BPG is committed to discovery and dissemination of knowledge
Cited by in F6Publishing
For: Abeles SR, Ly M, Santiago-Rodriguez TM, Pride DT. Effects of Long Term Antibiotic Therapy on Human Oral and Fecal Viromes. PLoS One. 2015;10:e0134941. [PMID: 26309137 DOI: 10.1371/journal.pone.0134941] [Cited by in Crossref: 63] [Cited by in F6Publishing: 57] [Article Influence: 9.0] [Reference Citation Analysis]
Number Citing Articles
1 Guo Y, Huang X, Sun X, Yu Y, Wang Y, Zhang B, Cao J, Wen S, Li Y, Wang X, Cai S, Xia W, Wei F, Duan J, Dong H, Guo S, Zhang F, Zheng D, Sun Z. The Underrated Salivary Virome of Men Who Have Sex With Men Infected With HIV. Front Immunol 2021;12:759253. [PMID: 34925329 DOI: 10.3389/fimmu.2021.759253] [Reference Citation Analysis]
2 Santiago-Rodriguez TM, Ly M, Pride DT, Toranzos GA. Draft Genome Sequence of an Enterococcus faecalis ATCC 19433 Siphovirus Isolated from Raw Domestic Sewage. Genome Announc 2017;5:e01179-16. [PMID: 28104647 DOI: 10.1128/genomeA.01179-16] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
3 Manrique P, Zhu Y, van der Oost J, Herrema H, Nieuwdorp M, de Vos WM, Young M. Gut bacteriophage dynamics during fecal microbial transplantation in subjects with metabolic syndrome. Gut Microbes 2021;13:1-15. [PMID: 33794724 DOI: 10.1080/19490976.2021.1897217] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
4 Salvador R, Zhang A, Horai R, Caspi RR. Microbiota as Drivers and as Therapeutic Targets in Ocular and Tissue Specific Autoimmunity. Front Cell Dev Biol 2020;8:606751. [PMID: 33614621 DOI: 10.3389/fcell.2020.606751] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
5 Ji Y, Liang X, Lu H. Analysis of by high-throughput sequencing: Helicobacter pylori infection and salivary microbiome. BMC Oral Health 2020;20:84. [PMID: 32197614 DOI: 10.1186/s12903-020-01070-1] [Cited by in Crossref: 3] [Cited by in F6Publishing: 5] [Article Influence: 1.5] [Reference Citation Analysis]
6 Zárate S, Taboada B, Yocupicio-monroy M, Arias CF. Human Virome. Archives of Medical Research 2017;48:701-16. [DOI: 10.1016/j.arcmed.2018.01.005] [Cited by in Crossref: 24] [Cited by in F6Publishing: 16] [Article Influence: 4.8] [Reference Citation Analysis]
7 Pérez-Brocal V, Moya A. The analysis of the oral DNA virome reveals which viruses are widespread and rare among healthy young adults in Valencia (Spain). PLoS One 2018;13:e0191867. [PMID: 29420668 DOI: 10.1371/journal.pone.0191867] [Cited by in Crossref: 16] [Cited by in F6Publishing: 13] [Article Influence: 4.0] [Reference Citation Analysis]
8 Colombo S, Arioli S, Neri E, Della Scala G, Gargari G, Mora D. Viromes As Genetic Reservoir for the Microbial Communities in Aquatic Environments: A Focus on Antimicrobial-Resistance Genes. Front Microbiol 2017;8:1095. [PMID: 28663745 DOI: 10.3389/fmicb.2017.01095] [Cited by in Crossref: 18] [Cited by in F6Publishing: 17] [Article Influence: 3.6] [Reference Citation Analysis]
9 Isaacs SR, Foskett DB, Maxwell AJ, Ward EJ, Faulkner CL, Luo JYX, Rawlinson WD, Craig ME, Kim KW. Viruses and Type 1 Diabetes: From Enteroviruses to the Virome. Microorganisms 2021;9:1519. [PMID: 34361954 DOI: 10.3390/microorganisms9071519] [Reference Citation Analysis]
