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For: Bastian FB, Roux J, Niknejad A, Comte A, Fonseca Costa SS, de Farias TM, Moretti S, Parmentier G, de Laval VR, Rosikiewicz M, Wollbrett J, Echchiki A, Escoriza A, Gharib WH, Gonzales-Porta M, Jarosz Y, Laurenczy B, Moret P, Person E, Roelli P, Sanjeev K, Seppey M, Robinson-Rechavi M. The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. Nucleic Acids Res 2021;49:D831-47. [PMID: 33037820 DOI: 10.1093/nar/gkaa793] [Cited by in Crossref: 43] [Cited by in F6Publishing: 51] [Article Influence: 43.0] [Reference Citation Analysis]
Number Citing Articles
1 Brasó-vives M, Marlétaz F, Echchiki A, Mantica F, Acemel RD, Gómez-skarmeta JL, Hartasánchez DA, Le Targa L, Pontarotti P, Tena JJ, Maeso I, Escriva H, Irimia M, Robinson-rechavi M. Parallel evolution of amphioxus and vertebrate small-scale gene duplications. Genome Biol 2022;23:243. [DOI: 10.1186/s13059-022-02808-6] [Reference Citation Analysis]
2 Card DC, Van Camp AG, Santonastaso T, Jensen-seaman MI, Anthony NM, Edwards SV. Structure and evolution of the squamate major histocompatibility complex as revealed by two Anolis lizard genomes. Front Genet 2022;13. [DOI: 10.3389/fgene.2022.979746] [Reference Citation Analysis]
3 Shen WK, Chen SY, Gan ZQ, Zhang YZ, Yue T, Chen MM, Xue Y, Hu H, Guo AY. AnimalTFDB 4.0: a comprehensive animal transcription factor database updated with variation and expression annotations. Nucleic Acids Res 2022:gkac907. [PMID: 36268869 DOI: 10.1093/nar/gkac907] [Reference Citation Analysis]
4 Jankovičová J, Sečová P, Horovská Ľ, Olexiková L, Dujíčková L, Makarevich AV, Michalková K, Antalíková J. Distribution of tetraspanins in bovine ovarian tissue and fresh/vitrified oocytes. Histochem Cell Biol 2022. [PMID: 36242635 DOI: 10.1007/s00418-022-02155-4] [Reference Citation Analysis]
5 Graf L, Shin Y, Yang JH, Hwang IK, Yoon HS. Transcriptome analysis reveals the spatial and temporal differentiation of gene expression in the sporophyte of Undaria pinnatifida. Algal Research 2022. [DOI: 10.1016/j.algal.2022.102883] [Reference Citation Analysis]
6 Gallopin M, Drevet C, de la Torre VSG, Jelassi S, Michel M, Ducos C, Saule C, Majorel C, Burtet-sarramegna V, Pillon Y, Bastide P, Lespinet O, Merlot S. Detection of orthologous genes with expression shifts linked to nickel hyperaccumulation across Eudicots.. [DOI: 10.1101/2022.09.28.509953] [Reference Citation Analysis]
7 Bohar B, Fazekas D, Madgwick M, Csabai L, Olbei M, Korcsmáros T, Szalay-beko M. Sherlock: an open-source data platform to store, analyze and integrate Big Data for computational biologists. F1000Res 2021;10:409. [DOI: 10.12688/f1000research.52791.2] [Reference Citation Analysis]
8 Reiswich V, Könemann S, Lennartz M, Höflmayer D, Menz A, Chirico V, Hube-Magg C, Fraune C, Bernreuther C, Simon R, Clauditz TS, Sauter G, Hinsch A, Kind S, Jacobsen F, Steurer S, Minner S, Büscheck F, Burandt E, Marx AH, Lebok P, Krech T. Large-scale human tissue analysis identifies Uroplakin 1a as a putative diagnostic marker for urothelial cancer. Pathol Res Pract 2022;237:154028. [PMID: 35872365 DOI: 10.1016/j.prp.2022.154028] [Reference Citation Analysis]
9 Sima AC, Mendes de Farias T, Anisimova M, Dessimoz C, Robinson-rechavi M, Zbinden E, Stockinger K. Bio-SODA UX: enabling natural language question answering over knowledge graphs with user disambiguation. Distrib Parallel Databases. [DOI: 10.1007/s10619-022-07414-w] [Reference Citation Analysis]
10 Truter N, van Rensburg ZJ, Oudrhiri R, Singh R, Louw C. Supervised machine learning with feature selection for prioritization of targets related to time-based cellular dysfunction in aging.. [DOI: 10.1101/2022.06.24.497511] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
