Review
Copyright ©The Author(s) 2024.
World J Gastrointest Pharmacol Ther. Nov 5, 2024; 15(6): 98146
Published online Nov 5, 2024. doi: 10.4292/wjgpt.v15.i6.98146
Table 1 Summary of published studies on gut microbiota and hepatic diseases
Ref.
Population
Disease focus
Key findings
Implications
Chen et al[87], 201136 cirrhosis patients; 24 healthy controlsCirrhosis↑ Proteobacteria; ↑ Fusobacteria; ↑ Enterobacteriacea; ↑ Veillonellacea; ↑ Streptococcaceae; ↓ Bacteroidetes; ↓ LachnospiraceaeDysbiosis due to increased Enterobacteriaceae and Streptococcaceae may affect the prognosis of cirrhosis patients
Liu et al[88], 2012Cirrhosis patients vs healthy controlsCirrhosis↓ Bifidobacterium; ↓ Bacteroidetes; ↑ Proteobacteria; ↑ Fusobacteria; ↑ Enterobacteriaceae; ↑ EnterococcusOn releasing endotoxin by enterobacteriaceae, intestinal permeability is increased
Bajaj et al[89], 201225 cirrhosis patients: 17 with HE and 8 without HE; 10 healthy controlsCirrhosis↑ Bacteroidetes; ↑ Veillonellaceae in HE; ↑ Enterobacteriacea; ↑ Alcaligeneceae; ↑ Porphyromonadacea; ↑ Fusobacteriaceae; ↓ Ruminococcaceae; ↓ LachnospiraceaeDysbiosis was found in patients with HE compared to healthy individuals; endotoxemia, impaired cognition, and inflammation in the liver were seen in patients with HE
Mutlu et al[26], 2012ALD patients vs healthy controlALD↑ Proteobacteria; ↓ Bacteroidetes; ↓ Firmicutes; ↑ Enterobacteriaceae; ↓ Bacteroidetes; ↓ LactobacillusDecreased beneficial bacteria and increased intestinal permeability result in systemic endotoxemia
Zhang et al[90], 201326 cirrhosis patients with HE; 25 cirrhosis patients without HE; 26 healthy controlsCirrhosisStreptococcus salivarius in HE; ↑ Streptococcaceae; ↑ VeillonellaceaeStreptococcus salivarius was found in patients with HE due to increased ammonia
Wong et al[91], 2013NASH patients and healthy controlsNASH↓ Firmicutes; ↓ Clostridiales (Faecalibacterium & Anaerosporobacte); ↑ Bacteroidetes (Parabacteroides & Allisonella)
Mouzaki et al[92], 201333 NAFLD patients; 11 steatosis patients; 22 NASH patients; 17 normal controlsNAFLD; NASH; steatosisC. Coccoides in NASH; ↓ Bacteroidetes in NASHThe relationship between Bacteroidetes and liver disease state was independent of increase in BMI
Zhu et al[51], 201322 NASH patients; 25 obese people; 16 healthy controlsNASH↑ Bacteroides (Prevotella); ↑ Proteobacteria (Escherichia); ↓ Firmicutes; ↓ ActinobacteriaIncreased population of ethanol producing bacteria in patients with NASH contributed to disease progression; increased ethanol-producing bacteria (Escherichia) was due to the use of antibiotics
Raman et al[30], 201330 NAFLD patients; 30 healthy controls NAFLD↑ Proteobacteria; ↑ Firmicutes; ↓ BacteroidetesFaecal ester volatile organic compounds could negatively influence the microbiome composition of patients with NAFLD
Kakiyama et al[93], 201347 cirrhosis patients; 14 healthy controlsCirrhosis↑ Staphylococcaeae; ↑ Enterobacteriaceae; ↑ Enterococcaceae; ↓ Lachnospiraceae; ↓ Ruminococcaceae; ↓ Clostridiales XIV; ↓ BlautiaIncreased pathogenic bacteria as a result of gut dysbiosis in cirrhotic patients with altered bile acid composition