10 Szafrański SP, Slots J, Stiesch M. The human oral phageome. Periodontol 2000 2021;86:79-96. [PMID: 33690937 DOI: 10.1111/prd.12363] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 3.0] [Reference Citation Analysis]
11 Armitage GC. A brief history of periodontics in the United States of America: Pioneers and thought-leaders of the past, and current challenges. Periodontol 2000 2020;82:12-25. [PMID: 31850629 DOI: 10.1111/prd.12303] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 1.3] [Reference Citation Analysis]
12 Zaura E, Brandt BW, Teixeira de Mattos MJ, Buijs MJ, Caspers MP, Rashid MU, Weintraub A, Nord CE, Savell A, Hu Y, Coates AR, Hubank M, Spratt DA, Wilson M, Keijser BJ, Crielaard W. Same Exposure but Two Radically Different Responses to Antibiotics: Resilience of the Salivary Microbiome vs Long-Term Microbial Shifts in Feces. mBio. 2015;6:e01693-e01615. [PMID: 26556275 DOI: 10.1128/mbio.01693-15] [Cited by in Crossref: 205] [Cited by in F6Publishing: 125] [Article Influence: 29.3] [Reference Citation Analysis]
13 Segal JP, Mullish BH, Quraishi MN, Iqbal T, Marchesi JR, Sokol H. Mechanisms underpinning the efficacy of faecal microbiota transplantation in treating gastrointestinal disease. Therap Adv Gastroenterol 2020;13:1756284820946904. [PMID: 32952613 DOI: 10.1177/1756284820946904] [Cited by in Crossref: 5] [Cited by in F6Publishing: 6] [Article Influence: 2.5] [Reference Citation Analysis]
14 Taylor VL, Fitzpatrick AD, Islam Z, Maxwell KL. The Diverse Impacts of Phage Morons on Bacterial Fitness and Virulence. Elsevier; 2019. pp. 1-31. [DOI: 10.1016/bs.aivir.2018.08.001] [Cited by in Crossref: 40] [Cited by in F6Publishing: 32] [Article Influence: 13.3] [Reference Citation Analysis]
15 Schulfer A, Santiago-Rodriguez TM, Ly M, Borin JM, Chopyk J, Blaser MJ, Pride DT. Fecal Viral Community Responses to High-Fat Diet in Mice. mSphere 2020;5:e00833-19. [PMID: 32102942 DOI: 10.1128/mSphere.00833-19] [Cited by in Crossref: 6] [Cited by in F6Publishing: 7] [Article Influence: 3.0] [Reference Citation Analysis]
16 Kullberg RFJ, Hugenholtz F, Brands X, Kinsella CM, Peters-Sengers H, Butler JM, Deijs M, Klein M, Faber DR, Scicluna BP, Van der Poll T, Van der Hoek L, Wiersinga WJ, Haak BW. Rectal bacteriome and virome signatures and clinical outcomes in community-acquired pneumonia: An exploratory study. EClinicalMedicine 2021;39:101074. [PMID: 34611613 DOI: 10.1016/j.eclinm.2021.101074] [Reference Citation Analysis]
17 Balcázar JL. Implications of bacteriophages on the acquisition and spread of antibiotic resistance in the environment. Int Microbiol 2020;23:475-9. [PMID: 32002743 DOI: 10.1007/s10123-020-00121-5] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 3.5] [Reference Citation Analysis]
18 Mohan Raj JR, Karunasagar I. Phages amid antimicrobial resistance. Critical Reviews in Microbiology 2019;45:701-11. [DOI: 10.1080/1040841x.2019.1691973] [Cited by in Crossref: 5] [Cited by in F6Publishing: 1] [Article Influence: 1.7] [Reference Citation Analysis]