11 Lenárt S, Lenárt P, Knopfová L, Kotasová H, Pelková V, Sedláková V, Vacek O, Pokludová J, Čan V, Šmarda J, Souček K, Hampl A, Beneš P. TACSTD2 upregulation is an early reaction to lung infection. Sci Rep 2022;12:9583. [PMID: 35688908 DOI: 10.1038/s41598-022-13637-9] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
12 Chandak P, Huang K, Zitnik M. Building a knowledge graph to enable precision medicine.. [DOI: 10.1101/2022.05.01.489928] [Reference Citation Analysis]
13 Nogueira E, Tirpák F, Hamilton LE, Zigo M, Kerns K, Sutovsky M, Kim J, Volkmann D, Jovine L, Taylor JF, Schnabel RD, Sutovsky P. A Non-Synonymous Point Mutation in a WD-40 Domain Repeat of EML5 Leads to Decreased Bovine Sperm Quality and Fertility. Front Cell Dev Biol 2022;10:872740. [PMID: 35478957 DOI: 10.3389/fcell.2022.872740] [Reference Citation Analysis]
14 Antalíková J, Sečová P, Michalková K, Horovská Ľ, Páleníková V, Jankovičová J. Expression of αV integrin and its potential partners in bull reproductive tissues, germ cells and spermatozoa. Int J Biol Macromol 2022:S0141-8130(22)00699-7. [PMID: 35413326 DOI: 10.1016/j.ijbiomac.2022.04.001] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
15 Costa SSF, Rosikiewicz M, Roux J, Wollbrett J, Bastian FB, Robinson-rechavi M. Robust inference of expression state in bulk and single-cell RNA-Seq using curated intergenic regions.. [DOI: 10.1101/2022.03.31.486555] [Reference Citation Analysis]
16 Maksimov M, Ashbrook DG, Villani F, Colonna V, Mousavi N, Ma N, Palmer AA, Gymrek M, BXD Sequencing Consortium. A novel quantitative trait locus implicates Msh3 in the propensity for genome-wide short tandem repeat expansions in mice.. [DOI: 10.1101/2022.03.02.482700] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
17 Kos R, Israëls J, Gogh CDL, Altenburg J, Diepenhorst S, Paff T, Boon EMJ, Micha D, Pals G, Neerincx AH, Maitland‐van der Zee AH, Haarman EG, Amsterdam Mucociliary Clearance Disease (AMCD) Research Group. Primary ciliary dyskinesia in Volendam: Diagnostic and phenotypic features in patients with a CCDC114 mutation. American J of Med Genetics Pt C 2022;190:89-101. [DOI: 10.1002/ajmg.c.31968] [Reference Citation Analysis]
18 Casey F, Negi S, Zhu J, Sun YH, Zavodszky M, Cheng D, Lin D, John S, Penny MA, Sexton D, Zhang B. OmicsView: omics data analysis through interactive visual analytics. Computational and Structural Biotechnology Journal 2022. [DOI: 10.1016/j.csbj.2022.02.022] [Reference Citation Analysis]
19 Indrischek H, Hammer J, Machate A, Hecker N, Kirilenko BM, Roscito JG, Hans S, Norden C, Brand M, Hiller M. Vision-related convergent gene losses reveal SERPINE3’s unknown role in the eye.. [DOI: 10.1101/2022.02.25.481972] [Reference Citation Analysis]
20 Kucher AN, Koroleva IA, Zarubin AA, Nazarenko MS. MicroRNAs as the Potential Regulators of SARS-CoV-2 Infection and Modifiers of the COVID-19 Clinical Features. Mol Biol 2022;56:29-45. [DOI: 10.1134/s0026893322010034] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
21 Saito T, Whatmore P, Taylor JF, Fernandes JMO, Adam AC, Tocher DR, Espe M, Skjærven KH. Micronutrient supplementation affects DNA methylation in male gonads with potential intergenerational epigenetic inheritance involving the embryonic development through glutamate receptor-associated genes. BMC Genomics 2022;23:115. [PMID: 35144563 DOI: 10.1186/s12864-022-08348-4] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
22 Lannelongue L, Inouye M. Construction of in silico protein-protein interaction networks across different topologies using machine learning.. [DOI: 10.1101/2022.02.07.479382] [Reference Citation Analysis]
23 Bastide P, Soneson C, Lespinet O, Gallopin M. Benchmark of Differential Gene Expression Analysis Methods for Inter-species RNA-Seq Data using a Phylogenetic Simulation Framework.. [DOI: 10.1101/2022.01.21.476612] [Reference Citation Analysis]
