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For: Oniciuc EA, Likotrafiti E, Alvarez-Molina A, Prieto M, Santos JA, Alvarez-Ordóñez A. The Present and Future of Whole Genome Sequencing (WGS) and Whole Metagenome Sequencing (WMS) for Surveillance of Antimicrobial Resistant Microorganisms and Antimicrobial Resistance Genes across the Food Chain. Genes (Basel) 2018;9:E268. [PMID: 29789467 DOI: 10.3390/genes9050268] [Cited by in Crossref: 52] [Cited by in F6Publishing: 36] [Article Influence: 13.0] [Reference Citation Analysis]
Number Citing Articles
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2 Richter L, du Plessis EM, Duvenage S, Allam M, Ismail A, Korsten L. Whole Genome Sequencing of Extended-Spectrum- and AmpC- β-Lactamase-Positive Enterobacterales Isolated From Spinach Production in Gauteng Province, South Africa. Front Microbiol 2021;12:734649. [PMID: 34659162 DOI: 10.3389/fmicb.2021.734649] [Reference Citation Analysis]
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6 Oniciuc EA, Likotrafiti E, Alvarez-Molina A, Prieto M, Santos JA, Alvarez-Ordóñez A. Correction: Oniciuc, E. A.; et al. The Present and Future of Whole Genome Sequencing (WGS) and Whole Metagenome Sequencing (WMS) for Surveillance of Antimicrobial Resistant Microorganisms and Antimicrobial Resistance Genes across the Food Chain. Genes 2018, 9, 268. Genes (Basel) 2018;9:E315. [PMID: 29941843 DOI: 10.3390/genes9070315] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 0.8] [Reference Citation Analysis]
7 Haas CN. Quantitative Microbial Risk Assessment and Molecular Biology: Paths to Integration. Environ Sci Technol 2020;54:8539-46. [PMID: 32539352 DOI: 10.1021/acs.est.0c00664] [Cited by in Crossref: 9] [Cited by in F6Publishing: 6] [Article Influence: 4.5] [Reference Citation Analysis]
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9 Kaprou GD, Bergšpica I, Alexa EA, Alvarez-Ordóñez A, Prieto M. Rapid Methods for Antimicrobial Resistance Diagnostics. Antibiotics (Basel) 2021;10:209. [PMID: 33672677 DOI: 10.3390/antibiotics10020209] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 3.0] [Reference Citation Analysis]
10 Alvarez-Molina A, Cobo-Díaz JF, López M, Prieto M, de Toro M, Alvarez-Ordóñez A. Unraveling the emergence and population diversity of Listeria monocytogenes in a newly built meat facility through whole genome sequencing. Int J Food Microbiol 2021;340:109043. [PMID: 33454520 DOI: 10.1016/j.ijfoodmicro.2021.109043] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
11 Van Reckem E, De Vuyst L, Weckx S, Leroy F. Next-generation sequencing to enhance the taxonomic resolution of the microbiological analysis of meat and meat-derived products. Current Opinion in Food Science 2021;37:58-65. [DOI: 10.1016/j.cofs.2020.09.004] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 3.0] [Reference Citation Analysis]
12 Li S, Mann DA, Zhang S, Qi Y, Meinersmann RJ, Deng X. Microbiome-Informed Food Safety and Quality: Longitudinal Consistency and Cross-Sectional Distinctiveness of Retail Chicken Breast Microbiomes. mSystems 2020;5:e00589-20. [PMID: 32900871 DOI: 10.1128/mSystems.00589-20] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.5] [Reference Citation Analysis]
13 Dillard LR, Payne DD, Papin JA. Mechanistic models of microbial community metabolism. Mol Omics 2021;17:365-75. [PMID: 34125127 DOI: 10.1039/d0mo00154f] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
14 Payumo J, Alocilja E, Boodoo C, Luchini-colbry K, Ruegg P, Mclamore E, Vanegas D, Briceno RK, Castaneda-sabogal A, Watanabe K, Gordoncillo MJ, Amalin D, Fernando L, Bhusal N. Next Generation of AMR Network. Encyclopedia 2021;1:871-92. [DOI: 10.3390/encyclopedia1030067] [Reference Citation Analysis]
15 Al Amin M, Pasha MH, Hoque MN, Siddiki AZ, Saha S, Kamal MM. Methodology for laboratory-based antimicrobial resistance surveillance in animals. Vet World. [DOI: 10.14202/vetworld.2022.1066-1079] [Reference Citation Analysis]
16 Win AT, Supa-Amornkul S, Orsi RH, Carey JH, Wolfgang WJ, Chaturongakul S. Sequence Analyses and Phenotypic Characterization Revealed Multidrug Resistant Gene Insertions in the Genomic Region Encompassing Phase 2 Flagellin Encoding fljAB Genes in Monophasic Variant Salmonella enterica Serovar 4,5,12:i:- Isolates From Various Sources in Thailand. Front Microbiol 2021;12:720604. [PMID: 34675896 DOI: 10.3389/fmicb.2021.720604] [Reference Citation Analysis]
