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For: Salzberg SL, Breitwieser FP, Kumar A, Hao H, Burger P, Rodriguez FJ, Lim M, Quiñones-Hinojosa A, Gallia GL, Tornheim JA, Melia MT, Sears CL, Pardo CA. Next-generation sequencing in neuropathologic diagnosis of infections of the nervous system. Neurol Neuroimmunol Neuroinflamm 2016;3:e251. [PMID: 27340685 DOI: 10.1212/NXI.0000000000000251] [Cited by in Crossref: 88] [Cited by in F6Publishing: 52] [Article Influence: 14.7] [Reference Citation Analysis]
Number Citing Articles
1 Yin H, Xu D, Wang D. Diagnostic value of next-generation sequencing to detect periprosthetic joint infection. BMC Musculoskelet Disord 2021;22:252. [PMID: 33676477 DOI: 10.1186/s12891-021-04116-9] [Reference Citation Analysis]
2 Miller S, Naccache SN, Samayoa E, Messacar K, Arevalo S, Federman S, Stryke D, Pham E, Fung B, Bolosky WJ, Ingebrigtsen D, Lorizio W, Paff SM, Leake JA, Pesano R, DeBiasi R, Dominguez S, Chiu CY. Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid. Genome Res 2019;29:831-42. [PMID: 30992304 DOI: 10.1101/gr.238170.118] [Cited by in Crossref: 105] [Cited by in F6Publishing: 104] [Article Influence: 35.0] [Reference Citation Analysis]
3 Vidal S, Brandt BW, Dettwiler M, Abril C, Bressan J, Greub G, Frey CF, Perreten V, Rodriguez-Campos S. Limited added value of fungal ITS amplicon sequencing in the study of bovine abortion. Heliyon 2018;4:e00915. [PMID: 30426108 DOI: 10.1016/j.heliyon.2018.e00915] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.5] [Reference Citation Analysis]
4 Xia H, Guan Y, Zaongo SD, Xia H, Wang Z, Yan Z, Ma P. Progressive Multifocal Leukoencephalopathy Diagnosed by Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid in an HIV Patient. Front Neurol 2019;10:1202. [PMID: 31824396 DOI: 10.3389/fneur.2019.01202] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 1.3] [Reference Citation Analysis]
5 Xie G, Zhao B, Wang X, Bao L, Xu Y, Ren X, Ji J, He T, Zhao H. Exploring the Clinical Utility of Metagenomic Next-Generation Sequencing in the Diagnosis of Pulmonary Infection. Infect Dis Ther 2021;10:1419-35. [PMID: 34117999 DOI: 10.1007/s40121-021-00476-w] [Reference Citation Analysis]
6 Haston JC, Rostad CA, Jerris RC, Milla SS, McCracken C, Pratt C, Wiley M, Prieto K, Palacios G, Shane AL, McElroy AK. Prospective Cohort Study of Next-Generation Sequencing as a Diagnostic Modality for Unexplained Encephalitis in Children. J Pediatric Infect Dis Soc 2020;9:326-33. [PMID: 31107955 DOI: 10.1093/jpids/piz032] [Cited by in Crossref: 12] [Cited by in F6Publishing: 9] [Article Influence: 6.0] [Reference Citation Analysis]
7 Wu X, Yan G, Han S, Ye Y, Cheng X, Gong H, Yu H. Diagnosing Balamuthia mandrillaris encephalitis via next-generation sequencing in a 13-year-old girl. Emerg Microbes Infect 2020;9:1379-87. [PMID: 32552393 DOI: 10.1080/22221751.2020.1775130] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
8 Xue H, Wang XH, Shi L, Wei Q, Zhang YM, Yang HF. Dental focal infection-induced ventricular and spinal canal empyema: A case report. World J Clin Cases 2020; 8(14): 3114-3121 [PMID: 32775394 DOI: 10.12998/wjcc.v8.i14.3114] [Cited by in CrossRef: 1] [Article Influence: 0.5] [Reference Citation Analysis]