24 Brasó-vives M, Marlétaz F, Echchiki A, Mantica F, Acemel RD, Gómez-skarmeta JL, Hartasánchez DA, Targa LL, Pontarotti P, Tena JJ, Maeso I, Escriva H, Irimia M, Robinson-rechavi M. Parallel evolution of amphioxus and vertebrate small-scale gene duplications.. [DOI: 10.1101/2022.01.18.476203] [Reference Citation Analysis]
25 Nadendla S, Jackson R, Munro J, Quaglia F, Mészáros B, Olley D, Hobbs ET, Goralski SM, Chibucos M, Mungall CJ, Tosatto SCE, Erill I, Giglio MG. ECO: the Evidence and Conclusion Ontology, an update for 2022. Nucleic Acids Res 2022;50:D1515-21. [PMID: 34986598 DOI: 10.1093/nar/gkab1025] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 4.0] [Reference Citation Analysis]
26 Zancolli G, Reijnders M, Waterhouse RM, Robinson-Rechavi M. Convergent evolution of venom gland transcriptomes across Metazoa. Proc Natl Acad Sci U S A 2022;119:e2111392119. [PMID: 34983844 DOI: 10.1073/pnas.2111392119] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
27 Galluzzo Y. A Review: Biological Insights on Knowledge Graphs. New Trends in Database and Information Systems 2022. [DOI: 10.1007/978-3-031-15743-1_36] [Reference Citation Analysis]
28 Saik OV, Klimontov VV. Hypoglycemia, Vascular Disease and Cognitive Dysfunction in Diabetes: Insights from Text Mining-Based Reconstruction and Bioinformatics Analysis of the Gene Networks. Int J Mol Sci 2021;22:12419. [PMID: 34830301 DOI: 10.3390/ijms222212419] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
29 Ramesh R, Skog S, Nätt D, Kugelberg U, Örkenby L, Öst A. Nutritional dependence of sperm mitochondrial metabolism and small RNA biogenesis.. [DOI: 10.1101/2021.10.20.465156] [Reference Citation Analysis]
30 Calvanese D, Lanti D, Mendes De Farias T, Mosca A, Xiao G. Accessing scientific data through knowledge graphs with Ontop. Patterns (N Y) 2021;2:100346. [PMID: 34693372 DOI: 10.1016/j.patter.2021.100346] [Cited by in Crossref: 2] [Article Influence: 2.0] [Reference Citation Analysis]
31 Sachkova MY, Nordmann EL, Soto-Àngel JJ, Meeda Y, Górski B, Naumann B, Dondorp D, Chatzigeorgiou M, Kittelmann M, Burkhardt P. Neuropeptide repertoire and 3D anatomy of the ctenophore nervous system. Curr Biol 2021:S0960-9822(21)01245-8. [PMID: 34587474 DOI: 10.1016/j.cub.2021.09.005] [Cited by in Crossref: 18] [Cited by in F6Publishing: 21] [Article Influence: 18.0] [Reference Citation Analysis]
32 Duvaud S, Gabella C, Lisacek F, Stockinger H, Ioannidis V, Durinx C. Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users. Nucleic Acids Res 2021;49:W216-27. [PMID: 33849055 DOI: 10.1093/nar/gkab225] [Cited by in Crossref: 92] [Cited by in F6Publishing: 106] [Article Influence: 92.0] [Reference Citation Analysis]
33 [DOI: 10.1145/3468791.3469119] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
34 Urkasemsin G, Pongpanich M, Sariya L, Kongcharoen A, Buddhirongawatr R, Rungarunlert S, Ferreira JN, Chetruengchai W, Phokaew C, Srichomthong C, Shotelersuk V. Whole genome sequencing identifies a homozygous nonsense mutation in the JPH2 gene in Shih Tzu dogs with progressive retinal atrophy. Anim Genet 2021. [PMID: 34231238 DOI: 10.1111/age.13118] [Reference Citation Analysis]
35 Zancolli G, Reijnders M, Waterhouse RM, Robinson-rechavi M. Convergent evolution of venom gland transcriptomes across Metazoa.. [DOI: 10.1101/2021.07.04.451048] [Reference Citation Analysis]
36 Skinnider MA, Scott NE, Prudova A, Kerr CH, Stoynov N, Stacey RG, Chan QWT, Rattray D, Gsponer J, Foster LJ. An atlas of protein-protein interactions across mouse tissues. Cell 2021;184:4073-4089.e17. [PMID: 34214469 DOI: 10.1016/j.cell.2021.06.003] [Cited by in Crossref: 26] [Cited by in F6Publishing: 27] [Article Influence: 26.0] [Reference Citation Analysis]
37 Lenárt S, Lenárt P, Knopfová L, Kotasová H, Pelková V, Sedláková V, Čan V, Šmarda J, Souček K, Hampl A, Beneš P. TACSTD2 upregulation is an early reaction to lung infection.. [DOI: 10.1101/2021.06.29.450320] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
