Affiliation(s)
- Manomita Chakraborty
- School of Computer Science and Engineering, VIT-AP University, Amaravati, Andhra Pradesh 522237 India
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16
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Khan I, Khare BK. Exploring the potential of machine learning in gynecological care: a review. Arch Gynecol Obstet 2024; 309:2347-2365. [PMID: 38625543 DOI: 10.1007/s00404-024-07479-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2024] [Accepted: 03/10/2024] [Indexed: 04/17/2024]
Abstract
Gynecological health remains a critical aspect of women's overall well-being, with profound implications for maternal and reproductive outcomes. This comprehensive review synthesizes the current state of knowledge on four pivotal aspects of gynecological health: preterm birth, breast cancer and cervical cancer and infertility treatment. Machine learning (ML) has emerged as a transformative technology with the potential to revolutionize gynecology and women's healthcare. The subsets of AI, namely, machine learning (ML) and deep learning (DL) methods, have aided in detecting complex patterns from huge datasets and using such patterns in making predictions. This paper investigates how machine learning (ML) algorithms are employed in the field of gynecology to tackle crucial issues pertaining to women's health. This paper also investigates the integration of ultrasound technology with artificial intelligence (AI) during the initial, intermediate, and final stages of pregnancy. Additionally, it delves into the diverse applications of AI throughout each trimester.This review paper provides an overview of machine learning (ML) models, introduces natural language processing (NLP) concepts, including ChatGPT, and discusses the clinical applications of artificial intelligence (AI) in gynecology. Additionally, the paper outlines the challenges in utilizing machine learning within the field of gynecology.
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Affiliation(s)
- Imran Khan
- Harcourt Butler Technical University, Kanpur, India.
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17
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Lavanya J M S, P S. Innovative approach towards early prediction of ovarian cancer: Machine learning- enabled XAI techniques. Heliyon 2024; 10:e29197. [PMID: 39669371 PMCID: PMC11636890 DOI: 10.1016/j.heliyon.2024.e29197] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2023] [Revised: 03/28/2024] [Accepted: 04/02/2024] [Indexed: 12/14/2024] Open
Abstract
Globally, ovarian cancer affects women disproportionately, causing significant morbidity and mortality rates. The early diagnosis of ovarian cancer is necessary for enhancing patient health and survival rates. This research article explores the utilization of Machine Learning (ML) techniques alongside eXplainable Artificial Intelligence (XAI) methodologies to aid in the early detection of ovarian cancer. ML techniques have recently gained popularity in developing predictive models to detect early-stage ovarian cancer. These predictions are made using XAI in a transparent and understandable way for healthcare professionals and patients. The primary aim of this study is to evaluate the effectiveness of various ovarian cancer prediction methodologies. This includes assessing K Nearest Neighbors, Support Vector Machines, Decision trees, and ensemble learning techniques such as Max Voting, Boosting, Bagging, and Stacking. A dataset of 349 patients with known ovarian cancer status was collected from Kaggle. The dataset included a comprehensive range of clinical features such as age, family history, tumor markers, and imaging characteristics. Preprocessing techniques were applied to enhance input data, including feature scaling and dimensionality reduction. A Minimum Redundancy Maximum Relevance (MRMR) algorithm was used to select the features in the model. Our experimental results demonstrate that in Support Vector Machines, we found 85 % base model accuracy and 89 % accuracy after stacking several ensemble learning techniques. With the help of XAI, complex ML algorithms can be given more profound insights into their decision-making, improving their applicability. This paper aims to introduce the best practices for integrating ML and artificial intelligence in biomarker evaluation. Building and evaluating Shapley values-based classifiers and visualizing results were the focus of our investigation. The study contributes to the field of oncology and women's health by offering a promising approach to the early diagnosis of ovarian cancer.
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Affiliation(s)
- Sheela Lavanya J M
- School of Computer Science and Engineering, Vellore Institute of Technology, Chennai, India
| | - Subbulakshmi P
- School of Computer Science and Engineering, Vellore Institute of Technology, Chennai, India
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18
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Islam T, Sheakh MA, Tahosin MS, Hena MH, Akash S, Bin Jardan YA, FentahunWondmie G, Nafidi HA, Bourhia M. Predictive modeling for breast cancer classification in the context of Bangladeshi patients by use of machine learning approach with explainable AI. Sci Rep 2024; 14:8487. [PMID: 38605059 PMCID: PMC11009331 DOI: 10.1038/s41598-024-57740-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Accepted: 03/21/2024] [Indexed: 04/13/2024] Open
Abstract
Breast cancer has rapidly increased in prevalence in recent years, making it one of the leading causes of mortality worldwide. Among all cancers, it is by far the most common. Diagnosing this illness manually requires significant time and expertise. Since detecting breast cancer is a time-consuming process, preventing its further spread can be aided by creating machine-based forecasts. Machine learning and Explainable AI are crucial in classification as they not only provide accurate predictions but also offer insights into how the model arrives at its decisions, aiding in the understanding and trustworthiness of the classification results. In this study, we evaluate and compare the classification accuracy, precision, recall, and F1 scores of five different machine learning methods using a primary dataset (500 patients from Dhaka Medical College Hospital). Five different supervised machine learning techniques, including decision tree, random forest, logistic regression, naive bayes, and XGBoost, have been used to achieve optimal results on our dataset. Additionally, this study applied SHAP analysis to the XGBoost model to interpret the model's predictions and understand the impact of each feature on the model's output. We compared the accuracy with which several algorithms classified the data, as well as contrasted with other literature in this field. After final evaluation, this study found that XGBoost achieved the best model accuracy, which is 97%.
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Affiliation(s)
- Taminul Islam
- School of Computing, Southern Illinois University Carbondale, Carbondale, IL, USA
| | - Md Alif Sheakh
- Department of Computer Science and Engineering, Daffodil International University, Dhaka, Bangladesh
| | - Mst Sazia Tahosin
- Department of Computer Science and Engineering, Daffodil International University, Dhaka, Bangladesh
| | - Most Hasna Hena
- Department of Computer Science and Engineering, Daffodil International University, Dhaka, Bangladesh
| | - Shopnil Akash
- Department of Pharmacy, Faculty of Allied Health Sciences, Daffodil International University, Dhaka, Bangladesh
| | - Yousef A Bin Jardan
- Department of Pharmaceutics, College of Pharmacy, King Saud University, P.O. Box 11451, Riyadh, Saudi Arabia
| | | | - Hiba-Allah Nafidi
- Department of Food Science, Faculty of Agricultural and Food Sciences, Laval University, 2325, Quebec City, QC, G1V 0A6, Canada
| | - Mohammed Bourhia
- Laboratory of Biotechnology and Natural Resources Valorization, Ibn Zohr University, 80060, Agadir, Morocco
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19
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Ma'touq J, Alnuman N. Comparative analysis of features and classification techniques in breast cancer detection for Biglycan biomarker images. Cancer Biomark 2024; 40:263-273. [PMID: 39177590 PMCID: PMC11380270 DOI: 10.3233/cbm-230544] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/24/2024]
Abstract
BACKGROUND Breast cancer (BC) is considered the world's most prevalent cancer. Early diagnosis of BC enables patients to receive better care and treatment, hence lowering patient mortality rates. Breast lesion identification and classification are challenging even for experienced radiologists due to the complexity of breast tissue and variations in lesion presentations. OBJECTIVE This work aims to investigate appropriate features and classification techniques for accurate breast cancer detection in 336 Biglycan biomarker images. METHODS The Biglycan biomarker images were retrieved from the Mendeley Data website (Repository name: Biglycan breast cancer dataset). Five features were extracted and compared based on shape characteristics (i.e., Harris Points and Minimum Eigenvalue (MinEigen) Points), frequency domain characteristics (i.e., The Two-dimensional Fourier Transform and the Wavelet Transform), and statistical characteristics (i.e., histogram). Six different commonly used classification algorithms were used; i.e., K-nearest neighbours (k-NN), Naïve Bayes (NB), Pseudo-Linear Discriminate Analysis (pl-DA), Support Vector Machine (SVM), Decision Tree (DT), and Random Forest (RF). RESULTS The histogram of greyscale images showed the best performance for the k-NN (97.6%), SVM (95.8%), and RF (95.3%) classifiers. Additionally, among the five features, the greyscale histogram feature achieved the best accuracy in all classifiers with a maximum accuracy of 97.6%, while the wavelet feature provided a promising accuracy in most classifiers (up to 94.6%). CONCLUSION Machine learning demonstrates high accuracy in estimating cancer and such technology can assist doctors in the analysis of routine medical images and biopsy samples to improve early diagnosis and risk stratification.