9 Emery DC, Shoemark DK, Batstone TE, Waterfall CM, Coghill JA, Cerajewska TL, Davies M, West NX, Allen SJ. 16S rRNA Next Generation Sequencing Analysis Shows Bacteria in Alzheimer's Post-Mortem Brain. Front Aging Neurosci. 2017;9:195. [PMID: 28676754 DOI: 10.3389/fnagi.2017.00195] [Cited by in Crossref: 120] [Cited by in F6Publishing: 113] [Article Influence: 24.0] [Reference Citation Analysis]
10 Lu J, Salzberg SL. Removing contaminants from databases of draft genomes. PLoS Comput Biol 2018;14:e1006277. [PMID: 29939994 DOI: 10.1371/journal.pcbi.1006277] [Cited by in Crossref: 31] [Cited by in F6Publishing: 21] [Article Influence: 7.8] [Reference Citation Analysis]
11 Kanjilal S, Cho TA, Piantadosi A. Diagnostic Testing in Central Nervous System Infection. Semin Neurol 2019;39:297-311. [PMID: 31378866 DOI: 10.1055/s-0039-1688441] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
12 Guo Y, Yang Y, Xu M, Shi G, Zhou J, Zhang J, Li H. Trends and Developments in the Detection of Pathogens in Central Nervous System Infections: A Bibliometric Study. Front Cell Infect Microbiol 2022;12:856845. [DOI: 10.3389/fcimb.2022.856845] [Reference Citation Analysis]
13 Zheng Y, Qiu X, Wang T, Zhang J. The Diagnostic Value of Metagenomic Next-Generation Sequencing in Lower Respiratory Tract Infection. Front Cell Infect Microbiol 2021;11:694756. [PMID: 34568089 DOI: 10.3389/fcimb.2021.694756] [Reference Citation Analysis]
14 Zhang C, Hu T, Xiu L, Li Y, Peng J. Use of Ultra-Deep Sequencing in a Patient with Tuberculous Coxitis Shows Its Limitations in Extrapulmonary Tuberculosis Diagnostics: A Case Report. Infect Drug Resist 2019;12:3739-43. [PMID: 31819556 DOI: 10.2147/IDR.S226518] [Cited by in Crossref: 1] [Article Influence: 0.3] [Reference Citation Analysis]
15 Oechslin CP, Lenz N, Liechti N, Ryter S, Agyeman P, Bruggmann R, Leib SL, Beuret CM. Limited Correlation of Shotgun Metagenomics Following Host Depletion and Routine Diagnostics for Viruses and Bacteria in Low Concentrated Surrogate and Clinical Samples. Front Cell Infect Microbiol 2018;8:375. [PMID: 30406048 DOI: 10.3389/fcimb.2018.00375] [Cited by in Crossref: 17] [Cited by in F6Publishing: 19] [Article Influence: 4.3] [Reference Citation Analysis]
16 Wang S, Ai J, Cui P, Zhu Y, Wu H, Zhang W. Diagnostic value and clinical application of next-generation sequencing for infections in immunosuppressed patients with corticosteroid therapy. Ann Transl Med 2020;8:227. [PMID: 32309374 DOI: 10.21037/atm.2020.01.30] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 2.5] [Reference Citation Analysis]
17 Ju C, Lian Q, Guan W, Chen A, Zhang J, Xu X, Chen R, Li S, He J. Metagenomic Next-Generation Sequencing for Diagnosing Infections in Lung Transplant Recipients: A Retrospective Study. Transpl Int 2022;36:10265. [DOI: 10.3389/ti.2022.10265] [Reference Citation Analysis]
18 Heintz-Buschart A, Yusuf D, Kaysen A, Etheridge A, Fritz JV, May P, de Beaufort C, Upadhyaya BB, Ghosal A, Galas DJ, Wilmes P. Small RNA profiling of low biomass samples: identification and removal of contaminants. BMC Biol 2018;16:52. [PMID: 29759067 DOI: 10.1186/s12915-018-0522-7] [Cited by in Crossref: 37] [Cited by in F6Publishing: 31] [Article Influence: 9.3] [Reference Citation Analysis]
