Copyright
©The Author(s) 2023.
World J Hepatol. Sep 27, 2023; 15(9): 1043-1059
Published online Sep 27, 2023. doi: 10.4254/wjh.v15.i9.1043
Published online Sep 27, 2023. doi: 10.4254/wjh.v15.i9.1043
Table 1 Demographic and clinical data of patients and volunteers in training set and validation set
Training set (n = 105) | Validation set (n = 45) | |||||||||
F-R (n = 23) | F-N (n = 23) | E-R (n = 23) | E-N (n = 23) | NOR (n = 13) | F-R (n = 10) | F-N (n = 10) | E-R (n = 10) | E-N (n = 10) | NOR (n = 5) | |
Male/Female | 15/8 | 15/8 | 16/7 | 17/6 | 9/4 | 7/3 | 10/0 | 6/4 | 8/2 | 4/1 |
Age (yr) | 44.17 ± 6.25 | 42.43 ± 8.36 | 40.65 ± 7.73 | 42.22 ± 7.97 | 36.92 ± 6.18 | 42.80 ± 5.01 | 38.10 ± 11.95 | 45.00 ± 7.93 | 47.40 ± 10.44 | 37.80 ± 8.79 |
BMI (kg/m2) | 23.60 ± 2.56 | 23.64 ± 3.17 | 23.54 ± 2.06 | 23.92 ± 2.73 | 24.20 ± 1.34 | 23.22 ± 3.30 | 24.76 ± 1.65 | 24.61 ± 2.29 | 23.16 ± 3.86 | 22.60 ± 1.71 |
ALT (IU/L) | 42.52 ± 29.59 | 41.03 ± 20.48 | 68.91 ± 89.81 | 47.34 ± 27.83 | / | 49.80 ± 50.83 | 48.80 ± 33.14 | 57.08 ± 46.97 | 58.33 ± 73.02 | / |
AST (IU/L) | 40.50 ± 21.35 | 41.80 ± 19.41 | 53.47 ± 51.20 | 50.53 ± 27.59 | / | 38.71 ± 16.39 | 47.75 ± 28.32 | 77.64 ± 120.70 | 48.73 ± 35.54 | / |
ALB (IU/L) | 43.84 ± 5.50 | 41.43 ± 6.07 | 43.51 ± 5.75 | 42.22 ± 4.61 | / | 42.40 ± 5.08 | 35.70 ± 6.67 | 39.68 ± 5.95 | 41.53 ± 4.64 | / |
TBIL (μmol/L) | 16.15 ± 10.88 | 13.27 ± 6.36 | 13.36 ± 9.25 | 14.16 ± 6.51 | / | 11.98 ± 4.90 | 24.49 ± 16.83 | 22.08 ± 13.61 | 12.18 ± 5.79 | / |
Cr (μmol/L) | 64.43 ± 17.03 | 66.39 ± 11.99 | 69.57 ± 16.59 | 64.57 ± 14.67 | / | 72.80 ± 18.27 | 71.10 ± 9.71 | 65.80 ± 13.70 | 83.60 ± 25.07 | / |
PT (S) | 13.22 ± 1.48 | 13.23 ± 1.41 | 13.31 ± 1.46 | 13.78 ± 1.52 | / | 13.21 ± 1.32 | 14.27 ± 2.90 | 14.10 ± 1.33 | 13.88 ± 1.83 | / |
PLT (× 10 ×9/L) | 119.02 ± 49.99 | 113.47 ± 61.33 | 131.70 ± 49.26 | 104.65 ± 41.65 | / | 145.10 ± 64.42 | 112.00 ± 36.18 | 98.88 ± 45.13 | 106.40 ± 37.97 | / |
AFP (ng/ml) | 23.70 ± 59.55 | 12.46 ± 13.22 | 18.63 ± 42.03 | 14.75 ± 15.56 | / | 16.73 ± 31.93 | 54.81 ± 93.15 | 25.25 ± 41.79 | 14.86 ± 15.91 | / |
FIB-4 | 2.99 ± 2.06 | 3.31 ± 2.38 | 2.54 ± 1.62 | 3.46 ± 1.75 | / | 2.29 ± 1.95 | 2.72 ± 1.51 | 5.63 ± 8.14 | 3.55 ± 1.89 | / |
APRI | 1.10 ± 0.96 | 1.23 ± 0.95 | 1.40 ± 1.60 | 1.31 ± 0.73 | / | 0.81 ± 0.54 | 1.18 ± 0.84 | 3.17 ± 6.23 | 1.28 ± 0.92 | / |
Ishak score | 5.48 ± 0.51 | 5.43 ± 0.51 | 5.35 ± 0.49 | 5.39 ± 0.50 | / | 5.40 ± 0.52 | 5.40 ± 0.52 | 5.50 ± 0.53 | 5.10 ± 0.32 | / |
Table 2 The selected potential metabolites in training set and validation set
Class | HMDB | KEGG | Metabolite | Uni_P | Uni_FDR | FC | log2FC | OPLSDA_VIP |
Training set | ||||||||
