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For: Garg S. Computational methods for chromosome-scale haplotype reconstruction. Genome Biol 2021;22:101. [PMID: 33845884 DOI: 10.1186/s13059-021-02328-9] [Cited by in F6Publishing: 16] [Reference Citation Analysis]
Number Citing Articles
1 Hu Y, Mangal S, Zhang L, Zhou X. Automated filtering of genome-wide large deletions through an ensemble deep learning framework. Methods 2022;206:77-86. [PMID: 36038049 DOI: 10.1016/j.ymeth.2022.08.001] [Reference Citation Analysis]
2 Zhang T, Zhou J, Gao W, Jia Y, Wei Y, Wang G. Complex genome assembly based on long-read sequencing. Brief Bioinform 2022:bbac305. [PMID: 35940845 DOI: 10.1093/bib/bbac305] [Reference Citation Analysis]
3 Garg S, Balboa R, Kuja J. Chromosome-scale haplotype-resolved pangenomics. Trends Genet 2022:S0168-9525(22)00166-4. [PMID: 35817620 DOI: 10.1016/j.tig.2022.06.011] [Reference Citation Analysis]
4 Kang X, Luo X, Schönhuth A. StrainXpress: strain aware metagenome assembly from short reads. Nucleic Acids Res 2022:gkac543. [PMID: 35776122 DOI: 10.1093/nar/gkac543] [Reference Citation Analysis]
5 Browning BL, Browning SR. Genotype error biases trio-based estimates of haplotype phase accuracy. Am J Hum Genet 2022;109:1016-25. [PMID: 35659928 DOI: 10.1016/j.ajhg.2022.04.019] [Reference Citation Analysis]
6 Fruzangohar M, Timmins WA, Kravchuk O, Taylor J. HaploMaker: An improved algorithm for rapid haplotype assembly of genomic sequences. Gigascience 2022;11:giac038. [PMID: 35579550 DOI: 10.1093/gigascience/giac038] [Reference Citation Analysis]
7 Ghazi AR, Münch PC, Chen D, Jensen J, Huttenhower C. Strain identification and quantitative analysis in microbial communities. Journal of Molecular Biology 2022. [DOI: 10.1016/j.jmb.2022.167582] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 3.0] [Reference Citation Analysis]
8 Masset H, Ding J, Dimitriadou E, Debrock S, Tšuiko O, Smits K, Peeraer K, Voet T, Zamani Esteki M, Vermeesch JR. Single-cell genome-wide concurrent haplotyping and copy-number profiling through genotyping-by-sequencing. Nucleic Acids Res 2022:gkac134. [PMID: 35212381 DOI: 10.1093/nar/gkac134] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
9 Leger A, Brettell I, Monahan J, Barton C, Wolf N, Kusminski N, Herder C, Aadepu N, Becker C, Gierten J, Hammouda OT, Hasel E, Lischik C, Lust K, Sokolova N, Suzuki R, Tavhelidse T, Thumberger T, Tsingos E, Watson P, Welz B, Naruse K, Loosli F, Wittbrodt J, Birney E, Fitzgerald T. Genomic variations and epigenomic landscape of the Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel. Genome Biol 2022;23:58. [PMID: 35189951 DOI: 10.1186/s13059-022-02602-4] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
10 Lou H, Gao Y, Xie B, Wang Y, Zhang H, Shi M, Ma S, Zhang X, Liu C, Xu S. Haplotype-resolved de novo assembly of a Tujia genome suggests the necessity for high-quality population-specific genome references. Cell Syst 2022:S2405-4712(22)00041-2. [PMID: 35180379 DOI: 10.1016/j.cels.2022.01.006] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 3.0] [Reference Citation Analysis]
11 Ramos L, Antunes A. Decoding sex: Elucidating sex determination and how high-quality genome assemblies are untangling the evolutionary dynamics of sex chromosomes. Genomics 2022;:110277. [PMID: 35104609 DOI: 10.1016/j.ygeno.2022.110277] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 3.0] [Reference Citation Analysis]
12 Luo X, Kang X, Schönhuth A. Strainline: full-length de novo viral haplotype reconstruction from noisy long reads. Genome Biol 2022;23. [DOI: 10.1186/s13059-021-02587-6] [Reference Citation Analysis]
13 Miller DB, Piccolo SR. trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios. BMC Bioinformatics 2021;22:559. [PMID: 34809557 DOI: 10.1186/s12859-021-04470-4] [Reference Citation Analysis]
14 Raza SHA, Khan R, Pant SD, Shah MA, Quan G, Feng L, Cheng G, Gui LS, Zan L. Genetic variation in the OPN gene affects milk composition in Chinese Holstein cows. Anim Biotechnol 2021;:1-7. [PMID: 34779705 DOI: 10.1080/10495398.2021.2001343] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
15 Bhat JA, Yu D, Bohra A, Ganie SA, Varshney RK. Features and applications of haplotypes in crop breeding. Commun Biol 2021;4:1266. [PMID: 34737387 DOI: 10.1038/s42003-021-02782-y] [Cited by in Crossref: 1] [Cited by in F6Publishing: 9] [Article Influence: 1.0] [Reference Citation Analysis]
16 Huang B, Wei G, Wang B, Ju F, Zhong Y, Shi Z, Sun S, Bu D. Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph. BMC Bioinformatics 2021;22:533. [PMID: 34717539 DOI: 10.1186/s12859-021-04448-2] [Reference Citation Analysis]