19 Dulanto Chiang A, Dekker JP. From the Pipeline to the Bedside: Advances and Challenges in Clinical Metagenomics. J Infect Dis 2020;221:S331-40. [PMID: 31538184 DOI: 10.1093/infdis/jiz151] [Cited by in Crossref: 17] [Cited by in F6Publishing: 17] [Article Influence: 17.0] [Reference Citation Analysis]
20 Bradshaw MJ, Pawate S, Koth LL, Cho TA, Gelfand JM. Neurosarcoidosis: Pathophysiology, Diagnosis, and Treatment. Neurol Neuroimmunol Neuroinflamm 2021;8:e1084. [PMID: 34607912 DOI: 10.1212/NXI.0000000000001084] [Reference Citation Analysis]
21 Wilson MR, O'Donovan BD, Gelfand JM, Sample HA, Chow FC, Betjemann JP, Shah MP, Richie MB, Gorman MP, Hajj-Ali RA, Calabrese LH, Zorn KC, Chow ED, Greenlee JE, Blum JH, Green G, Khan LM, Banerji D, Langelier C, Bryson-Cahn C, Harrington W, Lingappa JR, Shanbhag NM, Green AJ, Brew BJ, Soldatos A, Strnad L, Doernberg SB, Jay CA, Douglas V, Josephson SA, DeRisi JL. Chronic Meningitis Investigated via Metagenomic Next-Generation Sequencing. JAMA Neurol 2018;75:947-55. [PMID: 29710329 DOI: 10.1001/jamaneurol.2018.0463] [Cited by in Crossref: 108] [Cited by in F6Publishing: 94] [Article Influence: 36.0] [Reference Citation Analysis]
22 Breitwieser FP, Baker DN, Salzberg SL. KrakenUniq: confident and fast metagenomics classification using unique k-mer counts. Genome Biol 2018;19:198. [PMID: 30445993 DOI: 10.1186/s13059-018-1568-0] [Cited by in Crossref: 108] [Cited by in F6Publishing: 72] [Article Influence: 27.0] [Reference Citation Analysis]
23 Vidal S, Kegler K, Posthaus H, Perreten V, Rodriguez-Campos S. Amplicon sequencing of bacterial microbiota in abortion material from cattle. Vet Res 2017;48:64. [PMID: 29017611 DOI: 10.1186/s13567-017-0470-1] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 1.6] [Reference Citation Analysis]
24 Li Z, Breitwieser FP, Lu J, Jun AS, Asnaghi L, Salzberg SL, Eberhart CG. Identifying Corneal Infections in Formalin-Fixed Specimens Using Next Generation Sequencing. Invest Ophthalmol Vis Sci. 2018;59:280-288. [PMID: 29340642 DOI: 10.1167/iovs.17-21617] [Cited by in Crossref: 22] [Cited by in F6Publishing: 19] [Article Influence: 5.5] [Reference Citation Analysis]
25 Jia X, Hu L, Wu M, Ling Y, Wang W, Lu H, Yuan Z, Yi Z, Zhang X. A streamlined clinical metagenomic sequencing protocol for rapid pathogen identification. Sci Rep 2021;11:4405. [PMID: 33623127 DOI: 10.1038/s41598-021-83812-x] [Reference Citation Analysis]
26 Venkatesan A. Encephalitis and Brain Abscess. Continuum (Minneap Minn) 2021;27:855-86. [PMID: 34623096 DOI: 10.1212/CON.0000000000001006] [Reference Citation Analysis]
27 Song Y, Liu X, de Hoog GS, Li R. Disseminated Cryptococcosis Presenting as Cellulitis Diagnosed by Laser Capture Microdissection: A Case Report and Literature Review. Mycopathologia 2021;186:423-33. [PMID: 33813690 DOI: 10.1007/s11046-021-00543-3] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
28 Qian M, Zhan Y, Wu D, Ji L, Chen H, Cheng Y. Clinical standardization of metagenomic next generation sequencing (mNGS) in the pathogen diagnosis. Clinical and Translational Dis 2021;1. [DOI: 10.1002/ctd2.12] [Reference Citation Analysis]