Fatty acids | HMDB0000448 | C06104 | Adipic acid | 0.03 | 1.00 | 0.77 | -0.37 | 1.65 |
Organic acids | HMDB0000176 | C01384 | Maleic acid | 0.04 | 1.00 | 0.84 | -0.25 | 1.73 |
Fatty acids | HMDB0060038 | NA | 10Z-Heptadecenoic acid | 0.01 | 0.31 | 3.10 | 1.63 | 1.90 |
HMDB0002925 | C03242 | Dihomo-gamma-linolenic acid | 0.02 | 0.32 | 2.08 | 1.05 | 1.60 | |
HMDB0001043 | C00219 | Arachidonic acid | 0.04 | 0.44 | 1.70 | 0.76 | 1.79 | |
HMDB0002183 | C06429 | DHA | 0.02 | 0.32 | 1.85 | 0.89 | 2.03 | |
HMDB0006528 | C16513 | DPA | 0.01 | 0.31 | 1.55 | 0.63 | 1.99 | |
HMDB0001999 | C06428 | EPA | 0.02 | 0.32 | 1.54 | 0.62 | 1.70 | |
Organic acids | HMDB0000700 | C01013 | Hydroxypropionic acid | 0.01 | 0.31 | 1.27 | 0.35 | 1.21 |
Fatty acids | HMDB0000673 | C01595 | Linoleic acid | 0.05 | 0.44 | 1.39 | 0.47 | 1.54 |
Carnitines | HMDB0006469 | NA | Linoleylcarnitine | 0.01 | 0.31 | 1.40 | 0.49 | 2.16 |
Fatty acids | HMDB0000806 | C06424 | Myristic acid | 0.01 | 0.31 | 1.61 | 0.69 | 1.76 |
HMDB0000207 | C00712 | Oleic acid | 0.02 | 0.32 | 1.45 | 0.54 | 1.86 | |
Carnitines | HMDB0005065 | NA | Oleylcarnitine | 0.01 | 0.31 | 1.21 | 0.28 | 2.32 |
Fatty acids | HMDB0003229 | C08362 | Palmitoleic acid | 0.02 | 0.31 | 1.53 | 0.61 | 1.62 |
HMDB0000826 | C16537 | Pentadecanoic acid | 0.03 | 0.42 | 1.51 | 0.60 | 1.51 | |
Benzenoids | HMDB0000205 | C00166 | Phenylpyruvic acid | 0.04 | 0.44 | 0.86 | -0.22 | 0.85 |
Carnitines | HMDB0013128 | NA | Valerylcarnitine | 0.02 | 0.31 | 1.21 | 0.27 | 1.47 |
Organic acids | HMDB0000617 | C01546 | 2-Furoic acid | 0.00 | 0.00 | 148.12 | 7.21 | 2.10 |
Phenylpropanoic acids | HMDB0011743 | NA | 2-Phenylpropionate | 0.01 | 0.04 | 2.89 | 1.53 | 1.26 |
Organic acids | HMDB0000357 | C01089 | 3-Hydroxybutyric acid | 0.04 | 0.20 | 0.56 | -0.83 | 0.59 |
Fatty acids | HMDB0000555 | NA | 3-Methyladipic acid | 0.05 | 0.22 | 0.95 | -0.07 | 2.09 |
HMDB0001043 | C00219 | Arachidonic acid | 0.00 | 0.01 | 0.66 | -0.60 | 2.11 | |
HMDB0000784 | C08261 | Azelaic acid | 0.05 | 0.22 | 1.07 | 0.10 | 0.86 | |
Organic acids | HMDB0001870 | C00180 | Benzoic acid | 0.00 | 0.00 | 346.31 | 8.44 | 2.42 |
Bile acids | HMDB0000686 | C17662 | bUDCA | 0.00 | 0.02 | 0.64 | -0.64 | 1.37 |
SCFAs | HMDB0000039 | C00246 | Butyric acid | 0.00 | 0.00 | 3.72 | 1.89 | 2.54 |
Carnitines | HMDB0002013 | C02862 | Butyrylcarnitine | 0.00 | 0.02 | 0.55 | -0.87 | 1.80 |
Bile acids | HMDB0000619 | C00695 | CA | 0.02 | 0.16 | 1.42 | 0.51 | 1.27 |
Organic acids | HMDB0000072 | C02341 | Aconitic acid | 0.00 | 0.01 | 1.37 | 0.46 | 0.76 |
HMDB0000094 | C00158 | Citric acid | 0.00 | 0.02 | 1.21 | 0.27 | 1.31 | |
Carbohydrates | HMDB0000122 | C00221 | Glucose | 0.05 | 0.22 | 1.10 | 0.14 | 0.75 |