19 Campbell DE, Ly LK, Ridlon JM, Hsiao A, Whitaker RJ, Degnan PH. Infection with Bacteroides Phage BV01 Alters the Host Transcriptome and Bile Acid Metabolism in a Common Human Gut Microbe. Cell Rep 2020;32:108142. [PMID: 32937127 DOI: 10.1016/j.celrep.2020.108142] [Cited by in Crossref: 5] [Cited by in F6Publishing: 3] [Article Influence: 5.0] [Reference Citation Analysis]
20 Torres-Barceló C. The disparate effects of bacteriophages on antibiotic-resistant bacteria. Emerg Microbes Infect 2018;7:168. [PMID: 30302018 DOI: 10.1038/s41426-018-0169-z] [Cited by in Crossref: 51] [Cited by in F6Publishing: 45] [Article Influence: 12.8] [Reference Citation Analysis]
21 Humphrey S, San Millán Á, Toll-Riera M, Connolly J, Flor-Duro A, Chen J, Ubeda C, MacLean RC, Penadés JR. Staphylococcal phages and pathogenicity islands drive plasmid evolution. Nat Commun 2021;12:5845. [PMID: 34615859 DOI: 10.1038/s41467-021-26101-5] [Reference Citation Analysis]
22 Baker JL, Bor B, Agnello M, Shi W, He X. Ecology of the Oral Microbiome: Beyond Bacteria. Trends Microbiol 2017;25:362-74. [PMID: 28089325 DOI: 10.1016/j.tim.2016.12.012] [Cited by in Crossref: 84] [Cited by in F6Publishing: 81] [Article Influence: 16.8] [Reference Citation Analysis]
23 Colombo S, Arioli S, Gargari G, Neri E, Della Scala G, Mora D. Characterization of airborne viromes in cheese production plants. J Appl Microbiol 2018;125:1444-54. [DOI: 10.1111/jam.14046] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 2.0] [Reference Citation Analysis]
24 Townsend EM, Kelly L, Muscatt G, Box JD, Hargraves N, Lilley D, Jameson E. The Human Gut Phageome: Origins and Roles in the Human Gut Microbiome. Front Cell Infect Microbiol 2021;11:643214. [PMID: 34150671 DOI: 10.3389/fcimb.2021.643214] [Reference Citation Analysis]
25 Garretto A, Miller-Ensminger T, Wolfe AJ, Putonti C. Bacteriophages of the lower urinary tract. Nat Rev Urol 2019;16:422-32. [PMID: 31073244 DOI: 10.1038/s41585-019-0192-4] [Cited by in Crossref: 20] [Cited by in F6Publishing: 17] [Article Influence: 10.0] [Reference Citation Analysis]
26 Carding SR, Davis N, Hoyles L. Review article: the human intestinal virome in health and disease. Aliment Pharmacol Ther. 2017;46:800-815. [PMID: 28869283 DOI: 10.1111/apt.14280] [Cited by in Crossref: 102] [Cited by in F6Publishing: 88] [Article Influence: 20.4] [Reference Citation Analysis]
27 Beller L, Matthijnssens J. What is (not) known about the dynamics of the human gut virome in health and disease. Current Opinion in Virology 2019;37:52-7. [DOI: 10.1016/j.coviro.2019.05.013] [Cited by in Crossref: 24] [Cited by in F6Publishing: 17] [Article Influence: 8.0] [Reference Citation Analysis]
28 Vogtmann E, Hua X, Zhou L, Wan Y, Suman S, Zhu B, Dagnall CL, Hutchinson A, Jones K, Hicks BD, Sinha R, Shi J, Abnet CC. Temporal Variability of Oral Microbiota over 10 Months and the Implications for Future Epidemiologic Studies. Cancer Epidemiol Biomarkers Prev 2018;27:594-600. [PMID: 29475969 DOI: 10.1158/1055-9965.EPI-17-1004] [Cited by in Crossref: 10] [Cited by in F6Publishing: 8] [Article Influence: 2.5] [Reference Citation Analysis]