29 Forbes JD, Knox NC, Peterson CL, Reimer AR. Highlighting Clinical Metagenomics for Enhanced Diagnostic Decision-making: A Step Towards Wider Implementation. Comput Struct Biotechnol J 2018;16:108-20. [PMID: 30026887 DOI: 10.1016/j.csbj.2018.02.006] [Cited by in Crossref: 41] [Cited by in F6Publishing: 29] [Article Influence: 10.3] [Reference Citation Analysis]
30 Zanella MC, Lenggenhager L, Schrenzel J, Cordey S, Kaiser L. High-throughput sequencing for the aetiologic identification of viral encephalitis, meningoencephalitis, and meningitis. A narrative review and clinical appraisal. Clin Microbiol Infect 2019;25:422-30. [PMID: 30641229 DOI: 10.1016/j.cmi.2018.12.022] [Cited by in Crossref: 9] [Cited by in F6Publishing: 10] [Article Influence: 3.0] [Reference Citation Analysis]
31 Yan Q, Wi YM, Thoendel MJ, Raval YS, Greenwood-Quaintance KE, Abdel MP, Jeraldo PR, Chia N, Patel R. Evaluation of the CosmosID Bioinformatics Platform for Prosthetic Joint-Associated Sonicate Fluid Shotgun Metagenomic Data Analysis. J Clin Microbiol 2019;57:e01182-18. [PMID: 30429253 DOI: 10.1128/JCM.01182-18] [Cited by in Crossref: 13] [Cited by in F6Publishing: 11] [Article Influence: 4.3] [Reference Citation Analysis]
32 Ivy MI, Thoendel MJ, Jeraldo PR, Greenwood-Quaintance KE, Hanssen AD, Abdel MP, Chia N, Yao JZ, Tande AJ, Mandrekar JN, Patel R. Direct Detection and Identification of Prosthetic Joint Infection Pathogens in Synovial Fluid by Metagenomic Shotgun Sequencing. J Clin Microbiol 2018;56:e00402-18. [PMID: 29848568 DOI: 10.1128/JCM.00402-18] [Cited by in Crossref: 56] [Cited by in F6Publishing: 35] [Article Influence: 14.0] [Reference Citation Analysis]
33 Breitwieser FP, Lu J, Salzberg SL. A review of methods and databases for metagenomic classification and assembly. Brief Bioinform 2019;20:1125-36. [PMID: 29028872 DOI: 10.1093/bib/bbx120] [Cited by in Crossref: 155] [Cited by in F6Publishing: 116] [Article Influence: 77.5] [Reference Citation Analysis]
34 Wang Q, Wu B, Yang D, Yang C, Jin Z, Cao J, Feng J. Optimal specimen type for accurate diagnosis of infectious peripheral pulmonary lesions by mNGS. BMC Pulm Med 2020;20:268. [PMID: 33059646 DOI: 10.1186/s12890-020-01298-1] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 0.5] [Reference Citation Analysis]
35 Kandathil AJ, Breitwieser FP, Sachithanandham J, Robinson M, Mehta SH, Timp W, Salzberg SL, Thomas DL, Balagopal A. Presence of Human Hepegivirus-1 in a Cohort of People Who Inject Drugs. Ann Intern Med 2017;167:1-7. [PMID: 28586923 DOI: 10.7326/M17-0085] [Cited by in Crossref: 19] [Cited by in F6Publishing: 11] [Article Influence: 3.8] [Reference Citation Analysis]
36 Simner PJ, Miller S, Carroll KC. Understanding the Promises and Hurdles of Metagenomic Next-Generation Sequencing as a Diagnostic Tool for Infectious Diseases. Clin Infect Dis 2018;66:778-88. [PMID: 29040428 DOI: 10.1093/cid/cix881] [Cited by in Crossref: 143] [Cited by in F6Publishing: 134] [Article Influence: 47.7] [Reference Citation Analysis]
37 Wang S, Chen Y, Wang D, Wu Y, Zhao D, Zhang J, Xie H, Gong Y, Sun R, Nie X, Jiang H, Zhang J, Li W, Liu G, Li X, Huang K, Huang Y, Li Y, Guan H, Pan S, Hu Y. The Feasibility of Metagenomic Next-Generation Sequencing to Identify Pathogens Causing Tuberculous Meningitis in Cerebrospinal Fluid. Front Microbiol 2019;10:1993. [PMID: 31551954 DOI: 10.3389/fmicb.2019.01993] [Cited by in Crossref: 21] [Cited by in F6Publishing: 20] [Article Influence: 7.0] [Reference Citation Analysis]