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Affiliation(s)
- Jumana Ma'touq
- Department of Biomedical Engineering, School of Applied Medical Sciences, German Jordanian University, Amman, Jordan
| | - Nasim Alnuman
- Department of Biomedical Engineering, School of Applied Medical Sciences, German Jordanian University, Amman, Jordan
- Physiotherapy Department, Faculty of Allied Medical Sciences, Isra University, Amman, Jordan
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20
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Liu L, Wang Y, Zhang P, Qiao H, Sun T, Zhang H, Xu X, Shang H. Collaborative Transfer Network for Multi-Classification of Breast Cancer Histopathological Images. IEEE J Biomed Health Inform 2024; 28:110-121. [PMID: 37294651 DOI: 10.1109/jbhi.2023.3283042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The incidence of breast cancer is increasing rapidly around the world. Accurate classification of the breast cancer subtype from hematoxylin and eosin images is the key to improve the precision of treatment. However, the high consistency of disease subtypes and uneven distribution of cancer cells seriously affect the performance of multi-classification methods. Furthermore, it is difficult to apply existing classification methods to multiple datasets. In this article, we propose a collaborative transfer network (CTransNet) for multi-classification of breast cancer histopathological images. CTransNet consists of a transfer learning backbone branch, a residual collaborative branch, and a feature fusion module. The transfer learning branch adopts the pre-trained DenseNet structure to extract image features from ImageNet. The residual branch extracts target features from pathological images in a collaborative manner. The feature fusion strategy of optimizing these two branches is used to train and fine-tune CTransNet. Experiments show that CTransNet achieves 98.29% classification accuracy on the public BreaKHis breast cancer dataset, exceeding the performance of state-of-the-art methods. Visual analysis is carried out under the guidance of oncologists. Based on the training parameters of the BreaKHis dataset, CTransNet achieves superior performance on other two public breast cancer datasets (breast-cancer-grade-ICT and ICIAR2018_BACH_Challenge), indicating that CTransNet has good generalization performance.
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21
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Khan MJ, Singh AK, Sultana R, Singh PP, Khan A, Saxena S. Breast cancer: A comparative review for breast cancer detection using machine learning techniques. Cell Biochem Funct 2023; 41:996-1007. [PMID: 37812062 DOI: 10.1002/cbf.3868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2023] [Revised: 09/05/2023] [Accepted: 09/24/2023] [Indexed: 10/10/2023]
Abstract
Breast cancer is the most common cancer among women globally and presents a significant challenge due to its rising incidence and fatality rates. Factors such as cultural, socioeconomic, and educational barriers contribute to inadequate awareness and access to healthcare services, often leading to delayed diagnoses and poor patient outcomes. Furthermore, fostering a collaborative approach among healthcare providers, policymakers, and community leaders is crucial in addressing this critical women's health issue, reducing mortality rates, alleviating, and the overall burden of breast cancer. The main goal of this review is to explore various techniques of machine learning algorithms to examine high accuracy and early detection of breast cancer for the safe health of women.
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Affiliation(s)
- Mohd Jawed Khan
- Department of Computer Science & Engineering, Central Institute of Technology, Kokrajhar, Assam, India
| | - Arun Kumar Singh
- Department of Computer Science and Engineering, Greater Noida Institute of Technology, Greater Noida, India
| | - Razia Sultana
- Department of Biotechnology, School of Biotechnology, Gautam Buddha University, Greater Noida, India
| | - Pankaj Pratap Singh
- Department of Computer Science & Engineering, Central Institute of Technology, Kokrajhar, Assam, India
| | - Asif Khan
- Department of Computer Science and Engineering, Greater Noida Institute of Technology, Greater Noida, India
| | - Sandeep Saxena
- Department of Computer Science and Engineering, Greater Noida Institute of Technology, Greater Noida, India
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22
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Ghorbian M, Ghorbian S. Usefulness of machine learning and deep learning approaches in screening and early detection of breast cancer. Heliyon 2023; 9:e22427. [PMID: 38076050 PMCID: PMC10709063 DOI: 10.1016/j.heliyon.2023.e22427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 11/07/2023] [Accepted: 11/13/2023] [Indexed: 10/16/2024] Open
Abstract
Breast cancer (BC) is one of the most common types of cancer in women, and its prevalence is on the rise. The diagnosis of this disease in the first steps can be highly challenging. Hence, early and rapid diagnosis of this disease in its early stages increases the likelihood of a patient's recovery and survival. This study presents a systematic and detailed analysis of the various ML approaches and mechanisms employed during the BC diagnosis process. Further, this study provides a comprehensive and accurate overview of techniques, approaches, challenges, solutions, and important concepts related to this process in order to provide healthcare professionals and technologists with a deeper understanding of new screening and diagnostic tools and approaches, as well as identify new challenges and popular approaches in this field. Therefore, this study has attempted to provide a comprehensive taxonomy of applying ML techniques to BC diagnosis, focusing on the data obtained from the clinical methods diagnosis. The taxonomy presented in this study has two major components. Clinical diagnostic methods such as MRI, mammography, and hybrid methods are presented in the first part of the taxonomy. The second part involves implementing machine learning approaches such as neural networks (NN), deep learning (DL), and hybrid on the dataset in the first part. Then, the taxonomy will be analyzed based on implementing ML approaches in clinical diagnosis methods. The findings of the study demonstrated that the approaches based on NN and DL are the most accurate and widely used models for BC diagnosis compared to other diagnostic techniques, and accuracy (ACC), sensitivity (SEN), and specificity (SPE) are the most commonly used performance evaluation criteria. Additionally, factors such as the advantages and disadvantages of using machine learning techniques, as well as the objectives of each research, separately for ML technology and BC detection, as well as evaluation criteria, are discussed in this study. Lastly, this study provides an overview of open and unresolved issues related to using ML for BC diagnosis, along with a proposal to resolve each issue to assist researchers and healthcare professionals.
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Affiliation(s)
- Mohsen Ghorbian
- Department of Computer Engineering, Qom Branch, Islamic Azad University, Qom, Iran
| | - Saeid Ghorbian
- Department of Molecular Genetics, Ahar Branch, Islamic Azad University, Ahar, Iran
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23
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Owusu-Adjei M, Ben Hayfron-Acquah J, Frimpong T, Abdul-Salaam G. Imbalanced class distribution and performance evaluation metrics: A systematic review of prediction accuracy for determining model performance in healthcare systems. PLOS DIGITAL HEALTH 2023; 2:e0000290. [PMID: 38032863 PMCID: PMC10688675 DOI: 10.1371/journal.pdig.0000290] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Accepted: 10/29/2023] [Indexed: 12/02/2023]
Abstract
Focus on predictive algorithm and its performance evaluation is extensively covered in most research studies to determine best or appropriate predictive model with Optimum prediction solution indicated by prediction accuracy score, precision, recall, f1score etc. Prediction accuracy score from performance evaluation has been used extensively as the main determining metric for performance recommendation. It is one of the most widely used metric for identifying optimal prediction solution irrespective of dataset class distribution context or nature of dataset and output class distribution between the minority and majority variables. The key research question however is the impact of class inequality on prediction accuracy score in such datasets with output class distribution imbalance as compared to balanced accuracy score in the determination of model performance in healthcare and other real-world application systems. Answering this question requires an appraisal of current state of knowledge in both prediction accuracy score and balanced accuracy score use in real-world applications where there is unequal class distribution. Review of related works that highlight the use of imbalanced class distribution datasets with evaluation metrics will assist in contextualizing this systematic review.
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Affiliation(s)
- Michael Owusu-Adjei
- Department of Computer Science, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana
| | - James Ben Hayfron-Acquah
- Department of Computer Science, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana
| | - Twum Frimpong
- Department of Computer Science, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana
| | - Gaddafi Abdul-Salaam
- Department of Computer Science, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana
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24
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Sahu A, Das PK, Meher S. Recent advancements in machine learning and deep learning-based breast cancer detection using mammograms. Phys Med 2023; 114:103138. [PMID: 37914431 DOI: 10.1016/j.ejmp.2023.103138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/11/2023] [Revised: 07/22/2023] [Accepted: 09/14/2023] [Indexed: 11/03/2023] Open
Abstract
OBJECTIVE Mammogram-based automatic breast cancer detection has a primary role in accurate cancer diagnosis and treatment planning to save valuable lives. Mammography is one basic yet efficient test for screening breast cancer. Very few comprehensive surveys have been presented to briefly analyze methods for detecting breast cancer with mammograms. In this article, our objective is to give an overview of recent advancements in machine learning (ML) and deep learning (DL)-based breast cancer detection systems. METHODS We give a structured framework to categorize mammogram-based breast cancer detection techniques. Several publicly available mammogram databases and different performance measures are also mentioned. RESULTS After deliberate investigation, we find most of the works classify breast tumors either as normal-abnormal or malignant-benign rather than classifying them into three classes. Furthermore, DL-based features are more significant than hand-crafted features. However, transfer learning is preferred over others as it yields better performance in small datasets, unlike classical DL techniques. SIGNIFICANCE AND CONCLUSION In this article, we have made an attempt to give recent advancements in artificial intelligence (AI)-based breast cancer detection systems. Furthermore, a number of challenging issues and possible research directions are mentioned, which will help researchers in further scopes of research in this field.