29 Keen EC, Dantas G. Close Encounters of Three Kinds: Bacteriophages, Commensal Bacteria, and Host Immunity. Trends Microbiol 2018;26:943-54. [PMID: 29909042 DOI: 10.1016/j.tim.2018.05.009] [Cited by in Crossref: 41] [Cited by in F6Publishing: 35] [Article Influence: 10.3] [Reference Citation Analysis]
30 Ferrer M, Méndez-García C, Rojo D, Barbas C, Moya A. Antibiotic use and microbiome function. Biochem Pharmacol 2017;134:114-26. [PMID: 27641814 DOI: 10.1016/j.bcp.2016.09.007] [Cited by in Crossref: 106] [Cited by in F6Publishing: 95] [Article Influence: 17.7] [Reference Citation Analysis]
31 Kigerl KA, Zane K, Adams K, Sullivan MB, Popovich PG. The spinal cord-gut-immune axis as a master regulator of health and neurological function after spinal cord injury. Exp Neurol. 2020;323:113085. [PMID: 31654639 DOI: 10.1016/j.expneurol.2019.113085] [Cited by in Crossref: 16] [Cited by in F6Publishing: 14] [Article Influence: 5.3] [Reference Citation Analysis]
32 Ly M, Jones MB, Abeles SR, Santiago-Rodriguez TM, Gao J, Chan IC, Ghose C, Pride DT. Transmission of viruses via our microbiomes. Microbiome 2016;4:64. [PMID: 27912785 DOI: 10.1186/s40168-016-0212-z] [Cited by in Crossref: 28] [Cited by in F6Publishing: 28] [Article Influence: 4.7] [Reference Citation Analysis]
33 Pennycook JH, Scanlan PD. Ecological and evolutionary responses to antibiotic treatment in the human gut microbiota. FEMS Microbiol Rev 2021:fuab018. [PMID: 33822937 DOI: 10.1093/femsre/fuab018] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
34 Santiago-Rodriguez TM, Fornaciari G, Luciani S, Dowd SE, Toranzos GA, Marota I, Cano RJ. Natural mummification of the human gut preserves bacteriophage DNA. FEMS Microbiol Lett 2016;363:fnv219. [PMID: 26564967 DOI: 10.1093/femsle/fnv219] [Cited by in Crossref: 17] [Cited by in F6Publishing: 10] [Article Influence: 2.4] [Reference Citation Analysis]
35 Manrique P, Dills M, Young MJ. The Human Gut Phage Community and Its Implications for Health and Disease. Viruses 2017;9:E141. [PMID: 28594392 DOI: 10.3390/v9060141] [Cited by in Crossref: 111] [Cited by in F6Publishing: 84] [Article Influence: 22.2] [Reference Citation Analysis]
36 Enault F, Briet A, Bouteille L, Roux S, Sullivan MB, Petit MA. Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses. ISME J 2017;11:237-47. [PMID: 27326545 DOI: 10.1038/ismej.2016.90] [Cited by in Crossref: 163] [Cited by in F6Publishing: 135] [Article Influence: 27.2] [Reference Citation Analysis]
37 Abbas AA, Taylor LJ, Dothard MI, Leiby JS, Fitzgerald AS, Khatib LA, Collman RG, Bushman FD. Redondoviridae, a Family of Small, Circular DNA Viruses of the Human Oro-Respiratory Tract Associated with Periodontitis and Critical Illness. Cell Host Microbe 2019;25:719-729.e4. [PMID: 31071295 DOI: 10.1016/j.chom.2019.04.001] [Cited by in Crossref: 26] [Cited by in F6Publishing: 24] [Article Influence: 8.7] [Reference Citation Analysis]
38 Broecker F, Russo G, Klumpp J, Moelling K. Stable core virome despite variable microbiome after fecal transfer. Gut Microbes 2017;8:214-20. [PMID: 27935413 DOI: 10.1080/19490976.2016.1265196] [Cited by in Crossref: 35] [Cited by in F6Publishing: 34] [Article Influence: 5.8] [Reference Citation Analysis]