Carnitines | HMDB0000651 | NA | Decanoylcarnitine | 0.01 | 0.06 | 0.52 | -0.94 | 0.55 |
Amino acids | HMDB0000092 | C01026 | Dimethylglycine | 0.00 | 0.03 | 1.27 | 0.35 | 0.90 |
Amino acids | HMDB0000112 | C00334 | GABA | 0.01 | 0.05 | 1.17 | 0.23 | 0.46 |
HMDB0000123 | C00037 | Glycine | 0.04 | 0.19 | 1.18 | 0.23 | 1.07 | |
Bile acids | HMDB0000637 | C05466 | GCDCA | 0.00 | 0.00 | 6.42 | 2.68 | 2.30 |
Organic acids | HMDB0000115 | C00160 | Glycolic acid | 0.03 | 0.18 | 1.26 | 0.33 | 1.03 |
Fatty acids | HMDB0000666 | C17714 | Heptanoic acid | 0.03 | 0.19 | 1.30 | 0.38 | 1.07 |
Phenols | HMDB0000118 | C05582 | Homovanillic acid | 0.00 | 0.01 | 1.26 | 0.33 | 2.40 |
Phenylpropanoic acids | HMDB0000764 | C05629 | Hydrocinnamic acid | 0.00 | 0.03 | 2.71 | 1.44 | 1.23 |
HMDB0000755 | C03672 | Hydroxyphenyllactic acid | 0.00 | 0.01 | 1.44 | 0.53 | 2.20 | |
Organic acids | HMDB0000193 | C00311 | Isocitric acid | 0.05 | 0.22 | 1.39 | 0.48 | 0.65 |
Amino Acids | HMDB0000168 | C00152 | Asparagine | 0.03 | 0.19 | 1.07 | 0.10 | 1.85 |
HMDB0000719 | C00263 | Homoserine | 0.04 | 0.19 | 1.20 | 0.26 | 1.41 | |
HMDB0000696 | C00073 | Methionine | 0.00 | 0.04 | 1.23 | 0.30 | 1.59 | |
HMDB0000716 | C00408 | Pipecolic acid | 0.02 | 0.11 | 1.20 | 0.26 | 0.98 | |
HMDB0000158 | C00082 | Tyrosine | 0.00 | 0.00 | 1.54 | 0.62 | 2.51 | |
Carnitines | HMDB0000791 | C02838 | Octanoylcarnitine | 0.03 | 0.19 | 0.75 | -0.42 | 0.57 |
Phenylpropanoic acids | HMDB0000779 | NA | Phenyllactic acid | 0.00 | 0.04 | 2.81 | 1.49 | 1.44 |
SCFAs | HMDB0000237 | C00163 | Propionic acid | 0.00 | 0.00 | 2.70 | 1.43 | 3.00 |
Bile Acids | HMDB0000951 | C05465 | TCDCA | 0.00 | 0.00 | 11.04 | 3.47 | 1.80 |
HMDB0000036 | C05122 | TCA | 0.00 | 0.03 | 13.19 | 3.72 | 1.55 | |
Validation set | ||||||||
Carnitines | HMDB0000062 | C00318 | Carnitine | 0.04 | 0.65 | 0.80 | -0.31 | 1.73 |
Fatty acids | HMDB0001976 | NA | DPAn-6 | 0.04 | 0.65 | 1.79 | 0.84 | 2.00 |
HMDB0003073 | C06426 | gamma-Linolenic acid | 0.01 | 0.59 | 3.84 | 1.94 | 2.54 | |
Amino acids | HMDB0000123 | C00037 | Glycine | 0.03 | 0.65 | 0.85 | -0.24 | 1.60 |
Peptides | HMDB0000721 | NA | Glycylproline | 0.01 | 0.59 | 0.85 | -0.24 | 1.59 |
Amino acids | HMDB0000168 | C00152 | Asparagine | 0.02 | 0.65 | 0.85 | -0.24 | 1.41 |
HMDB0000162 | C00148 | Proline | 0.01 | 0.59 | 0.52 | -0.94 | 1.53 | |
Fatty acids | HMDB0006270 | NA | Linoelaidic acid | 0.00 | 0.06 | 2.15 | 1.10 | 2.62 |
HMDB0002925 | C03242 | Dihomo-gamma-linolenic acid | 0.04 | 0.80 | 1.65 | 0.72 | 1.39 | |
HMDB0001043 | C00219 | Arachidonic acid | 0.05 | 0.80 | 1.42 | 0.51 | 1.59 | |
Organic acids | HMDB0000700 | C01013 | Hydroxypropionic acid | 0.04 | 0.80 | 0.47 | -1.08 | 2.07 |