38 Orosz F. Truncated TPPP - An Endopterygota-specific protein. Heliyon 2021;7:e07135. [PMID: 34136696 DOI: 10.1016/j.heliyon.2021.e07135] [Reference Citation Analysis]
39 Dingerdissen HM, Vora J, Cauley E, Bell A, King CH, Mazumder R. Differential expression of glycosyltransferases identified through comprehensive pan-cancer analysis.. [DOI: 10.1101/2021.06.15.448506] [Reference Citation Analysis]
40 Hainaut M, Clarke HJ. Germ cells of the mammalian female: A limited or renewable resource? Biol Reprod 2021:ioab115. [PMID: 34114006 DOI: 10.1093/biolre/ioab115] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
41 Bohar B, Fazekas D, Madgwick M, Csabai L, Olbei M, Korcsmáros T, Szalay-beko M. Sherlock: an open-source data platform to store, analyze and integrate Big Data for biology. F1000Res 2021;10:409. [DOI: 10.12688/f1000research.52791.1] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
42 Jovanovic VM, Sarfert M, Reyna-Blanco CS, Indrischek H, Valdivia DI, Shelest E, Nowick K. Positive Selection in Gene Regulatory Factors Suggests Adaptive Pleiotropic Changes During Human Evolution. Front Genet 2021;12:662239. [PMID: 34079582 DOI: 10.3389/fgene.2021.662239] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 4.0] [Reference Citation Analysis]
43 Wang HV, Forestier S, Corces VG. Exposure to sevoflurane results in changes of transcription factor occupancy in sperm and inheritance of autism. Biol Reprod 2021:ioab097. [PMID: 33982067 DOI: 10.1093/biolre/ioab097] [Cited by in Crossref: 5] [Cited by in F6Publishing: 6] [Article Influence: 5.0] [Reference Citation Analysis]
44 Su C, Hou Y, Rajendran S, Maasch JRMA, Abedi Z, Zhang H, Bai Z, Cuturrufo A, Guo W, Chaudhry FF, Ghahramani G, Tang J, Cheng F, Li Y, Zhang R, Bian J, Wang F. Biomedical Discovery through the integrative Biomedical Knowledge Hub (iBKH).. [DOI: 10.1101/2021.03.12.21253461] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
45 Hedgespeth BA, Birkenheuer AJ, Friedenberg SG, Olby NJ, Meurs KM. A novel missense mutation of the NAT10 gene in a juvenile Schnauzer dog with chronic respiratory tract infections. J Vet Intern Med 2021;35:1542-6. [PMID: 33755251 DOI: 10.1111/jvim.16100] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
46 Wang HV, Forestier S, Corces VG. Exposure to sevoflurane results in changes of transcription factor occupancy in sperm and inheritance of autism.. [DOI: 10.1101/2021.03.08.434461] [Reference Citation Analysis]
47 Sparapani S, Millet-Boureima C, Oliver J, Mu K, Hadavi P, Kalostian T, Ali N, Avelar CM, Bardies M, Barrow B, Benedikt M, Biancardi G, Bindra R, Bui L, Chihab Z, Cossitt A, Costa J, Daigneault T, Dault J, Davidson I, Dias J, Dufour E, El-Khoury S, Farhangdoost N, Forget A, Fox A, Gebrael M, Gentile MC, Geraci O, Gnanapragasam A, Gomah E, Haber E, Hamel C, Iyanker T, Kalantzis C, Kamali S, Kassardjian E, Kontos HK, Le TBU, LoScerbo D, Low YF, Mac Rae D, Maurer F, Mazhar S, Nguyen A, Nguyen-Duong K, Osborne-Laroche C, Park HW, Parolin E, Paul-Cole K, Peer LS, Philippon M, Plaisir CA, Porras Marroquin J, Prasad S, Ramsarun R, Razzaq S, Rhainds S, Robin D, Scartozzi R, Singh D, Fard SS, Soroko M, Soroori Motlagh N, Stern K, Toro L, Toure MW, Tran-Huynh S, Trépanier-Chicoine S, Waddingham C, Weekes AJ, Wisniewski A, Gamberi C. The Biology of Vasopressin. Biomedicines 2021;9:89. [PMID: 33477721 DOI: 10.3390/biomedicines9010089] [Cited by in Crossref: 13] [Cited by in F6Publishing: 14] [Article Influence: 13.0] [Reference Citation Analysis]
48 Saik OV, Klimontov VV. Bioinformatic Reconstruction and Analysis of Gene Networks Related to Glucose Variability in Diabetes and Its Complications. Int J Mol Sci 2020;21:E8691. [PMID: 33217980 DOI: 10.3390/ijms21228691] [Cited by in Crossref: 13] [Cited by in F6Publishing: 14] [Article Influence: 6.5] [Reference Citation Analysis]