Qin et al[94], 201498 cirrhosis patients; 83 controls Cirrhosis↑ Proteobacteria; ↑ Veillonella; ↑ Streptococcus; ↓ Bacteroidetes; ↓ Lachnospiraceae; ↓ Ruminococcaceae; ↓ BlautiaOral commensals were found in the gut of cirrhotic patients
Bajaj et al[4,95,96], 2014, 2016, and 2019HE patients vs healthy controlHE due to cirrhosis↑ Megasphaera; ↑ Enterococcus; ↑ Burkholderia; ↑ Veillonellaceae; ↓ Fecalibacterium; ↓ Blautia; ↓ Roseburia; ↓ DoreaIncreased pathogenic bacteria are linked with poor cognition and inflammation
Bajaj et al[97], 2014Cirrhosis patients vs healthy controlsCirrhosis↑ Veillonella spp.; ↑ Streptococcus spp.; ↓ Bacteroidetes; ↓ Firmicutes
Grat et al[98], 201615 HCC patients; 5 patients without HCC; all participants with cirrhosis underwent liver transplantationHCCE. coli; ↑ Enterobacteriaceae; ↑ Enterococcus; ↑ Lactobacillus; ↑ H2O2-producing Lactobacillus speciesIncreased faecal counts of E. coli were noted in the cirrhotic-HCC group, indicating its association with HCC development
Llopis et al[27], 2016Severe AH patients vs healthy controlAlcoholic
hepatitis
↑ Bifidobacteria; ↑ Streptococci; ↑ Enterobacteria; ↓ Clostridium leptum; ↓ Faecalibacterium prausnitziithanDecreased anti-inflammatory bacteria and enhanced intestinal dysbiosis result in gut permeability which facilitates microbiota translocation
Chen et al[99], 201630 cirrhosis patients; 28 healthy controlsCirrhosis↑ Veillonella; ↑ Megasphaera; ↑ Dialister; ↑ Atopobium; ↑ Prevotella; ↑ FirmicutesRaised oral commensal bacteria were found in duodenal mucosal microbiota of cirrhotic patients
Ahluwalia et al[100], 201687 patients with HE; 40 healthy controls Cirrhosis↑ Enterobacteriaceae; ↓ Lachnospiraceae; ↓ RuminococcaceaeSpecific bacterial families were associated with astrocytic and neuronal MRI changes; gut dysbiosis in cirrhosis was linked with systemic inflammation, elevated ammonia levels, and neuronal dysfunction
Yang et al[101], 2017ALD patients vs healthy controlsALD↑ Candida; ↓ Epicoccum; ↓ Galactomyces
Dubinkina et al[102], 2017ALD patients vs healthy controlsALD↑ Bifidobacterium; ↑ Streptococcus spp; ↑ Lactobacillus spp; ↓ Prevotella; ↓ Paraprevotella; ↓ Alistipes
Chierico et al[29], 201761 NASH/NAFLD patients;
54 healthy controls
NAFLD; NASH↑ Actinobacteria; ↑ Bradyrhizobium; ↑ Anaerococcus; ↑ Peptoniphilus; ↑ P.acnes; ↑ Enterobacteriaceae (Escherichia coli); ↑ Dorea; ↑ Ruminococcus; ↓ Bacteroidetes; ↓ Oscillospira; ↓ RikenellaceaeIncreased microbial diversity in NASH/NAFLD; decreased Bacteroidaceae and Bacteroides were observed in NAFLD and NASH, while they were increased in obese patients compared to controls; increased ethanol-producing bacteria (Enterobacteriaceae) in NAFL/NASH compared to controls
Loomba et al[103], 2017NAFLD patients and healthy controlsNAFLDEscherichia coli; ↑ Bacteriodes vulgatus; ↓ Ruminococcus spp.; ↓ Eubacterium rectale; ↓ Faecalibacterium prausnitzii
Liu et al[104], 201836 cirrhosis patients; 20 healthy controls Cirrhosis↑ Firmicutes; ↓ BacteroidetesMicrobial dysbiosis in cirrhotic patients with Child-Pugh scores > 5 led to decreased gut motility