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Affiliation(s)
- Adyasha Sahu
- Department of Electronics and Communication Engineering, National Institute of Technology, Rourkela, Odisha, 769008, India.
| | - Pradeep Kumar Das
- School of Electronics Engineering (SENSE), VIT Vellore, Tamil Nadu, 632014, India.
| | - Sukadev Meher
- Department of Electronics and Communication Engineering, National Institute of Technology, Rourkela, Odisha, 769008, India.
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Carioti D, Stucchi NA, Toneatto C, Masia MF, Del Monte M, Stefanelli S, Travellini S, Marcelli A, Tettamanti M, Vernice M, Guasti MT, Berlingeri M. The ReadFree tool for the identification of poor readers: a validation study based on a machine learning approach in monolingual and minority-language children. ANNALS OF DYSLEXIA 2023; 73:356-392. [PMID: 37548832 PMCID: PMC10522748 DOI: 10.1007/s11881-023-00287-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Accepted: 06/26/2023] [Indexed: 08/08/2023]
Abstract
In this study, we validated the "ReadFree tool", a computerised battery of 12 visual and auditory tasks developed to identify poor readers also in minority-language children (MLC). We tested the task-specific discriminant power on 142 Italian-monolingual participants (8-13 years old) divided into monolingual poor readers (N = 37) and good readers (N = 105) according to standardised Italian reading tests. The performances at the discriminant tasks of the "ReadFree tool" were entered into a classification and regression tree (CART) model to identify monolingual poor and good readers. The set of classification rules extracted from the CART model were applied to the MLC's performance and the ensuing classification was compared to the one based on standardised Italian reading tests. According to the CART model, auditory go-no/go (regular), RAN and Entrainment100bpm were the most discriminant tasks. When compared with the clinical classification, the CART model accuracy was 86% for the monolinguals and 76% for the MLC. Executive functions and timing skills turned out to have a relevant role in reading. Results of the CART model on MLC support the idea that ad hoc standardised tasks that go beyond reading are needed.
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Affiliation(s)
- Desiré Carioti
- DISTUM, Department of Humanities, University of Urbino Carlo Bo, Urbino, Italy
- Psychology Department, University of Milano-Bicocca, Milan, Italy
| | | | - Carlo Toneatto
- Psychology Department, University of Milano-Bicocca, Milan, Italy
| | - Marta Franca Masia
- DISTUM, Department of Humanities, University of Urbino Carlo Bo, Urbino, Italy
| | - Milena Del Monte
- DISTUM, Department of Humanities, University of Urbino Carlo Bo, Urbino, Italy
- Center of Developmental Neuropsychology, AST Pesaro-Urbino, Distretto di Pesaro, Pesaro, Italy
| | - Silvia Stefanelli
- DISTUM, Department of Humanities, University of Urbino Carlo Bo, Urbino, Italy
- Department of Human Sciences, University of the Republic of San Marino, San Marino, Republic of San Marino
| | - Simona Travellini
- DISTUM, Department of Humanities, University of Urbino Carlo Bo, Urbino, Italy
- Center of Developmental Neuropsychology, AST Pesaro-Urbino, Distretto di Pesaro, Pesaro, Italy
| | - Antonella Marcelli
- Center of Developmental Neuropsychology, AST Pesaro-Urbino, Distretto di Pesaro, Pesaro, Italy
| | - Marco Tettamanti
- Psychology Department, University of Milano-Bicocca, Milan, Italy
| | - Mirta Vernice
- DISTUM, Department of Humanities, University of Urbino Carlo Bo, Urbino, Italy
| | | | - Manuela Berlingeri
- DISTUM, Department of Humanities, University of Urbino Carlo Bo, Urbino, Italy
- Center of Developmental Neuropsychology, AST Pesaro-Urbino, Distretto di Pesaro, Pesaro, Italy
- NeuroMi, Milan Center for Neuroscience, Milan, Italy
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Ashurov A, Chelloug SA, Tselykh A, Muthanna MSA, Muthanna A, Al-Gaashani MSAM. Improved Breast Cancer Classification through Combining Transfer Learning and Attention Mechanism. Life (Basel) 2023; 13:1945. [PMID: 37763348 PMCID: PMC10532552 DOI: 10.3390/life13091945] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Revised: 09/16/2023] [Accepted: 09/17/2023] [Indexed: 09/29/2023] Open
Abstract
Breast cancer, a leading cause of female mortality worldwide, poses a significant health challenge. Recent advancements in deep learning techniques have revolutionized breast cancer pathology by enabling accurate image classification. Various imaging methods, such as mammography, CT, MRI, ultrasound, and biopsies, aid in breast cancer detection. Computer-assisted pathological image classification is of paramount importance for breast cancer diagnosis. This study introduces a novel approach to breast cancer histopathological image classification. It leverages modified pre-trained CNN models and attention mechanisms to enhance model interpretability and robustness, emphasizing localized features and enabling accurate discrimination of complex cases. Our method involves transfer learning with deep CNN models-Xception, VGG16, ResNet50, MobileNet, and DenseNet121-augmented with the convolutional block attention module (CBAM). The pre-trained models are finetuned, and the two CBAM models are incorporated at the end of the pre-trained models. The models are compared to state-of-the-art breast cancer diagnosis approaches and tested for accuracy, precision, recall, and F1 score. The confusion matrices are used to evaluate and visualize the results of the compared models. They help in assessing the models' performance. The test accuracy rates for the attention mechanism (AM) using the Xception model on the "BreakHis" breast cancer dataset are encouraging at 99.2% and 99.5%. The test accuracy for DenseNet121 with AMs is 99.6%. The proposed approaches also performed better than previous approaches examined in the related studies.
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Affiliation(s)
- Asadulla Ashurov
- School of Communication and Information Engineering, Chongqing University of Posts and Telecommunications, Chongqing 400065, China;
| | - Samia Allaoua Chelloug
- Department of Information Technology, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Alexey Tselykh
- Institute of Computer Technologies and Information Security, Southern Federal University, Taganrog 347922, Russia; (A.T.); (M.S.A.M.)
| | - Mohammed Saleh Ali Muthanna
- Institute of Computer Technologies and Information Security, Southern Federal University, Taganrog 347922, Russia; (A.T.); (M.S.A.M.)
| | - Ammar Muthanna
- RUDN University, 6 Miklukho-Maklaya Street, Moscow 117198, Russia;
| | - Mehdhar S. A. M. Al-Gaashani
- College of Computer Science and Technology, Chongqing University of Posts and Telecommunications, Chongqing 400065, China;
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Jung JJ, Kim EK, Kang E, Kim JH, Kim SH, Suh KJ, Kim SM, Jang M, Yun BL, Park SY, Lim C, Han W, Shin HC. Development and External Validation of a Machine Learning Model to Predict Pathological Complete Response After Neoadjuvant Chemotherapy in Breast Cancer. J Breast Cancer 2023; 26:353-362. [PMID: 37272242 PMCID: PMC10475713 DOI: 10.4048/jbc.2023.26.e14] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2022] [Revised: 02/14/2023] [Accepted: 03/01/2023] [Indexed: 04/09/2023] Open
Abstract
PURPOSE Several predictive models have been developed to predict the pathological complete response (pCR) after neoadjuvant chemotherapy (NAC); however, few are broadly applicable owing to radiologic complexity and institution-specific clinical variables, and none have been externally validated. This study aimed to develop and externally validate a machine learning model that predicts pCR after NAC in patients with breast cancer using routinely collected clinical and demographic variables. METHODS The electronic medical records of patients with advanced breast cancer who underwent NAC before surgical resection between January 2017 and December 2020 were reviewed. Patient data from Seoul National University Bundang Hospital were divided into training and internal validation cohorts. Five machine learning techniques, including gradient boosting machine (GBM), support vector machine, random forest, decision tree, and neural network, were used to build predictive models, and the area under the receiver operating characteristic curve (AUC) was compared to select the best model. Finally, the model was validated using an independent cohort from Seoul National University Hospital. RESULTS A total of 1,003 patients were included in the study: 287, 71, and 645 in the training, internal validation, and external validation cohorts, respectively. Overall, 36.3% of the patients achieved pCR. Among the five machine learning models, the GBM showed the highest AUC for pCR prediction (AUC, 0.903; 95% confidence interval [CI], 0.833-0.972). External validation confirmed an AUC of 0.833 (95% CI, 0.800-0.865). CONCLUSION Commonly available clinical and demographic variables were used to develop a machine learning model for predicting pCR following NAC. External validation of the model demonstrated good discrimination power, indicating that routinely collected variables were sufficient to build a good prediction model.