17 Lerner A, Shoenfeld Y, Matthias T. Probiotics: If It Does Not Help It Does Not Do Any Harm. Really? Microorganisms. 2019;7:104. [PMID: 30979072 DOI: 10.3390/microorganisms7040104] [Cited by in Crossref: 34] [Cited by in F6Publishing: 24] [Article Influence: 11.3] [Reference Citation Analysis]
18 Shelenkov A. Whole-Genome Sequencing of Pathogenic Bacteria-New Insights into Antibiotic Resistance Spreading. Microorganisms 2021;9:2624. [PMID: 34946225 DOI: 10.3390/microorganisms9122624] [Reference Citation Analysis]
19 Kim S, Kim H, Kim Y, Kim M, Kwak H, Ryu S. Whole-Genome Sequencing-Based Characteristics in Extended-Spectrum Beta-Lactamase-Producing Escherichia coli Isolated from Retail Meats in Korea. Microorganisms 2020;8:E508. [PMID: 32252466 DOI: 10.3390/microorganisms8040508] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
20 McAuliffe GN, Tse F, Qiao H, Moore S, Bissessor L, Thompson B, McLaughlin V, Upton A, Taylor SL. Isolate independent molecular typing improves the yield of O typing of infections due to Shiga toxin producing Escherichia coli. Pathology 2020;52:460-5. [PMID: 32317174 DOI: 10.1016/j.pathol.2020.02.008] [Reference Citation Analysis]
21 Gaye A, Sy M, Ndiaye T, Siddle KJ, Park DJ, Deme AB, Mbaye A, Dieye B, Ndiaye YD, Neafsey DE, Early A, Farrell T, Yade MS, Diallo MA, Diongue K, Bei A, Ndiaye IM, Volkman SK, Badiane AS, Ndiaye D. Amplicon deep sequencing of kelch13 in Plasmodium falciparum isolates from Senegal. Malar J 2020;19:134. [PMID: 32228566 DOI: 10.1186/s12936-020-03193-w] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
22 Koutsoumanis K, Allende A, Alvarez-Ordóñez A, Bolton D, Bover-Cid S, Chemaly M, Davies R, De Cesare A, Hilbert F, Lindqvist R, Nauta M, Peixe L, Ru G, Simmons M, Skandamis P, Suffredini E, Jenkins C, Malorny B, Ribeiro Duarte AS, Torpdahl M, da Silva Felício MT, Guerra B, Rossi M, Herman L; EFSA Panel on Biological Hazards (EFSA BIOHAZ Panel). Whole genome sequencing and metagenomics for outbreak investigation, source attribution and risk assessment of food-borne microorganisms. EFSA J 2019;17:e05898. [PMID: 32626197 DOI: 10.2903/j.efsa.2019.5898] [Cited by in Crossref: 19] [Cited by in F6Publishing: 21] [Article Influence: 6.3] [Reference Citation Analysis]
23 Vieira KCO, Silva HRAD, Rocha IPM, Barboza E, Eller LKW. Foodborne pathogens in the omics era. Crit Rev Food Sci Nutr 2021;:1-16. [PMID: 33783282 DOI: 10.1080/10408398.2021.1905603] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
24 van der Graaf-van Bloois L, Wagenaar JA, Zomer AL. RFPlasmid: predicting plasmid sequences from short-read assembly data using machine learning. Microb Genom 2021;7. [PMID: 34846288 DOI: 10.1099/mgen.0.000683] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
25 Späth GF, Bussotti G. GIP: an open-source computational pipeline for mapping genomic instability from protists to cancer cells. Nucleic Acids Res 2021:gkab1237. [PMID: 34928370 DOI: 10.1093/nar/gkab1237] [Reference Citation Analysis]
26 Aslam B, Khurshid M, Arshad MI, Muzammil S, Rasool M, Yasmeen N, Shah T, Chaudhry TH, Rasool MH, Shahid A, Xueshan X, Baloch Z. Antibiotic Resistance: One Health One World Outlook. Front Cell Infect Microbiol 2021;11:771510. [PMID: 34900756 DOI: 10.3389/fcimb.2021.771510] [Reference Citation Analysis]
27 Jebri S, Rahmani F, Hmaied F. Bacteriophages as antibiotic resistance genes carriers in agro-food systems. J Appl Microbiol 2021;130:688-98. [PMID: 32916015 DOI: 10.1111/jam.14851] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
28 Collineau L, Boerlin P, Carson CA, Chapman B, Fazil A, Hetman B, McEwen SA, Parmley EJ, Reid-Smith RJ, Taboada EN, Smith BA. Integrating Whole-Genome Sequencing Data Into Quantitative Risk Assessment of Foodborne Antimicrobial Resistance: A Review of Opportunities and Challenges. Front Microbiol 2019;10:1107. [PMID: 31231317 DOI: 10.3389/fmicb.2019.01107] [Cited by in Crossref: 29] [Cited by in F6Publishing: 21] [Article Influence: 9.7] [Reference Citation Analysis]