Ren et al[105], 201975 early HCC patients; 40 Liver cirrhosis patients; 75 healthy controlsHCC↑ Actinobacteria; ↑ Gemmiger; ↑ Parabacteroides; ↑ Paraprevotella; ↑ Klebsiella; ↑ Haemophilus; ↓ Verrucomicrobia; ↓ Alistipes; ↓ Phascolarctobacterium; ↓ Ruminococcus; ↓ Oscillibacter; ↓ Faecalibacterium; ↓ Clostridium IV; ↓ CoprococcusDecreased butyrate-producing bacteria and increased LPS-producing bacteria observed in early HCC
Ponziani et al[106], 201921 NAFLD-related cirrhosis patients with HCC; 20 NAFLD related cirrhosis patients without HCC; 20 healthy controlsHCC↑ Bacteroides; ↓ Ruminococcaceae; ↑ Bifidobacterium Increased faecal calprotectin in HCC patients is an indicator of inflammatory state
Piñero et al[107], 2019407 cirrhosis patients: 25 with HCC; 25 without HCC; 25 healthy controls HCC↑ Erysipelotrichaceae; ↑ Odoribacter; ↑ Butyricimonas; ↓ Leuconostocaceae; ↓ Fusobacterium; ↓ LachnospiraceaeDecreased Prevotella in cirrhotic patients with HCC, is associated with activation of several inflammatory pathways
Ni et al[108], 201968 primary HCC patients: (23 Stage I, 13 Stage II, 30 Stage III, 2 Stage IV); 18 healthy controls HCC↑ Dysbiosis index Proteobacteria (Enterobacter, Haemophilus); ↑ Desulfococcus; ↑ Prevotella; ↑ Veillonella; ↓ CetobacteriumDysbiosis is seen in patients with primary HCC when compared to healthy controls
Liu et al[69], 201957 HCC patients (35 with HBV related HCC, 22 with non-HBV non-HCV related HCC); 33 healthy controls HCC↑ Bifidobacterium; ↑ Lactobacillus; ↓ Proteobacteria; ↓ Firmicutes Decreased anti-inflammatory and increased pro-inflammatory bacteria in non-HBC non-HCV related HCC patients are positively correlated with alcohol consumption
Schwimmer et al[109], 201987 NAFLD patients; 37 healthy controls NAFLD↑ Bacteroidetes; ↑ Proteobacteria; ↓ FirmicutesDecreased α-diversity in NAFLD was associated with differences in bacterial abundance rather than an increase in specific phyla or genus; increased bacterial pro-inflammatory products (LPS) were seen in patients with NAFLD
Duarte et al[110], 2019NASH patients; healthy controlsNASH↑ Bacteroides; ↑ Proteobacteria; ↑ Enterobacteriaceae; ↑ Escherichia; ↓ Firmicutes; ↓ Actinobacteria; ↑ Klebsiella pneumoniaeIncreased alcohol-producing bacteria supply a constant source of ROS which results in liver inflammation
Kravetz et al[111], 202044 NAFLD patients; 29 healthy controlsNAFLD↓ Bacteroidetes; ↓ Prevotella; ↓ Gemmiger; ↓ OscillospiraDecreased bacterial diversity in patients with NAFLD is associated with an increase in the rate of inflammation in NAFLD
Lang et al[65], 2020NAFLD patients and healthy controlsNAFLD↓ Virus and bacteriophage diversity; ↑ Escherichia; ↑ Enterobacteria; ↑ Lactobacillus phage
Lang et al[112], 2021NAFLD patients and healthy controlsNAFLD↑ Gemmiger; ↓ Faecalibacterium; ↓ Bacteroides; ↓ Prevotella