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Affiliation(s)
- Ji-Jung Jung
- Department of Surgery, Seoul National University College of Medicine, Seoul, Korea
| | - Eun-Kyu Kim
- Department of Surgery, Seoul National University College of Medicine, Seoul, Korea
- Department of Surgery, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam, Korea
| | - Eunyoung Kang
- Department of Surgery, Seoul National University College of Medicine, Seoul, Korea
- Department of Surgery, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam, Korea
| | - Jee Hyun Kim
- Department of Internal Medicine, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam, Korea
| | - Se Hyun Kim
- Department of Internal Medicine, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam, Korea
| | - Koung Jin Suh
- Department of Internal Medicine, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam, Korea
| | - Sun Mi Kim
- Department of Radiology, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam, Korea
| | - Mijung Jang
- Department of Radiology, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam, Korea
| | - Bo La Yun
- Department of Radiology, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam, Korea
| | - So Yeon Park
- Department of Pathology, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam, Korea
| | - Changjin Lim
- Department of Surgery, Seoul National University College of Medicine, Seoul, Korea
| | - Wonshik Han
- Department of Surgery, Seoul National University College of Medicine, Seoul, Korea
- Cancer Research Institute, Seoul National University College of Medicine, Seoul, Korea
| | - Hee-Chul Shin
- Department of Surgery, Seoul National University College of Medicine, Seoul, Korea
- Department of Surgery, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam, Korea.
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Khan Mamun MMR, Elfouly T. Detection of Cardiovascular Disease from Clinical Parameters Using a One-Dimensional Convolutional Neural Network. Bioengineering (Basel) 2023; 10:796. [PMID: 37508823 PMCID: PMC10376462 DOI: 10.3390/bioengineering10070796] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Revised: 06/29/2023] [Accepted: 06/30/2023] [Indexed: 07/30/2023] Open
Abstract
Heart disease is a significant public health problem, and early detection is crucial for effective treatment and management. Conventional and noninvasive techniques are cumbersome, time-consuming, inconvenient, expensive, and unsuitable for frequent measurement or diagnosis. With the advance of artificial intelligence (AI), new invasive techniques emerging in research are detecting heart conditions using machine learning (ML) and deep learning (DL). Machine learning models have been used with the publicly available dataset from the internet about heart health; in contrast, deep learning techniques have recently been applied to analyze electrocardiograms (ECG) or similar vital data to detect heart diseases. Significant limitations of these datasets are their small size regarding the number of patients and features and the fact that many are imbalanced datasets. Furthermore, the trained models must be more reliable and accurate in medical settings. This study proposes a hybrid one-dimensional convolutional neural network (1D CNN), which uses a large dataset accumulated from online survey data and selected features using feature selection algorithms. The 1D CNN proved to show better accuracy compared to contemporary machine learning algorithms and artificial neural networks. The non-coronary heart disease (no-CHD) and CHD validation data showed an accuracy of 80.1% and 76.9%, respectively. The model was compared with an artificial neural network, random forest, AdaBoost, and a support vector machine. Overall, 1D CNN proved to show better performance in terms of accuracy, false negative rates, and false positive rates. Similar strategies were applied for four more heart conditions, and the analysis proved that using the hybrid 1D CNN produced better accuracy.
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Affiliation(s)
| | - Tarek Elfouly
- Department of Electrical and Computer Engineering, Tennessee Technological University, Cookeville, TN 38505, USA
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Albadr MAA, Ayob M, Tiun S, AL-Dhief FT, Arram A, Khalaf S. Breast cancer diagnosis using the fast learning network algorithm. Front Oncol 2023; 13:1150840. [PMID: 37434975 PMCID: PMC10332166 DOI: 10.3389/fonc.2023.1150840] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Accepted: 04/10/2023] [Indexed: 07/13/2023] Open
Abstract
The use of machine learning (ML) and data mining algorithms in the diagnosis of breast cancer (BC) has recently received a lot of attention. The majority of these efforts, however, still require improvement since either they were not statistically evaluated or they were evaluated using insufficient assessment metrics, or both. One of the most recent and effective ML algorithms, fast learning network (FLN), may be seen as a reputable and efficient approach for classifying data; however, it has not been applied to the problem of BC diagnosis. Therefore, this study proposes the FLN algorithm in order to improve the accuracy of the BC diagnosis. The FLN algorithm has the capability to a) eliminate overfitting, b) solve the issues of both binary and multiclass classification, and c) perform like a kernel-based support vector machine with a structure of the neural network. In this study, two BC databases (Wisconsin Breast Cancer Database (WBCD) and Wisconsin Diagnostic Breast Cancer (WDBC)) were used to assess the performance of the FLN algorithm. The results of the experiment demonstrated the great performance of the suggested FLN method, which achieved an average of accuracy 98.37%, precision 95.94%, recall 99.40%, F-measure 97.64%, G-mean 97.65%, MCC 96.44%, and specificity 97.85% using the WBCD, as well as achieved an average of accuracy 96.88%, precision 94.84%, recall 96.81%, F-measure 95.80%, G-mean 95.81%, MCC 93.35%, and specificity 96.96% using the WDBC database. This suggests that the FLN algorithm is a reliable classifier for diagnosing BC and may be useful for resolving other application-related problems in the healthcare sector.
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Affiliation(s)
- Musatafa Abbas Abbood Albadr
- Center for Artificial Intelligence Technology (CAIT), Faculty of Information Science and Technology, Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia
| | - Masri Ayob
- Center for Artificial Intelligence Technology (CAIT), Faculty of Information Science and Technology, Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia
| | - Sabrina Tiun
- Center for Artificial Intelligence Technology (CAIT), Faculty of Information Science and Technology, Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia
| | - Fahad Taha AL-Dhief
- Department of Communication Engineering, School of Electrical Engineering, Universiti Teknologi Malaysia, (UTM), Johor Bahru, Johor, Malaysia
| | - Anas Arram
- Department of Computer Science, Birzeit University, Birzeit, Palestine
| | - Sura Khalaf
- Department of Communication Technology Engineering, College of Information Technology, Imam Ja’afer Al-Sadiq University, Baghdad, Iraq
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Pham A, Tran T, Tran P, Huynh H. Predicting Breast Cancer with Ensemble Methods on Cloud. EAI ENDORSED TRANSACTIONS ON CONTEXT-AWARE SYSTEMS AND APPLICATIONS 2023. [DOI: 10.4108/eetcasa.v8i2.2788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/31/2023] Open
Abstract
There are many dangerous diseases and high mortality rates for women (including breast cancer). If the disease is detected early, correctly diagnosed and treated at the right time, the likelihood of illness and death is reduced. Previous disease prediction models have mainly focused on methods for building individual models. However, these predictive models do not yet have high accuracy and high generalization performance. In this paper, we focus on combining these individual models together to create a combined model, which is more generalizable than the individual models. Three ensemble techniques used in the experiment are: Bagging; Boosting and Stacking (Stacking include three models: Gradient Boost, Random Forest, Logistic Regression) to deploy and apply to breast cancer prediction problem. The experimental results show the combined model with the ensemble methods based on the Breast Cancer Wisconsin dataset; this combined model has a higher predictive performance than the commonly used individual prediction models.
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Faur AC, Lazar DC, Ghenciu LA. Artificial intelligence as a noninvasive tool for pancreatic cancer prediction and diagnosis. World J Gastroenterol 2023; 29:1811-1823. [PMID: 37032728 PMCID: PMC10080704 DOI: 10.3748/wjg.v29.i12.1811] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 12/23/2022] [Accepted: 03/15/2023] [Indexed: 03/28/2023] Open
Abstract
Pancreatic cancer (PC) has a low incidence rate but a high mortality, with patients often in the advanced stage of the disease at the time of the first diagnosis. If detected, early neoplastic lesions are ideal for surgery, offering the best prognosis. Preneoplastic lesions of the pancreas include pancreatic intraepithelial neoplasia and mucinous cystic neoplasms, with intraductal papillary mucinous neoplasms being the most commonly diagnosed. Our study focused on predicting PC by identifying early signs using noninvasive techniques and artificial intelligence (AI). A systematic English literature search was conducted on the PubMed electronic database and other sources. We obtained a total of 97 studies on the subject of pancreatic neoplasms. The final number of articles included in our study was 44, 34 of which focused on the use of AI algorithms in the early diagnosis and prediction of pancreatic lesions. AI algorithms can facilitate diagnosis by analyzing massive amounts of data in a short period of time. Correlations can be made through AI algorithms by expanding image and electronic medical records databases, which can later be used as part of a screening program for the general population. AI-based screening models should involve a combination of biomarkers and medical and imaging data from different sources. This requires large numbers of resources, collaboration between medical practitioners, and investment in medical infrastructures.