38 Piantadosi A, Mukerji SS, Chitneni P, Cho TA, Cosimi LA, Hung DT, Goldberg MB, Sabeti PC, Kuritzkes DR, Grad YH. Metagenomic Sequencing of an Echovirus 30 Genome From Cerebrospinal Fluid of a Patient With Aseptic Meningitis and Orchitis. Open Forum Infect Dis 2017;4:ofx138. [PMID: 28761901 DOI: 10.1093/ofid/ofx138] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 1.4] [Reference Citation Analysis]
39 Su J, Han X, Xu X, Ding W, Li M, Wang W, Tian M, Chen X, Xu B, Chen Z, Yuan J, Qin X, Lin D, Wang R, Gong Y, Pan L, Wang J, Wang M. Simultaneous Detection of Pathogens and Tumors in Patients With Suspected Infections by Next-Generation Sequencing. Front Cell Infect Microbiol 2022;12:892087. [PMID: 35755839 DOI: 10.3389/fcimb.2022.892087] [Reference Citation Analysis]
40 Li H, Gao H, Meng H, Wang Q, Li S, Chen H, Li Y, Wang H. Detection of Pulmonary Infectious Pathogens From Lung Biopsy Tissues by Metagenomic Next-Generation Sequencing. Front Cell Infect Microbiol 2018;8:205. [PMID: 29988504 DOI: 10.3389/fcimb.2018.00205] [Cited by in Crossref: 38] [Cited by in F6Publishing: 42] [Article Influence: 9.5] [Reference Citation Analysis]
41 Bush SJ, Connor TR, Peto TEA, Crook DW, Walker AS. Evaluation of methods for detecting human reads in microbial sequencing datasets. Microb Genom 2020;6. [PMID: 32558637 DOI: 10.1099/mgen.0.000393] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 4.0] [Reference Citation Analysis]
42 Simner PJ, Miller HB, Breitwieser FP, Pinilla Monsalve G, Pardo CA, Salzberg SL, Sears CL, Thomas DL, Eberhart CG, Carroll KC. Development and Optimization of Metagenomic Next-Generation Sequencing Methods for Cerebrospinal Fluid Diagnostics. J Clin Microbiol 2018;56:e00472-18. [PMID: 29976594 DOI: 10.1128/JCM.00472-18] [Cited by in Crossref: 29] [Cited by in F6Publishing: 16] [Article Influence: 7.3] [Reference Citation Analysis]
43 Berger JR, Wilson MR. Next-generation sequencing of tissue: A logical extension. Neurol Neuroimmunol Neuroinflamm 2016;3:e261. [PMID: 27458600 DOI: 10.1212/NXI.0000000000000261] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
44 Ramachandran PS, Wilson MR. Metagenomics for neurological infections - expanding our imagination. Nat Rev Neurol 2020;16:547-56. [PMID: 32661342 DOI: 10.1038/s41582-020-0374-y] [Cited by in Crossref: 15] [Cited by in F6Publishing: 15] [Article Influence: 7.5] [Reference Citation Analysis]
45 Namdari S, Nicholson T, Parvizi J. Cutibacterium acnes is Isolated from Air Swabs: Time to Doubt the Value of Traditional Cultures in Shoulder Surgery? Arch Bone Jt Surg 2020;8:506-10. [PMID: 32884971 DOI: 10.22038/abjs.2020.40642.2095] [Cited by in F6Publishing: 2] [Reference Citation Analysis]
46 Radmard S, Reid S, Ciryam P, Boubour A, Ho N, Zucker J, Sayre D, Greendyke WG, Miko BA, Pereira MR, Whittier S, Green DA, Thakur KT. Clinical Utilization of the FilmArray Meningitis/Encephalitis (ME) Multiplex Polymerase Chain Reaction (PCR) Assay. Front Neurol 2019;10:281. [PMID: 30972012 DOI: 10.3389/fneur.2019.00281] [Cited by in Crossref: 32] [Cited by in F6Publishing: 30] [Article Influence: 10.7] [Reference Citation Analysis]