39 da Costa AC, Moron AF, Forney LJ, Linhares IM, Sabino E, Costa SF, Mendes-Correa MC, Witkin SS. Identification of bacteriophages in the vagina of pregnant women: a descriptive study. BJOG 2021;128:976-82. [PMID: 32970908 DOI: 10.1111/1471-0528.16528] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
40 Chen J, Ding WJ. Mechanism of oral virome imbalance in recurrent aphthous ulcer. Shijie Huaren Xiaohua Zazhi 2016; 24(17): 2642-2646 [DOI: 10.11569/wcjd.v24.i17.2642] [Cited by in CrossRef: 1] [Article Influence: 0.2] [Reference Citation Analysis]
41 Willmann M, Peter S. Translational metagenomics and the human resistome: confronting the menace of the new millennium. J Mol Med (Berl) 2017;95:41-51. [PMID: 27766372 DOI: 10.1007/s00109-016-1478-0] [Cited by in Crossref: 16] [Cited by in F6Publishing: 14] [Article Influence: 2.7] [Reference Citation Analysis]
42 Emlet C, Ruffin M, Lamendella R. Enteric Virome and Carcinogenesis in the Gut. Dig Dis Sci 2020;65:852-64. [PMID: 32060814 DOI: 10.1007/s10620-020-06126-4] [Cited by in Crossref: 9] [Cited by in F6Publishing: 9] [Article Influence: 4.5] [Reference Citation Analysis]
43 Parras-Moltó M, López-Bueno A. Methods for Enrichment and Sequencing of Oral Viral Assemblages: Saliva, Oral Mucosa, and Dental Plaque Viromes. Methods Mol Biol 2018;1838:143-61. [PMID: 30128995 DOI: 10.1007/978-1-4939-8682-8_11] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
44 Pratama AA, Terpstra J, de Oliveria ALM, Salles JF. The Role of Rhizosphere Bacteriophages in Plant Health. Trends in Microbiology 2020;28:709-18. [DOI: 10.1016/j.tim.2020.04.005] [Cited by in Crossref: 10] [Cited by in F6Publishing: 5] [Article Influence: 5.0] [Reference Citation Analysis]
45 Hannigan GD, Duhaime MB, Koutra D, Schloss PD. Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome. PLoS Comput Biol 2018;14:e1006099. [PMID: 29668682 DOI: 10.1371/journal.pcbi.1006099] [Cited by in Crossref: 23] [Cited by in F6Publishing: 17] [Article Influence: 5.8] [Reference Citation Analysis]
46 Liang G, Bushman FD. The human virome: assembly, composition and host interactions. Nat Rev Microbiol 2021;19:514-27. [PMID: 33785903 DOI: 10.1038/s41579-021-00536-5] [Cited by in Crossref: 6] [Cited by in F6Publishing: 11] [Article Influence: 6.0] [Reference Citation Analysis]
47 Adu-Oppong B, Gasparrini AJ, Dantas G. Genomic and functional techniques to mine the microbiome for novel antimicrobials and antimicrobial resistance genes. Ann N Y Acad Sci 2017;1388:42-58. [PMID: 27768825 DOI: 10.1111/nyas.13257] [Cited by in Crossref: 31] [Cited by in F6Publishing: 21] [Article Influence: 5.2] [Reference Citation Analysis]
48 Mukhopadhya I, Segal JP, Carding SR, Hart AL, Hold GL. The gut virome: the 'missing link' between gut bacteria and host immunity? Therap Adv Gastroenterol 2019;12:1756284819836620. [PMID: 30936943 DOI: 10.1177/1756284819836620] [Cited by in Crossref: 55] [Cited by in F6Publishing: 50] [Article Influence: 18.3] [Reference Citation Analysis]