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Affiliation(s)
- Alexandra Corina Faur
- Department of Anatomy and Embriology, “Victor Babeș” University of Medicine and Pharmacy Timișoara, Timișoara 300041, Timiș, Romania
| | - Daniela Cornelia Lazar
- Department V of Internal Medicine I, Discipline of Internal Medicine IV, University of Medicine and Pharmacy “Victor Babes” Timișoara, Timișoara 300041, Timiș, Romania
| | - Laura Andreea Ghenciu
- Department III, Discipline of Pathophysiology, “Victor Babeș” University of Medicine and Pharmacy, Timișoara 300041, Timiș, Romania
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An ensemble algorithm using quantum evolutionary optimization of weighted type-II fuzzy system and staged Pegasos Quantum Support Vector Classifier with multi-criteria decision making system for diagnosis and grading of breast cancer. Soft comput 2023. [DOI: 10.1007/s00500-023-07939-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/20/2023]
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Huyut MT, Huyut Z. Effect of ferritin, INR, and D-dimer immunological parameters levels as predictors of COVID-19 mortality: A strong prediction with the decision trees. Heliyon 2023; 9:e14015. [PMID: 36919085 PMCID: PMC9985543 DOI: 10.1016/j.heliyon.2023.e14015] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 01/25/2023] [Accepted: 02/17/2023] [Indexed: 03/07/2023] Open
Abstract
Background and objective A hyperinflammatory environment is thought to be the distinctive characteristic of COVID-19 infection and an important mediator of morbidity. This study aimed to determine the effect of other immunological parameter levels, especially ferritin, as a predictor of COVID-19 mortality via decision-trees analysis. Material and method This is a retrospective study evaluating a total of 2568 patients who died (n = 232) and recovered (n = 2336) from COVID-19 in August and December 2021. Immunological laboratory data were compared between two groups that died and recovered from patients with COVID-19. In addition, decision trees from machine learning models were used to evaluate the performance of immunological parameters in the mortality of the COVID-19 disease. Results Non-surviving from COVID-19 had 1.75 times higher ferritin, 10.7 times higher CRP, 2.4 times higher D-dimer, 1.14 times higher international-normalized-ratio (INR), 1.1 times higher Fibrinogen, 22.9 times higher procalcitonin, 3.35 times higher troponin, 2.77 mm/h times higher erythrocyte-sedimentation-rate (ESR), 1.13sec times longer prothrombin time (PT) when compared surviving patients. In addition, our interpretable decision tree, which was constructed with only the cut-off values of ferritin, INR, and D-dimer, correctly predicted 99.7% of surviving patients and 92.7% of non-surviving patients. Conclusions This study perfectly predicted the mortality of COVID-19 with our interpretable decision tree constructed with INR and D-dimer, especially ferritin. For this reason, we think that it may be important to include ferritin, INR, and D-dimer parameters and their cut-off values in the scoring systems to be planned for COVID-19 mortality.
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Affiliation(s)
- Mehmet Tahir Huyut
- Erzincan Binali Yıldırım University, Faculty of Medicine, Department of Biostatistics and Medical Informatics, Erzincan, Turkey
| | - Zübeyir Huyut
- Van Yuzuncu Yıl University, Faculty of Medicine, Department of Biochemistry, Van, Turkey
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Shimokawa D, Takahashi K, Kurosawa D, Takaya E, Oba K, Yagishita K, Fukuda T, Tsunoda H, Ueda T. Deep learning model for breast cancer diagnosis based on bilateral asymmetrical detection (BilAD) in digital breast tomosynthesis images. Radiol Phys Technol 2023; 16:20-27. [PMID: 36342640 DOI: 10.1007/s12194-022-00686-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Revised: 10/23/2022] [Accepted: 10/25/2022] [Indexed: 11/09/2022]
Abstract
The purpose of this study was to develop a deep learning model to diagnose breast cancer by embedding a diagnostic algorithm that examines the asymmetry of bilateral breast tissue. This retrospective study was approved by the institutional review board. A total of 115 patients who underwent breast surgery and had pathologically confirmed breast cancer were enrolled in this study. Two image pairs [230 pairs of bilateral breast digital breast tomosynthesis (DBT) images with 115 malignant tumors and contralateral tissue (M/N), and 115 bilateral normal areas (N/N)] were generated from each patient enrolled in this study. The proposed deep learning model is called bilateral asymmetrical detection (BilAD), which is a modified convolutional neural network (CNN) model of Xception with two-dimensional tensors for bilateral breast images. BilAD was trained to classify the differences between pairs of M/N and N/N datasets. The results of the BilAD model were compared to those of the unilateral control CNN model (uCNN). The results of BilAD and the uCNN were as follows: accuracy, 0.84 and 0.75; sensitivity, 0.73 and 0.58; and specificity, 0.93 and 0.92, respectively. The mean area under the receiver operating characteristic curve of BilAD was significantly higher than that of the uCNN (p = 0.02): 0.90 and 0.84, respectively. The proposed deep learning model trained by embedding a diagnostic algorithm to examine the asymmetry of bilateral breast tissue improves the diagnostic accuracy for breast cancer.
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Affiliation(s)
- Daiki Shimokawa
- Department of Clinical Imaging, Tohoku University Graduate School of Medicine, 2-1 Seiryo-Machi, Aoba-Ku, Sendai, Miyagi, 980-8575, Japan
| | - Kengo Takahashi
- Department of Clinical Imaging, Tohoku University Graduate School of Medicine, 2-1 Seiryo-Machi, Aoba-Ku, Sendai, Miyagi, 980-8575, Japan
| | - Daiya Kurosawa
- Department of Clinical Imaging, Tohoku University Graduate School of Medicine, 2-1 Seiryo-Machi, Aoba-Ku, Sendai, Miyagi, 980-8575, Japan
| | - Eichi Takaya
- AI Lab, Tohoku University Hospital, 1-1 Seiryo-Machi, Aoba-Ku, Sendai, Miyagi, 980-8574, Japan
| | - Ken Oba
- Department of Radiology, St. Luke's International Hospital, 9-1, Akashi-Cho, Chuo-Ku, Tokyo, Tokyo, 104-8560, Japan
| | - Kazuyo Yagishita
- Department of Radiology, St. Luke's International Hospital, 9-1, Akashi-Cho, Chuo-Ku, Tokyo, Tokyo, 104-8560, Japan
| | - Toshinori Fukuda
- Department of Radiology, St. Luke's International Hospital, 9-1, Akashi-Cho, Chuo-Ku, Tokyo, Tokyo, 104-8560, Japan
| | - Hiroko Tsunoda
- Department of Radiology, St. Luke's International Hospital, 9-1, Akashi-Cho, Chuo-Ku, Tokyo, Tokyo, 104-8560, Japan
| | - Takuya Ueda
- Department of Clinical Imaging, Tohoku University Graduate School of Medicine, 2-1 Seiryo-Machi, Aoba-Ku, Sendai, Miyagi, 980-8575, Japan. .,AI Lab, Tohoku University Hospital, 1-1 Seiryo-Machi, Aoba-Ku, Sendai, Miyagi, 980-8574, Japan.
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35
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Sonia SVE, Nedunchezhian R, Ramakrishnan S, Kannammal KE. An empirical evaluation of benchmark machine learning classifiers for risk prediction of cardiovascular disease in diabetic males. INTERNATIONAL JOURNAL OF HEALTHCARE MANAGEMENT 2023. [DOI: 10.1080/20479700.2023.2170006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- S. V. Evangelin Sonia
- Computer Science and Engineering, Karunya Institute of Technology and Sciences, Karunya University, Coimbatore, India
| | - R. Nedunchezhian
- Computer Science and Engineering, Coimbatore Institute of Technology, Coimbatore, India
| | - S. Ramakrishnan
- Information Technology, Dr. Mahalingam College of Engineering and Technology, Coimbatore, India
| | - K. E. Kannammal
- Computer Science and Engineering, Sri Shakthi Institute of Engineering and Technology, Coimbatore, India
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Boubacar Goga A. Artificial Intelligence at the Service of Medical Imaging in the Detection of Breast Tumors. ARTIF INTELL 2023. [DOI: 10.5772/intechopen.108739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Artificial intelligence is currently capable of imitating clinical reasoning in order to make a diagnosis, in particular that of breast cancer. This is possible, thanks to the exponential increase in medical images. Indeed, artificial intelligence systems are used to assist doctors and not replace them. Breast cancer is a cancerous tumor that can invade and destroy nearby tissue. Therefore, early and reliable detection of this disease is a great asset for the medical field. Some people use medical imaging techniques to diagnose this disease. Given the drawbacks of these techniques, diagnostic errors of doctors related to fatigue or inexperience, this work consists of showing how artificial intelligence methods, in particular artificial neural networks (ANN), deep learning (DL), support vector machines (SVM), expert systems, fuzzy logic can be applied on breast imaging, with the aim of improving the detection of this global scourge. Finally, the proposed system is composed of two (2) essential steps: the tumor detection phase and the diagnostic phase allowing the latter to decide whether the tumor is benign or malignant.