Amino acids | HMDB0000168 | C00152 | Asparagine | 0.02 | 0.80 | 0.81 | -0.31 | 2.66 |
HMDB0000191 | C00049 | Aspartic acid | 0.01 | 0.80 | 1.55 | 0.63 | 2.29 | |
HMDB0000158 | C00082 | Tyrosine | 0.03 | 0.80 | 0.72 | -0.47 | 2.51 | |
Phenylpropanoic acids | HMDB0000779 | NA | Phenyllactic acid | 0.03 | 0.80 | 0.60 | -0.75 | 2.14 |
Organic acids | HMDB0000617 | C01546 | 2-Furoic acid | 0.00 | 0.02 | 148.81 | 7.22 | 1.66 |
Phenylpropanoic acids | HMDB0011743 | NA | 2-Phenylpropionate | 0.00 | 0.02 | 13.73 | 3.78 | 1.90 |
Fatty acids | HMDB0001043 | C00219 | Arachidonic acid | 0.02 | 0.17 | 0.69 | -0.53 | 1.88 |
Organic acids | HMDB0001870 | C00180 | Benzoic acid | 0.00 | 0.02 | 715.57 | 9.48 | 1.71 |
SCFAs | HMDB0000039 | C00246 | Butyric acid | 0.00 | 0.05 | 7.84 | 2.97 | 1.80 |
Organic acids | HMDB0000072 | C02341 | Aconitic acid | 0.00 | 0.06 | 1.60 | 0.68 | 1.90 |
HMDB0000094 | C00158 | Citric acid | 0.00 | 0.02 | 1.54 | 0.62 | 2.32 | |
Amino acids | HMDB0000092 | C01026 | Dimethylglycine | 0.00 | 0.02 | 1.65 | 0.72 | 0.97 |
Bile acids | HMDB0000637 | C05466 | GCDCA | 0.00 | 0.02 | 12.69 | 3.67 | 1.53 |
Phenols | HMDB0000118 | C05582 | Homovanillic acid | 0.00 | 0.03 | 1.51 | 0.59 | 2.32 |
Phenylpropanoic acids | HMDB0000764 | C05629 | Hydrocinnamic acid | 0.00 | 0.03 | 7.97 | 2.99 | 1.88 |
HMDB0000755 | C03672 | Hydroxyphenyllactic acid | 0.03 | 0.25 | 1.63 | 0.70 | 2.10 | |
Organic acids | HMDB0000193 | C00311 | Isocitric acid | 0.00 | 0.06 | 2.32 | 1.21 | 1.29 |
Amino acids | HMDB0000641 | C00064 | Glutamine | 0.04 | 0.27 | 1.26 | 0.33 | 1.85 |
HMDB0000684 | C00328 | Kynurenine | 0.02 | 0.15 | 1.53 | 0.61 | 0.95 | |
HMDB0000158 | C00082 | Tyrosine | 0.00 | 0.01 | 1.46 | 0.55 | 2.23 | |
HMDB0002931 | NA | N-acetylserine | 0.03 | 0.21 | 1.18 | 0.24 | 0.83 | |
Fatty acids | HMDB0003229 | C08362 | Palmitoleic acid | 0.03 | 0.25 | 1.60 | 0.68 | 1.07 |
Phenylpropanoic acids | HMDB0000779 | NA | Phenyllactic acid | 0.03 | 0.25 | 20.79 | 4.38 | 1.84 |
Benzoic acids | HMDB0002107 | C01606 | Phthalic acid | 0.01 | 0.14 | 1.33 | 0.41 | 2.21 |
SCFAs | HMDB0000237 | C00163 | Propionic acid | 0.01 | 0.08 | 4.41 | 2.14 | 2.19 |
Bile acids | HMDB0000951 | C05465 | TCDCA | 0.00 | 0.00 | 9.63 | 3.27 | 1.75 |
HMDB0000036 | C05122 | TCA | 0.01 | 0.09 | 9.75 | 3.28 | 1.54 |
- Citation: Dai YK, Fan HN, Huang K, Sun X, Zhao ZM, Liu CH. Baseline metabolites could predict responders with hepatitis B virus-related liver fibrosis for entecavir or combined with FuzhengHuayu tablet. World J Hepatol 2023; 15(9): 1043-1059
- URL: https://www.wjgnet.com/1948-5182/full/v15/i9/1043.htm
- DOI: https://dx.doi.org/10.4254/wjh.v15.i9.1043