49 Carroll-Portillo A, Lin HC. Bacteriophage and the Innate Immune System: Access and Signaling. Microorganisms 2019;7:E625. [PMID: 31795262 DOI: 10.3390/microorganisms7120625] [Cited by in Crossref: 13] [Cited by in F6Publishing: 13] [Article Influence: 4.3] [Reference Citation Analysis]
50 Santiago-Rodriguez TM, Hollister EB. Potential Applications of Human Viral Metagenomics and Reference Materials: Considerations for Current and Future Viruses. Appl Environ Microbiol 2020;86:e01794-20. [PMID: 32917759 DOI: 10.1128/AEM.01794-20] [Cited by in Crossref: 1] [Article Influence: 0.5] [Reference Citation Analysis]
51 Kim Y, Van Bonn W, Aw TG, Rose JB. Aquarium Viromes: Viromes of Human-Managed Aquatic Systems. Front Microbiol 2017;8:1231. [PMID: 28713358 DOI: 10.3389/fmicb.2017.01231] [Cited by in Crossref: 15] [Cited by in F6Publishing: 14] [Article Influence: 3.0] [Reference Citation Analysis]
52 Edlund A, Santiago-Rodriguez TM, Boehm TK, Pride DT. Bacteriophage and their potential roles in the human oral cavity. J Oral Microbiol 2015;7:27423. [PMID: 25861745 DOI: 10.3402/jom.v7.27423] [Cited by in Crossref: 66] [Cited by in F6Publishing: 51] [Article Influence: 9.4] [Reference Citation Analysis]
53 Kim D, Hofstaedter CE, Zhao C, Mattei L, Tanes C, Clarke E, Lauder A, Sherrill-Mix S, Chehoud C, Kelsen J, Conrad M, Collman RG, Baldassano R, Bushman FD, Bittinger K. Optimizing methods and dodging pitfalls in microbiome research. Microbiome 2017;5:52. [PMID: 28476139 DOI: 10.1186/s40168-017-0267-5] [Cited by in Crossref: 235] [Cited by in F6Publishing: 218] [Article Influence: 47.0] [Reference Citation Analysis]
54 Hannigan GD, Duhaime MB, Ruffin MT 4th, Koumpouras CC, Schloss PD. Diagnostic Potential and Interactive Dynamics of the Colorectal Cancer Virome. mBio 2018;9:e02248-18. [PMID: 30459201 DOI: 10.1128/mBio.02248-18] [Cited by in Crossref: 59] [Cited by in F6Publishing: 41] [Article Influence: 14.8] [Reference Citation Analysis]
55 Zimmermann P, Curtis N. The effect of antibiotics on the composition of the intestinal microbiota - a systematic review. J Infect 2019;79:471-89. [PMID: 31629863 DOI: 10.1016/j.jinf.2019.10.008] [Cited by in Crossref: 49] [Cited by in F6Publishing: 43] [Article Influence: 16.3] [Reference Citation Analysis]
56 Pannaraj PS, Ly M, Cerini C, Saavedra M, Aldrovandi GM, Saboory AA, Johnson KM, Pride DT. Shared and Distinct Features of Human Milk and Infant Stool Viromes. Front Microbiol 2018;9:1162. [PMID: 29910789 DOI: 10.3389/fmicb.2018.01162] [Cited by in Crossref: 44] [Cited by in F6Publishing: 41] [Article Influence: 11.0] [Reference Citation Analysis]
57 Ghose C, Ly M, Schwanemann LK, Shin JH, Atab K, Barr JJ, Little M, Schooley RT, Chopyk J, Pride DT. The Virome of Cerebrospinal Fluid: Viruses Where We Once Thought There Were None. Front Microbiol 2019;10:2061. [PMID: 31555247 DOI: 10.3389/fmicb.2019.02061] [Cited by in Crossref: 21] [Cited by in F6Publishing: 14] [Article Influence: 7.0] [Reference Citation Analysis]
58 Fernández L, Duarte AC, Rodríguez A, García P. The relationship between the phageome and human health: are bacteriophages beneficial or harmful microbes? Benef Microbes 2021;12:107-20. [PMID: 33789552 DOI: 10.3920/BM2020.0132] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]