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Vinod DN, Prabaharan SRS. COVID-19-The Role of Artificial Intelligence, Machine Learning, and Deep Learning: A Newfangled. ARCHIVES OF COMPUTATIONAL METHODS IN ENGINEERING : STATE OF THE ART REVIEWS 2023; 30:2667-2682. [PMID: 36685135 PMCID: PMC9843670 DOI: 10.1007/s11831-023-09882-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Accepted: 01/05/2023] [Indexed: 05/29/2023]
Abstract
The absolute previously infected novel coronavirus (COVID-19) was found in Wuhan, China, in December 2019. The COVID-19 epidemic has spread to more than 220 nations and territories globally and has altogether influenced each part of our day-to-day lives. As of 9th March 2022, a total aggregate of 44,78,82,185 (60,07,317) contaminated (dead) COVID-19 cases were accounted for all over the world. The quantities of contaminated cases passing despite everything increment essentially and do not indicate a controlled circumstance. The scope of this paper is to address this issue by presenting a comprehensive and comparative analysis of the existing Machine Learning (ML), Deep Learning (DL) and Artificial Intelligence (AI) based approaches used in significance in reacting to the COVID-19 epidemic and diagnosing the severe impacts. The paper provides, firstly, an overview of COVID-19 infection and highlights of this article; Secondly, an overview of exploring various executive innovations by utilizing different resources to stop the spread of COVID-19; Thirdly, a comparison of existing predicting methods of COVID-19 in the literature, with focus on ML, DL and AI-driven techniques with performance metrics; and finally, a discussion on the results of the work as well as future scope.
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Affiliation(s)
- Dasari Naga Vinod
- Department of Electronics and Communication Engineering, Vel Tech Rangarajan Dr. Sagunthala R&D Institute of Science and Technology, Avadi, Chennai, Tamil Nadu 600062 India
| | - S. R. S. Prabaharan
- Sathyabama Centre for Advanced Studies, Sathyabama Institute of Science and Technology, Rajiv Gandhi Salai, Chennai, Tamil Nadu 600119 India
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Ogundokun RO, Misra S, Akinrotimi AO, Ogul H. MobileNet-SVM: A Lightweight Deep Transfer Learning Model to Diagnose BCH Scans for IoMT-Based Imaging Sensors. SENSORS (BASEL, SWITZERLAND) 2023; 23:656. [PMID: 36679455 PMCID: PMC9863875 DOI: 10.3390/s23020656] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/15/2022] [Revised: 12/02/2022] [Accepted: 12/16/2022] [Indexed: 06/17/2023]
Abstract
Many individuals worldwide pass away as a result of inadequate procedures for prompt illness identification and subsequent treatment. A valuable life can be saved or at least extended with the early identification of serious illnesses, such as various cancers and other life-threatening conditions. The development of the Internet of Medical Things (IoMT) has made it possible for healthcare technology to offer the general public efficient medical services and make a significant contribution to patients' recoveries. By using IoMT to diagnose and examine BreakHis v1 400× breast cancer histology (BCH) scans, disorders may be quickly identified and appropriate treatment can be given to a patient. Imaging equipment having the capability of auto-analyzing acquired pictures can be used to achieve this. However, the majority of deep learning (DL)-based image classification approaches are of a large number of parameters and unsuitable for application in IoMT-centered imaging sensors. The goal of this study is to create a lightweight deep transfer learning (DTL) model suited for BCH scan examination and has a good level of accuracy. In this study, a lightweight DTL-based model "MobileNet-SVM", which is the hybridization of MobileNet and Support Vector Machine (SVM), for auto-classifying BreakHis v1 400× BCH images is presented. When tested against a real dataset of BreakHis v1 400× BCH images, the suggested technique achieved a training accuracy of 100% on the training dataset. It also obtained an accuracy of 91% and an F1-score of 91.35 on the test dataset. Considering how complicated BCH scans are, the findings are encouraging. The MobileNet-SVM model is ideal for IoMT imaging equipment in addition to having a high degree of precision. According to the simulation findings, the suggested model requires a small computation speed and time.
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Affiliation(s)
- Roseline Oluwaseun Ogundokun
- Department of Multimedia Engineering, Kaunas University of Technology, 44249 Kaunas, Lithuania
- Department of Computer Science, Landmark University, Omu Aran 251103, Kwara, Nigeria
| | - Sanjay Misra
- Department of Computer Science and Communication, Østfold University College, 1757 Halden, Norway
| | | | - Hasan Ogul
- Department of Computer Science and Communication, Østfold University College, 1757 Halden, Norway
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Dou J, Dawuti W, Zheng X, Zhang R, Zhou J, Lin R, Lü G. Urine fluorescence spectroscopy combined with machine learning for screening of hepatocellular carcinoma and liver cirrhosis. Photodiagnosis Photodyn Ther 2022; 40:103102. [PMID: 36057362 DOI: 10.1016/j.pdpdt.2022.103102] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Revised: 08/23/2022] [Accepted: 08/30/2022] [Indexed: 12/14/2022]
Abstract
In this paper, we investigated the possibility of using urine fluorescence spectroscopy and machine learning method to identify hepatocellular carcinoma (HCC) and liver cirrhosis from healthy people. Urine fluorescence spectra of HCC (n = 62), liver cirrhosis (n = 65) and normal people (n = 60) were recorded at 405 nm excitation using a Fluorescent scan multimode reader. The normalized fluorescence spectra revealed endogenous metabolites differences associated with the disease, mainly the abnormal metabolism of porphyrin derivatives and bilirubin in the urine of patients with HCC and liver cirrhosis compared to normal people. The Support vector machine (SVM) algorithm was used to differentiate the urine fluorescence spectra of the HCC, liver cirrhosis and normal groups, and its overall diagnostic accuracy was 83.42%, the sensitivity for HCC and liver cirrhosis were 93.55% and 73.85%, and the specificity for HCC and liver cirrhosis were 88.00% and 89.34%, respectively. This exploratory work shown that the combination of urine fluorescence spectroscopy and SVM algorithm has great potential for the noninvasive screening of HCC and liver cirrhosis.
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Affiliation(s)
- Jingrui Dou
- State Key Laboratory of Pathogenesis, Prevention, and Treatment of Central Asian High Incidence Diseases, Clinical Medical Research Institute, The First Affiliated Hospital of Xinjiang Medical University, No. 137 Liyushan South Road, Urumqi 830054, China; School of Public Health, Xinjiang Medical University, Urumqi 830054, China
| | - Wubulitalifu Dawuti
- State Key Laboratory of Pathogenesis, Prevention, and Treatment of Central Asian High Incidence Diseases, Clinical Medical Research Institute, The First Affiliated Hospital of Xinjiang Medical University, No. 137 Liyushan South Road, Urumqi 830054, China; School of Public Health, Xinjiang Medical University, Urumqi 830054, China
| | - Xiangxiang Zheng
- School of Electronic Engineering, Beijing University of Posts and Telecommunications, Beijing 100876, China
| | - Rui Zhang
- State Key Laboratory of Pathogenesis, Prevention, and Treatment of Central Asian High Incidence Diseases, Clinical Medical Research Institute, The First Affiliated Hospital of Xinjiang Medical University, No. 137 Liyushan South Road, Urumqi 830054, China; School of Public Health, Xinjiang Medical University, Urumqi 830054, China
| | - Jing Zhou
- State Key Laboratory of Pathogenesis, Prevention, and Treatment of Central Asian High Incidence Diseases, Clinical Medical Research Institute, The First Affiliated Hospital of Xinjiang Medical University, No. 137 Liyushan South Road, Urumqi 830054, China; College of Pharmacy, Xinjiang Medical University, Urumqi 830054, China
| | - Renyong Lin
- State Key Laboratory of Pathogenesis, Prevention, and Treatment of Central Asian High Incidence Diseases, Clinical Medical Research Institute, The First Affiliated Hospital of Xinjiang Medical University, No. 137 Liyushan South Road, Urumqi 830054, China.
| | - Guodong Lü
- State Key Laboratory of Pathogenesis, Prevention, and Treatment of Central Asian High Incidence Diseases, Clinical Medical Research Institute, The First Affiliated Hospital of Xinjiang Medical University, No. 137 Liyushan South Road, Urumqi 830054, China.
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Khan A, Khan A, Ullah M, Alam MM, Bangash JI, Suud MM. A computational classification method of breast cancer images using the VGGNet model. Front Comput Neurosci 2022; 16:1001803. [DOI: 10.3389/fncom.2022.1001803] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2022] [Accepted: 09/12/2022] [Indexed: 11/06/2022] Open
Abstract
Cancer is one of the most prevalent diseases worldwide. The most prevalent condition in women when aberrant cells develop out of control is breast cancer. Breast cancer detection and classification are exceedingly difficult tasks. As a result, several computational techniques, including k-nearest neighbor (KNN), support vector machine (SVM), multilayer perceptron (MLP), decision tree (DT), and genetic algorithms, have been applied in the current computing world for the diagnosis and classification of breast cancer. However, each method has its own limitations to how accurately it can be utilized. A novel convolutional neural network (CNN) model based on the Visual Geometry Group network (VGGNet) was also suggested in this study. The 16 layers in the current VGGNet-16 model lead to overfitting on the training and test data. We, thus, propose the VGGNet-12 model for breast cancer classification. The VGGNet-16 model has the problem of overfitting the breast cancer classification dataset. Based on the overfitting issues in the existing model, this research reduced the number of different layers in the VGGNet-16 model to solve the overfitting problem in this model. Because various models of the VGGNet, such as VGGNet-13 and VGGNet-19, were developed, this study proposed a new version of the VGGNet model, that is, the VGGNet-12 model. The performance of this model is checked using the breast cancer dataset, as compared to the CNN and LeNet models. From the simulation result, it can be seen that the proposed VGGNet-12 model enhances the simulation result as compared to the model used in this study. Overall, the experimental findings indicate that the suggested VGGNet-12 model did well in classifying breast cancer in terms of several characteristics.