Behary et al[113], 202132 NAFLD-HCC patients; 28 NAFLD-cirrhosis patients; 30 non-NAFLD controls HCC↑ Proteobacteria; ↑ Enterobacteriaceae; ↑ Bacteroides xylanisolvens; ↑ B. caecimuris; ↑ Ruminococcus gnavus; ↑ Clostridium bolteae; ↑ Veillonella parvula; ↑ Bacteroides caecimuris; ↑ Veillonella parvula; ↑ Clostridium bolteae; ↑ Ruminococcus gnavus; ↓ Oscillospiraceae; ↓ Erysipelotrichaceae; ↓ Eubacteriaceae Increased B. caecimuris and Veillonella parvula distinguish NAFLD-HCC from NAFLD-cirrhosis and non-NAFLD controls; decreased gut microbial α-diversity and increased SCFAs serum levels in NAFLD-HCC result in immunosuppression
Trebicka et al[114], 2021Cirrhosis patients vs healthy controlsCirrhosis↑ Enterobacteriaceae; ↑ Alcaligenaceae; ↑ Streptococcaceae; ↑ Veillonellaceae; ↑ Fusobacteriaceae; ↓ Bacteroidetes; ↓ Ruminococcaceae; ↓ Lachnospiraceae Pathogenic organisms' overgrowth results in accelerated disease progression and endotoxemia which results in reduction of organisms that can produce SCFAs and anti-bacterial peptides
Solé et al[115], 2021182 cirrhosis patientsCirrhosis↑ Enterococcus; ↑ Streptococcus in ACLF; ↑ Faecalibacterium; ↑ Ruminococcus; ↑ Eubacterium in decompensated patientsAs cirrhosis progressed from compensated to uncompensated to ACLF, there was a marked reduction in metagenomic richness
Table 2 Potential therapeutic interventions targeting the gut-liver axis
Interventions
Mechanism of action
Targeted disease
Clinical outcomes
Ref.
Prebiotics (pectin)Restore Bacteroides levelAlcoholic liver diseaseControl dysbiosisFerrere et al[85], 2017
Prebiotics (Fructo-oligosaccharide)Promote fatty acid oxidationNAFLDReduced hepatocyte damage and inflammationMatsumoto et al[116], 2017
Probiotics (E. coli Nissle strain)↑ Lactobacillus species; ↑ Bifidobacterium species; ↓ Proteus hauseri; ↓ Citrobacter species; ↓ Morganella speciesCirrhosis (humans)Significant improvement in gut microbiome with decreased endotoxemia, bilirubin, and ascitesLata et al[117], 2007
Probiotics (Lactobacillus reuteri GMNL-263)↑ Bifidobacteria; ↑ Lactobacilli; ↓ ClostridiaHepatic steatosis (rats)↓ Blood glucose levels, TNF-α and IL-6 production by adipose tissue Hsieh et al[118], 2013
Probiotics ↑ Parabacteroide; ↑ Allisonella; ↓ Faecalibacterium; ↓ AnaerosporobacterNASH (humans)↑ Bacteroidetes ↓ FirmicutesWong et al[91], 2013
Probiotic: VSL#3 (8 probiotic mixture)GLP-1NAFLDDecrease BMI and increase GLP-1 and activated GLP1Alisi et al[119], 2014
Probiotics (VSL #3)↑ Lactobacillus speciesCirrhosis (humans)Reduced hospitalization due to HE with daily intake of probiotic for 6 moDhiman et al[120], 2014
Probiotics (Lactobacillus GG)↑ Firmicutes species; ↓ Enterobacteriaceae; ↓ Porphyromon adacea;Cirrhosis (humans)↓ Endotoxemia and TNF-α after 8 wk; ↓ dysbiosis due to decreased Enterobacteriaceae and increased Firmicutes speciesBajaj et al[95], 2014
Probiotics (cholesterol lowering probiotics and anthraquinone from Cassia obtusifolia L)↑ Bacteroides; ↑ Lactobacillus P; ↑ Arabacteroides; ↓ OscillospiraNAFLD (rats)Improve intestinal barrier and decrease endotoxemia and inflammatory cytokinesMei et al[121], 2015