47 Wang D, Wang W, Ding Y, Tang M, Zhang L, Chen J, You H. Metagenomic Next-Generation Sequencing Successfully Detects Pulmonary Infectious Pathogens in Children With Hematologic Malignancy. Front Cell Infect Microbiol 2022;12:899028. [DOI: 10.3389/fcimb.2022.899028] [Reference Citation Analysis]
48 Zhang Y, Hong K, Zou Y, Bu H. Rapid detection of human herpes virus by next-generation sequencing in a patient with encephalitis. Virol J 2019;16:104. [PMID: 31419985 DOI: 10.1186/s12985-019-1205-x] [Cited by in Crossref: 2] [Article Influence: 0.7] [Reference Citation Analysis]
49 Gihawi A, Rallapalli G, Hurst R, Cooper CS, Leggett RM, Brewer DS. SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines. Genome Biol 2019;20:208. [PMID: 31639030 DOI: 10.1186/s13059-019-1819-8] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
50 Chen Y, Wang Y, Liu X, Li W, Fu H, Liu X, Zhang X, Zhou X, Yang B, Yao J, Ma X, Han L, Li H, Zheng L. Comparative diagnostic utility of metagenomic next-generation sequencing, GeneXpert, modified Ziehl-Neelsen staining, and culture using cerebrospinal fluid for tuberculous meningitis: A multi-center, retrospective study in China. J Clin Lab Anal 2022;:e24307. [PMID: 35202495 DOI: 10.1002/jcla.24307] [Reference Citation Analysis]
51 Zhang J, Luo J, Weng X, Zhu Y, Goyal G, Perna F, Espinoza-Gutarra M, Jiang L, Chen L, Mi JQ. A case report of the metagenomics next-generation sequencing for early detection of central nervous system mucormycosis with successful rescue in patient with recurrent chronic lymphocytic leukemia. Ann Transl Med 2022;10:722. [PMID: 35845522 DOI: 10.21037/atm-22-2533] [Reference Citation Analysis]
52 Dai Y, Chen L, Chang W, Lu H, Cui P, Ma X. Culture-Negative Streptococcus suis Infection Diagnosed by Metagenomic Next-Generation Sequencing. Front Public Health 2019;7:379. [PMID: 31921744 DOI: 10.3389/fpubh.2019.00379] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 2.3] [Reference Citation Analysis]
53 Breitwieser FP, Pertea M, Zimin AV, Salzberg SL. Human contamination in bacterial genomes has created thousands of spurious proteins. Genome Res 2019;29:954-60. [PMID: 31064768 DOI: 10.1101/gr.245373.118] [Cited by in Crossref: 42] [Cited by in F6Publishing: 28] [Article Influence: 14.0] [Reference Citation Analysis]
54 Brown JR, Bharucha T, Breuer J. Encephalitis diagnosis using metagenomics: application of next generation sequencing for undiagnosed cases. J Infect. 2018;76:225-240. [PMID: 29305150 DOI: 10.1016/j.jinf.2017.12.014] [Cited by in Crossref: 88] [Cited by in F6Publishing: 80] [Article Influence: 22.0] [Reference Citation Analysis]
55 Chen YY, Xue XH. Coinfection of Streptococcus suis and Nocardia asiatica in the human central nervous system: A case report. World J Clin Cases 2022; 10(18): 6283-6288 [DOI: 10.12998/wjcc.v10.i18.6283] [Reference Citation Analysis]
56 Carbo EC, Blankenspoor I, Goeman JJ, Kroes ACM, Claas ECJ, De Vries JJC. Viral metagenomic sequencing in the diagnosis of meningoencephalitis: a review of technical advances and diagnostic yield. Expert Rev Mol Diagn 2021;21:1139-46. [PMID: 34607520 DOI: 10.1080/14737159.2021.1985467] [Reference Citation Analysis]