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Sardar I, Akbar MA, Leiva V, Alsanad A, Mishra P. Machine learning and automatic ARIMA/Prophet models-based forecasting of COVID-19: methodology, evaluation, and case study in SAARC countries. STOCHASTIC ENVIRONMENTAL RESEARCH AND RISK ASSESSMENT : RESEARCH JOURNAL 2022; 37:345-359. [PMID: 36217358 PMCID: PMC9533996 DOI: 10.1007/s00477-022-02307-x] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Accepted: 08/26/2022] [Indexed: 06/16/2023]
Abstract
Machine learning (ML) has proved to be a prominent study field while solving complex real-world problems. The whole globe has suffered and continues suffering from Coronavirus disease 2019 (COVID-19), and its projections need to be forecasted. In this article, we propose and derive an autoregressive modeling framework based on ML and statistical methods to predict confirmed cases of COVID-19 in the South Asian Association for Regional Cooperation (SAARC) countries. Automatic forecasting models based on autoregressive integrated moving average (ARIMA) and Prophet time series structures, as well as extreme gradient boosting, generalized linear model elastic net (GLMNet), and random forest ML techniques, are introduced and applied to COVID-19 data from the SAARC countries. Different forecasting models are compared by means of selection criteria. By using evaluation metrics, the best and suitable models are selected. Results prove that the ARIMA model is found to be suitable and ideal for forecasting confirmed infected cases of COVID-19 in these countries. For the confirmed cases in Afghanistan, Bangladesh, India, Maldives, and Sri Lanka, the ARIMA model is superior to the other models. In Bhutan, the Prophet time series model is appropriate for predicting such cases. The GLMNet model is more accurate than other time-series models for Nepal and Pakistan. The random forest model is excluded from forecasting because of its poor fit.
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Affiliation(s)
- Iqra Sardar
- Department of Mathematics and Statistics, International Islamic University Islamabad, Islamabad, Pakistan
| | | | - Víctor Leiva
- School of Industrial Engineering, Pontificia Universidad Católica de Valparaíso, Valparaíso, Chile
| | - Ahmed Alsanad
- STC’s Artificial Intelligence Chair, Department of Information Systems, College of Computer and Information Sciences, King Saud University, Riyadh, Saudi Arabia
| | - Pradeep Mishra
- Department of Statistics, College of Agriculture, Powarkheda, India
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A Diagnostic Model of Breast Cancer Based on Digital Mammogram Images Using Machine Learning Techniques. APPLIED COMPUTATIONAL INTELLIGENCE AND SOFT COMPUTING 2022. [DOI: 10.1155/2022/3895976] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Breast cancer disease is one of the most recorded cancers that lead to morbidity and maybe death among women around the world. Recent research statistics have exposed that one from 8 females in the USA and one from 10 females in Europe are contaminated by breast cancer. The challenge with this disease is how to develop a relaxed and fast diagnosing method. One of the attractive ways of early breast cancer diagnosis is based on the mammogram images analysis of the breast using a computer-aided diagnosing (CAD) tool. This paper firstly aimed to propose an efficient method for diagnosing tumors based on mammogram images of breasts using a machine learning approach. Secondly, this paper aimed to the development of a CAD software program for breast cancer diagnosing based on the proposed method in the first step. The followed step-by-step procedure of the proposed method is performed by passing the Mammographic Image Analysis Society (MIAS) through five steps of image preprocessing, image segmentation using seeded region growing (SRG) algorithm, feature extraction using different feature’s extraction classes, and important and effectiveness feature selection using the Sequential Forward Selection (SFS) technique, and finally, the Support Vector Machine (SVM) algorithm is used as a binary classifier in two classification levels. The first level classifier is used to categorize the given image as normal or abnormal while the second-level classifier is used for further classifying the abnormal image as either a malignant or benign cancer. The proposed method is studied and investigated in two phases: the training phase and the testing phase, with the MIAS dataset of mammogram images, using 70% and 30% ratios of dataset images for the training and testing sets, respectively. The practical implementation of the proposed method and the graphical user interface (GUI) CAD tool are carried out using MATLAB software. Experimental results of the proposed method have shown that the accuracy of the proposed method reached 100% in classifying images as normal and abnormal mammogram images while the classification accuracy for benign and malignant is equal to 87.1%.
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Zaheer MZ, Lee JH, Mahmood A, Astrid M, Lee SI. Stabilizing Adversarially Learned One-Class Novelty Detection Using Pseudo Anomalies. IEEE TRANSACTIONS ON IMAGE PROCESSING : A PUBLICATION OF THE IEEE SIGNAL PROCESSING SOCIETY 2022; 31:5963-5975. [PMID: 36094978 DOI: 10.1109/tip.2022.3204217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Recently, anomaly scores have been formulated using reconstruction loss of the adversarially learned generators and/or classification loss of discriminators. Unavailability of anomaly examples in the training data makes optimization of such networks challenging. Attributed to the adversarial training, performance of such models fluctuates drastically with each training step, making it difficult to halt the training at an optimal point. In the current study, we propose a robust anomaly detection framework that overcomes such instability by transforming the fundamental role of the discriminator from identifying real vs. fake data to distinguishing good vs. bad quality reconstructions. For this purpose, we propose a method that utilizes the current state as well as an old state of the same generator to create good and bad quality reconstruction examples. The discriminator is trained on these examples to detect the subtle distortions that are often present in the reconstructions of anomalous data. In addition, we propose an efficient generic criterion to stop the training of our model, ensuring elevated performance. Extensive experiments performed on six datasets across multiple domains including image and video based anomaly detection, medical diagnosis, and network security, have demonstrated excellent performance of our approach.
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Sarkar S, Mali K. Breast Cancer Subtypes Classification with Hybrid Machine Learning Model. Methods Inf Med 2022; 61:68-83. [PMID: 36096144 DOI: 10.1055/s-0042-1751043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
Abstract
BACKGROUND Breast cancer is the most prevailing heterogeneous disease among females characterized with distinct molecular subtypes and varied clinicopathological features. With the emergence of various artificial intelligence techniques especially machine learning, the breast cancer research has attained new heights in cancer detection and prognosis. OBJECTIVE Recent development in computer driven diagnostic system has enabled the clinicians to improve the accuracy in detecting various types of breast tumors. Our study is to develop a computer driven diagnostic system which will enable the clinicians to improve the accuracy in detecting various types of breast tumors. METHODS In this article, we proposed a breast cancer classification model based on the hybridization of machine learning approaches for classifying triple-negative breast cancer and non-triple negative breast cancer patients with clinicopathological features collected from multiple tertiary care hospitals/centers. RESULTS The results of genetic algorithm and support vector machine (GA-SVM) hybrid model was compared with classics feature selection SVM hybrid models like support vector machine-recursive feature elimination (SVM-RFE), LASSO-SVM, Grid-SVM, and linear SVM. The classification results obtained from GA-SVM hybrid model outperformed the other compared models when applied on two distinct hospital-based datasets of patients investigated with breast cancer in North West of African subcontinent. To validate the predictive model accuracy, 10-fold cross-validation method was applied on all models with the same multicentered datasets. The model performance was evaluated with well-known metrics like mean squared error, logarithmic loss, F1-score, area under the ROC curve, and the precision-recall curve. CONCLUSION The hybrid machine learning model can be employed for breast cancer subtypes classification that could help the medical practitioners in better treatment planning and disease outcome.
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Affiliation(s)
- Suvobrata Sarkar
- Department of Computer Science and Engineering, Dr. B.C. Roy Engineering College, Durgapur, West Bengal, India
| | - Kalyani Mali
- Department of Computer Science and Engineering, University of Kalyani, Kalyani, West Bengal, India
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Using Transfer Learning to Train a Binary Classifier for Lorrca Ektacytometery Microscopic Images of Sickle Cells and Healthy Red Blood Cells. DATA 2022. [DOI: 10.3390/data7090126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Multiple blood images of stressed and sheared cells, taken by a Lorrca Ektacytometery microscope, needed a classification for biomedical researchers to assess several treatment options for blood-related diseases. The study proposes the design of a model capable of classifying these images, with high accuracy, into healthy Red Blood Cells (RBCs) or Sickle Cells (SCs) images. The performances of five Deep Learning (DL) models with two different optimizers, namely Adam and Stochastic Gradient Descent (SGD), were compared. The first three models consisted of 1, 2 and 3 blocks of CNN, respectively, and the last two models used a transfer learning approach to extract features. The dataset was first augmented, scaled, and then trained to develop models. The performance of the models was evaluated by testing on new images and was illustrated by confusion matrices, performance metrics (accuracy, recall, precision and f1 score), a receiver operating characteristic (ROC) curve and the area under the curve (AUC) value. The first, second and third models with the Adam optimizer could not achieve training, validation or testing accuracy above 50%. However, the second and third models with SGD optimizers showed good loss and accuracy scores during training and validation, but the testing accuracy did not exceed 51%. The fourth and fifth models used VGG16 and Resnet50 pre-trained models for feature extraction, respectively. VGG16 performed better than Resnet50, scoring 98% accuracy and an AUC of 0.98 with both optimizers. The study suggests that transfer learning with the VGG16 model helped to extract features from images for the classification of healthy RBCs and SCs, thus making a significant difference in performance comparing the first, second, third and fifth models.