Probiotics (Prohep: Lactobacillus rhamnosus GG (LGG), viable Escherichia coli Nissle 1917 (EcN), and heat-inactivated VSL#3)↑ Alistipes; ↑ Butyricimonas; ↑ Mucispirillum; ↑ Oscillibacter; ↑ Parabacteroides; ↑ Paraprevotella; ↑ Prevotella; ↑ Bacteroidetes; ↓ Firmicutes; ↓ ProteobacteriaHCC (mice)↑ Anti-inflammatory bacteria; ↓ Th17-inducing bacteria and segmented filamentous pro inflammatory bacteriaLi et al[77], 2016
Probiotics↑ Ruminococcus; ↑ Saccharibacteria (TM7 phylum); ↓ Verrucomicrobia; ↓ VeillonellaNAFLD
(rats)
↓ TC, TG, lipid deposition, and inflammationLiang et al[122], 2019
Six probiotic mixturesGut microbiotaNAFLDReduce intrahepatic fat and body weightAhn et al[123], 2019
Probiotics (multispecies strain)↑ Lactobacillus (brevis, salivarius, lactis); ↑ Faecalibacterium prausnitzii; ↑ Syntrophococcus sucromutans; ↑ Alistipes shahii; ↑ Bacteroides vulgatus; ↑ PrevotellaCirrhosis
(humans)
Gut microbiome enrichment in compensated cirrhosis patients and improved gut barrier functionHorvath et al[124], 2020
Probiotics (Bifidobacterium animalis spp. Lactis 420)↑ Lactobacillus; ↑ Alistipes; ↑ Rikenella; ↑ Clostridia; ↓ Bacteroides; ↓ RuminococcusHCC
(Mice)
Reduced liver injury and improved immune homeostasis via: Increment in tight junction proteins; ↓ Serum endotoxin levels; ↑ fecal SCFAs; ↑ α-diversity regulation of pro-inflammatory cytokines; (-) RIP3-MLKL signalling pathway of liver macrophagesZhang et al[125], 2020
Probiotics (Bifidobacterium and Lactobacillus)↑ Bacteroidetes; ↑ Bifidobacterium; ↑ Bacteroides; ↑ Clostridium; ↑ Ruminococcus; ↑ Anaerostipes; ↑ Blautia; ↓ Firmicutes; ↓ Faecalibacterium; ↓ Helicobacter; ↓ StaphylococcusHCC
(Mice)
↑ Treg cell differentiation; ↑ SCFAs; ↓ infiltration of inflammatory cells in the liver; ↓ ALT, AST; ↓ Th1, Th17 cells; (-) LPS translocation to the liver; (-) activation of the TLR/NF-kB pathwayLiu et al[126], 2021
ProbioticGut barrierNAFLDMohamad et al[127], 2021
FMT↑ Lactobacillaceae; ↑ Bifidobacteriaceae; ↑ Bacteroidetes; ↑ FirmicutesHEImproves dysbiosis and SCFAsBajaj et al[86], (2017)
FMTGut microbiotaCirrhosisReduced systemic inflammationBajaj et al[128], 2019
FMTAllogenic FMT: ↑ Ruminococcus ↑ Eubacterium hallii; ↑ Faecalibacterium; ↑ Prevotella copri; Autologous FMT: ↑ LachnospiraceaeNAFLDDecreased steatosis and liver inflammation and enhanced liver endothelial functionWitjes et al[129], 2020
FMTGut microbiotaNAFLDReduced intestinal permeabilityCraven et al[130], 2020
FMT↑ Bifidobacterium; ↑ Lactobacillus; ↓ Escherichia coliHCCDecreased AST, ALT, and serum IgG levels and prevented progression of alcohol induced hepatitisLiang et al[131], 2021
FMTGut microbiotaNAFLDReduces gut dysbiosis and decreases fat accumulationXue et al[132], 2022
Synbiotics [Bifidobacterium longum and Fructo-oligosaccharide]Gut microbiotaNASHReduced liver inflammation and hepatocyte damageMalaguarnera et al[84], 2012
Synbiotics
[Bifidobacterium animalis and inulin]
Gut microbiotaNAFLDImproved steatosis and liver enzyme levelsLambert et al[133], 2015
SynbioticsGut microbiotaNAFLDIncreased levels of Bifidobacterium and Faecalibacterium, and decreased Oscillibacter and AlistipesScorletti et al[134], 2020