57 Breitwieser FP, Salzberg SL. Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification. Bioinformatics 2020;36:1303-4. [PMID: 31553437 DOI: 10.1093/bioinformatics/btz715] [Cited by in Crossref: 62] [Cited by in F6Publishing: 56] [Article Influence: 31.0] [Reference Citation Analysis]
58 Zhao N, Cao J, Xu J, Liu B, Liu B, Chen D, Xia B, Chen L, Zhang W, Zhang Y, Zhang X, Duan Z, Wang K, Xie F, Xiao K, Yan W, Xie L, Zhou H, Wang J. Targeting RNA with Next- and Third-Generation Sequencing Improves Pathogen Identification in Clinical Samples. Adv Sci (Weinh) 2021;8:e2102593. [PMID: 34687159 DOI: 10.1002/advs.202102593] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 3.0] [Reference Citation Analysis]
59 Namdari S, Nicholson T, Abboud J, Lazarus M, Ramsey ML, Williams G, Parvizi J. Cutibacterium acnes is less commonly identified by next-generation sequencing than culture in primary shoulder surgery. Shoulder Elbow 2020;12:170-7. [PMID: 32565918 DOI: 10.1177/1758573219842160] [Cited by in Crossref: 1] [Article Influence: 0.5] [Reference Citation Analysis]
60 Jin Y, Wang Z, Zhu C, Yang Q, Lu Y, Yu X, Hong B, Wang X, Zhang Y. Case Report: Proven Diagnosis of Culture-Negative Chronic Disseminated Candidiasis in a Patient Suffering From Hematological Malignancy: Combined Application of mNGS and CFW Staining. Front Med (Lausanne) 2021;8:627166. [PMID: 33718404 DOI: 10.3389/fmed.2021.627166] [Reference Citation Analysis]
61 Dubey D, Pittock SJ, Kelly CR, McKeon A, Lopez-Chiriboga AS, Lennon VA, Gadoth A, Smith CY, Bryant SC, Klein CJ, Aksamit AJ, Toledano M, Boeve BF, Tillema JM, Flanagan EP. Autoimmune encephalitis epidemiology and a comparison to infectious encephalitis. Ann Neurol. 2018;83:166-177. [PMID: 29293273 DOI: 10.1002/ana.25131] [Cited by in Crossref: 194] [Cited by in F6Publishing: 156] [Article Influence: 64.7] [Reference Citation Analysis]
62 Tsamis KI, Sakkas H, Giannakis A, Ryu HS, Gartzonika C, Nikas IP. Evaluating Infectious, Neoplastic, Immunological, and Degenerative Diseases of the Central Nervous System with Cerebrospinal Fluid-Based Next-Generation Sequencing. Mol Diagn Ther 2021;25:207-29. [PMID: 33646562 DOI: 10.1007/s40291-021-00513-x] [Reference Citation Analysis]
63 Hirakata S, Sakiyama Y, Yoshimura A, Ikeda M, Takahata K, Tashiro Y, Yoshimura M, Arata H, Yonezawa H, Kirishima M, Higashi M, Hatanaka M, Kanekura T, Yagita K, Matsuura E, Takashima H. The application of shotgun metagenomics to the diagnosis of granulomatous amoebic encephalitis due to Balamuthia mandrillaris: a case report. BMC Neurol 2021;21:392. [PMID: 34627183 DOI: 10.1186/s12883-021-02418-y] [Reference Citation Analysis]
64 Li X, Li J, Wu G, Wang M, Jing Z. Detection of Japanese Encephalitis by Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid: A Case Report and Literature Review. Front Cell Neurosci 2022;16:856512. [DOI: 10.3389/fncel.2022.856512] [Reference Citation Analysis]
65 Tang W, Zhang Y, Luo C, Zhou L, Zhang Z, Tang X, Zhao X, An Y. Clinical Application of Metagenomic Next-Generation Sequencing for Suspected Infections in Patients With Primary Immunodeficiency Disease. Front Immunol 2021;12:696403. [PMID: 34484193 DOI: 10.3389/fimmu.2021.696403] [Reference Citation Analysis]