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din NMU, Dar RA, Rasool M, Assad A. Breast cancer detection using deep learning: Datasets, methods, and challenges ahead. Comput Biol Med 2022; 149:106073. [DOI: 10.1016/j.compbiomed.2022.106073] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2022] [Revised: 08/21/2022] [Accepted: 08/27/2022] [Indexed: 12/22/2022]
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Stress Estimation Model for the Sustainable Health of Cancer Patients. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2022; 2022:3336644. [PMID: 35924111 PMCID: PMC9343204 DOI: 10.1155/2022/3336644] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Revised: 06/25/2022] [Accepted: 07/06/2022] [Indexed: 11/26/2022]
Abstract
Good health is the most important and very necessary characteristic for stress-free, skillful, and hardworking people with a cooperative environment to create a sustainable society. Validating two algorithms, namely, sequential minimal optimization for regression (SMOreg) using vector machine and linear regression (LR) and using their predicted cancer patients' cases, this study presents a patient's stress estimation model (PSEM) to forecast their families' stress for patients' sustainable health and better care with early management by under-study cancer hospitals. The year-wise predictions (1998-2010) by LR and SMOreg are verified by comparing with observed values. The statistical difference between the predictions (2021-2030) by these models is analyzed using a statistical t-test. From the data of 217067 patients, patients' stress-impacting factors are extracted to be used in the proposed PSEM. By considering the total population of under-study areas and getting the predicted population (2021-2030) of each area, the proposed PSEM forecasts overall stress for expected cancer patients (2021-2030). Root mean square error (RMSE) (1076.15.46) for LR is less than RSME for SMOreg (1223.75); hence, LR remains better than SMOreg in forecasting (2011-2020). There is no significant statistical difference between values (2021-2030) predicted by LR and SMOreg (p value = 0.767 > 0.05). The average stress for a family member of a cancer patient is 72.71%. It is concluded that under-study areas face a minimum of 2.18% stress, on average 30.98% stress, and a maximum of 94.81% overall stress because of 179561 expected cancer patients of all major types from 2021 to 2030.
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Dey M, Rana SP, Loretoni R, Duranti M, Sani L, Vispa A, Raspa G, Ghavami M, Dudley S, Tiberi G. Automated breast lesion localisation in microwave imaging employing simplified pulse coupled neural network. PLoS One 2022; 17:e0271377. [PMID: 35862368 PMCID: PMC9302781 DOI: 10.1371/journal.pone.0271377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Accepted: 06/29/2022] [Indexed: 11/18/2022] Open
Abstract
MammoWave is a microwave imaging device for breast lesion detection, employing two antennas which rotate azimuthally (horizontally) around the breast. The antennas operate in the 1-9 GHz band and are set in free space, i.e., pivotally, no matching liquid is required. Microwave images, subsequently obtained through the application of Huygens Principle, are intensity maps, representing the homogeneity of the dielectric properties of the breast tissues under test. In this paper, MammoWave is used to realise tissues dielectric differences and localise lesions by segmenting microwave images adaptively employing pulse coupled neural network (PCNN). Subsequently, a non-parametric thresholding technique is modelled to differentiate between breasts having no radiological finding (NF) or benign (BF) and breasts with malignant finding (MF). Resultant findings verify that automated breast lesion localization with microwave imaging matches the gold standard achieving 81.82% sensitivity in MF detection. The proposed method is tested on microwave images acquired from a feasibility study performed in Foligno Hospital, Italy. This study is based on 61 breasts from 35 patients; performance may vary with larger number of datasets and will be subsequently investigated.
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Affiliation(s)
- Maitreyee Dey
- School of Engineering, London South Bank University, London, United Kingdom
- * E-mail: ,
| | | | | | - Michele Duranti
- Department of Diagnostic Imaging, Perugia Hospital, Perugia, Italy
| | - Lorenzo Sani
- UBT - Umbria Bioengineering Technologies Srl, Perugia, Italy
| | | | - Giovanni Raspa
- UBT - Umbria Bioengineering Technologies Srl, Perugia, Italy
| | - Mohammad Ghavami
- School of Engineering, London South Bank University, London, United Kingdom
| | - Sandra Dudley
- School of Engineering, London South Bank University, London, United Kingdom
| | - Gianluigi Tiberi
- School of Engineering, London South Bank University, London, United Kingdom
- UBT - Umbria Bioengineering Technologies Srl, Perugia, Italy
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Kharya S, Onyema EM, Zafar A, Wajid MA, Afriyie RK, Swarnkar T, Soni S. Weighted Bayesian Belief Network: A Computational Intelligence Approach for Predictive Modeling in Clinical Datasets. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:3813705. [PMID: 35909874 PMCID: PMC9328988 DOI: 10.1155/2022/3813705] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Accepted: 06/29/2022] [Indexed: 12/05/2022]
Abstract
There are growing concerns about the mortality due to Breast cancer many of which often result from delayed detection and treatment. So an effective computational approach is needed to develop a predictive model which will help patients and physicians to manage the situation timely. This study presented a Weighted Bayesian Belief Network (WBBN) modeling for breast cancer prediction using the UCI breast cancer dataset. New automated ranking method was used to assign proper weights to attribute value pair based on their impact on causing the disease. Association between attributes was generated using weighted association rule mining between two attributes, multiattributes, and with class labels to generate rules. Weighted Bayesian confidence and weighted Bayesian lift measures were used to produce strong rules to build the model. To build WBBN, the Open Markov tool was used for structure and parametric learning using generated strong rules. The model was trained using 70% records and tested on 30% records with a threshold value of minimum support = 36% and confidence = 70% which produced results with an accuracy of 97.18%. Experimental results show that WBBN achieved better results in most cases compared to other predictive models. The study would contribute to the fight against breast cancer and the quality of treatment.
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Affiliation(s)
| | - Edeh Michael Onyema
- Department of Mathematics and Computer Science, Coal City University, Enugu, Nigeria
- Adjunct Faculty, Saveetha School of Engineering, Saveetha Institute of Medical and Technical Sciences, Chennai, India
| | - Aasim Zafar
- Department of Computer Science, Aligarh Muslim University, Aligarh 202002, India
| | - Mohd Anas Wajid
- Department of Computer Science, Aligarh Muslim University, Aligarh 202002, India
| | - Rockson Kwasi Afriyie
- Department of Information and Communication Technology, Dr Hilla Limann Technical University, WA, Ghana
| | | | - Sunita Soni
- Bhilai Institute of Technology, Durg, 491001, India
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Hacking SM, Yakirevich E, Wang Y. From Immunohistochemistry to New Digital Ecosystems: A State-of-the-Art Biomarker Review for Precision Breast Cancer Medicine. Cancers (Basel) 2022; 14:3469. [PMID: 35884530 PMCID: PMC9315712 DOI: 10.3390/cancers14143469] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Revised: 07/13/2022] [Accepted: 07/15/2022] [Indexed: 02/04/2023] Open
Abstract
Breast cancers represent complex ecosystem-like networks of malignant cells and their associated microenvironment. Estrogen receptor (ER), progesterone receptor (PR), and human epidermal growth factor receptor 2 (HER2) are biomarkers ubiquitous to clinical practice in evaluating prognosis and predicting response to therapy. Recent feats in breast cancer have led to a new digital era, and advanced clinical trials have resulted in a growing number of personalized therapies with corresponding biomarkers. In this state-of-the-art review, we included the latest 10-year updated recommendations for ER, PR, and HER2, along with the most salient information on tumor-infiltrating lymphocytes (TILs), Ki-67, PD-L1, and several prognostic/predictive biomarkers at genomic, transcriptomic, and proteomic levels recently developed for selection and optimization of breast cancer treatment. Looking forward, the multi-omic landscape of the tumor ecosystem could be integrated with computational findings from whole slide images and radiomics in predictive machine learning (ML) models. These are new digital ecosystems on the road to precision breast cancer medicine.
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Affiliation(s)
| | | | - Yihong Wang
- Department of Pathology and Laboratory Medicine, Warren Alpert Medical School, Brown University, Rhode Island Hospital and Lifespan Medical Center, 593 Eddy Street, Providence, RI 02903, USA; (S.M.H.); (E.Y.)
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