29 Hoque MN, Istiaq A, Rahman MS, Islam MR, Anwar A, Siddiki AMAMZ, Sultana M, Crandall KA, Hossain MA. Microbiome dynamics and genomic determinants of bovine mastitis. Genomics 2020;112:5188-203. [PMID: 32966856 DOI: 10.1016/j.ygeno.2020.09.039] [Cited by in Crossref: 10] [Cited by in F6Publishing: 8] [Article Influence: 5.0] [Reference Citation Analysis]
30 Cunningham-oakes E, Trivett H. Applied Bioinformatics and Public Health Microbiology: challenges, discoveries and innovations during a pandemic. Microbial Genomics 2022;8. [DOI: 10.1099/mgen.0.000757] [Reference Citation Analysis]
31 Dewi DAPR, Götz B, Thomas T. Diversity and Genetic Basis for Carbapenem Resistance in a Coastal Marine Environment. Appl Environ Microbiol 2020;86:e02939-19. [PMID: 32198174 DOI: 10.1128/AEM.02939-19] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
32 Muthuirulandi Sethuvel DP, Devanga Ragupathi NK, Bakthavatchalam YD, Vijayakumar S, Varghese R, Shankar C, Jacob JJ, Vasudevan K, Elangovan D, Balaji V. Current strategy for local- to global-level molecular epidemiological characterisation of global antimicrobial resistance surveillance system pathogens. Indian J Med Microbiol 2019;37:147-62. [PMID: 31745014 DOI: 10.4103/ijmm.IJMM_19_396] [Reference Citation Analysis]
33 S P Galhano B, G Ferrari R, Panzenhagen P, S de Jesus AC, A Conte-Junior C. Antimicrobial Resistance Gene Detection Methods for Bacteria in Animal-Based Foods: A Brief Review of Highlights and Advantages. Microorganisms 2021;9:923. [PMID: 33925810 DOI: 10.3390/microorganisms9050923] [Reference Citation Analysis]
34 Chelliah R, Banan-MwineDaliri E, Khan I, Wei S, Elahi F, Yeon SJ, Selvakumar V, Ofosu FK, Rubab M, Ju HH, Rallabandi HR, Madar IH, Sultan G, Oh DH. A review on the application of bioinformatics tools in food microbiome studies. Brief Bioinform 2022:bbac007. [PMID: 35189636 DOI: 10.1093/bib/bbac007] [Reference Citation Analysis]
35 Jacob JJ, Veeraraghavan B, Vasudevan K. Metagenomic next-generation sequencing in clinical microbiology. Indian J Med Microbiol 2019;37:133-40. [PMID: 31745012 DOI: 10.4103/ijmm.IJMM_19_401] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 1.5] [Reference Citation Analysis]
36 Sahakyan N, Petrosyan M, Trchounian A. The Activity of Alkanna Species in vitro Culture and Intact Plant Extracts Against Antibiotic Resistant Bacteria. Curr Pharm Des 2019;25:1861-5. [PMID: 31333091 DOI: 10.2174/1381612825666190716112510] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]
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39 Pholwat S, Liu J, Taniuchi M, Chinli R, Pongpan T, Thaipisutikul I, Ratanakorn P, Platts-Mills JA, Fleece M, Stroup S, Gratz J, Mduma E, Mujaga B, Walongo T, Nshama R, Kimathi C, Foongladda S, Houpt ER. Genotypic antimicrobial resistance assays for use on E. coli isolates and stool specimens. PLoS One 2019;14:e0216747. [PMID: 31075137 DOI: 10.1371/journal.pone.0216747] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 2.3] [Reference Citation Analysis]
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41 Paintsil EK, Ofori LA, Akenten CW, Fosu D, Ofori S, Lamshöft M, May J, Danso KO, Krumkamp R, Dekker D. Antimicrobial Usage in Commercial and Domestic Poultry Farming in Two Communities in the Ashanti Region of Ghana. Antibiotics (Basel) 2021;10:800. [PMID: 34209451 DOI: 10.3390/antibiotics10070800] [Reference Citation Analysis]
42 Rivas L, Dupont PY, Gilpin B, Withers H. Prevalence and Genotyping of Campylobacter jejuni and Campylobacter coli from Ovine Carcasses in New Zealand. J Food Prot 2021;84:14-22. [PMID: 32766835 DOI: 10.4315/JFP-20-220] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
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44 D. Carrillo C, Koziol A, Vary N, W. Blais B. Applications of Genomics in Regulatory Food Safety Testing in Canada. In: Ranjbar M, Nojomi M, T. Mascellino M, editors. New Insight into Brucella Infection and Foodborne Diseases. IntechOpen; 2020. [DOI: 10.5772/intechopen.86063] [Cited by in Crossref: 4] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
45 Barretto C, Rincón C, Portmann AC, Ngom-Bru C. Whole Genome Sequencing Applied to Pathogen Source Tracking in Food Industry: Key Considerations for Robust Bioinformatics Data Analysis and Reliable Results Interpretation. Genes (Basel) 2021;12:275. [PMID: 33671973 DOI: 10.3390/genes12020275] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]