BPG is committed to discovery and dissemination of knowledge
Cited by in F6Publishing
For: Zhang C, Zhao L. Strain-level dissection of the contribution of the gut microbiome to human metabolic disease. Genome Med 2016;8:41. [PMID: 27098841 DOI: 10.1186/s13073-016-0304-1] [Cited by in Crossref: 51] [Cited by in F6Publishing: 49] [Article Influence: 8.5] [Reference Citation Analysis]
Number Citing Articles
1 Zhou W, Spoto M, Hardy R, Guan C, Fleming E, Larson PJ, Brown JS, Oh J. Host-Specific Evolutionary and Transmission Dynamics Shape the Functional Diversification of Staphylococcus epidermidis in Human Skin. Cell 2020;180:454-470.e18. [PMID: 32004459 DOI: 10.1016/j.cell.2020.01.006] [Cited by in Crossref: 19] [Cited by in F6Publishing: 19] [Article Influence: 9.5] [Reference Citation Analysis]
2 Scotti E, Boué S, Sasso GL, Zanetti F, Belcastro V, Poussin C, Sierro N, Battey J, Gimalac A, Ivanov NV, Hoeng J. Exploring the microbiome in health and disease: Implications for toxicology. Toxicology Research and Application 2017;1:239784731774188. [DOI: 10.1177/2397847317741884] [Cited by in Crossref: 10] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
3 Carrera-Quintanar L, Ortuño-Sahagún D, Franco-Arroyo NN, Viveros-Paredes JM, Zepeda-Morales AS, Lopez-Roa RI. The Human Microbiota and Obesity: A Literature Systematic Review of In Vivo Models and Technical Approaches. Int J Mol Sci 2018;19:E3827. [PMID: 30513674 DOI: 10.3390/ijms19123827] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
4 Schmedes M, Brejnrod AD, Aadland EK, Kiilerich P, Kristiansen K, Jacques H, Lavigne C, Graff IE, Eng Ø, Holthe A, Mellgren G, Young JF, Sundekilde UK, Liaset B, Bertram HC. The Effect of Lean-Seafood and Non-Seafood Diets on Fecal Metabolites and Gut Microbiome: Results from a Randomized Crossover Intervention Study. Mol Nutr Food Res 2019;63:e1700976. [PMID: 29509315 DOI: 10.1002/mnfr.201700976] [Cited by in Crossref: 20] [Cited by in F6Publishing: 20] [Article Influence: 5.0] [Reference Citation Analysis]
5 Feng Z, Long W, Hao B, Ding D, Ma X, Zhao L, Pang X. A human stool-derived Bilophila wadsworthia strain caused systemic inflammation in specific-pathogen-free mice. Gut Pathog 2017;9:59. [PMID: 29090023 DOI: 10.1186/s13099-017-0208-7] [Cited by in Crossref: 52] [Cited by in F6Publishing: 49] [Article Influence: 10.4] [Reference Citation Analysis]
6 Azad RK, Shulaev V. Metabolomics technology and bioinformatics for precision medicine. Brief Bioinform 2019;20:1957-71. [PMID: 29304189 DOI: 10.1093/bib/bbx170] [Cited by in Crossref: 20] [Cited by in F6Publishing: 17] [Article Influence: 10.0] [Reference Citation Analysis]
7 Fei N, Bruneau A, Zhang X, Wang R, Wang J, Rabot S, Gérard P, Zhao L. Endotoxin Producers Overgrowing in Human Gut Microbiota as the Causative Agents for Nonalcoholic Fatty Liver Disease. mBio 2020;11:e03263-19. [PMID: 32019793 DOI: 10.1128/mBio.03263-19] [Cited by in Crossref: 23] [Cited by in F6Publishing: 22] [Article Influence: 11.5] [Reference Citation Analysis]
8 Xia Y, Sun J. Hypothesis Testing and Statistical Analysis of Microbiome. Genes Dis 2017;4:138-48. [PMID: 30197908 DOI: 10.1016/j.gendis.2017.06.001] [Cited by in Crossref: 81] [Cited by in F6Publishing: 63] [Article Influence: 16.2] [Reference Citation Analysis]
9 Marsova M, Abilev S, Poluektova E, Danilenko V. A bioluminescent test system reveals valuable antioxidant properties of lactobacillus strains from human microbiota. World J Microbiol Biotechnol 2018;34:27. [PMID: 29344877 DOI: 10.1007/s11274-018-2410-2] [Cited by in Crossref: 9] [Cited by in F6Publishing: 9] [Article Influence: 2.3] [Reference Citation Analysis]
10 Zhang Z, Xu H, Zhao H, Geng Y, Ren Y, Guo L, Shi J, Xu Z. Edgeworthia gardneri (Wall.) Meisn. water extract improves diabetes and modulates gut microbiota. J Ethnopharmacol 2019;239:111854. [PMID: 30954614 DOI: 10.1016/j.jep.2019.111854] [Cited by in Crossref: 10] [Cited by in F6Publishing: 11] [Article Influence: 3.3] [Reference Citation Analysis]
11 Cha KH, Lee EH, Yoon HS, Lee JH, Kim JY, Kang K, Park JS, Jin JB, Ko G, Pan CH. Effects of fermented milk treatment on microbial population and metabolomic outcomes in a three-stage semi-continuous culture system. Food Chem 2018;263:216-24. [PMID: 29784310 DOI: 10.1016/j.foodchem.2018.04.095] [Cited by in Crossref: 14] [Cited by in F6Publishing: 9] [Article Influence: 3.5] [Reference Citation Analysis]
12 Zhu B, Cao H, Li G, Du W, Xu G, Domingo JS, Gu H, Xu N, Duan S, Lu J. Biodiversity and dynamics of cyanobacterial communities during blooms in temperate lake (Harsha Lake, Ohio, USA). Harmful Algae 2019;82:9-18. [PMID: 30928013 DOI: 10.1016/j.hal.2018.12.006] [Cited by in Crossref: 8] [Cited by in F6Publishing: 5] [Article Influence: 2.0] [Reference Citation Analysis]
13 Guo H, Li X, Zhang Y, Li J, Yang J, Jiang H, Sun G, Huo T. Metabolic characteristics related to the hazardous effects of environmental arsenic on humans: A metabolomic review. Ecotoxicology and Environmental Safety 2022;236:113459. [DOI: 10.1016/j.ecoenv.2022.113459] [Reference Citation Analysis]
14 Heintz-buschart A, Wilmes P. Human Gut Microbiome: Function Matters. Trends in Microbiology 2018;26:563-74. [DOI: 10.1016/j.tim.2017.11.002] [Cited by in Crossref: 185] [Cited by in F6Publishing: 155] [Article Influence: 46.3] [Reference Citation Analysis]
15 Arnold JW, Simpson JB, Roach J, Kwintkiewicz J, Azcarate-Peril MA. Intra-species Genomic and Physiological Variability Impact Stress Resistance in Strains of Probiotic Potential. Front Microbiol 2018;9:242. [PMID: 29515537 DOI: 10.3389/fmicb.2018.00242] [Cited by in Crossref: 11] [Cited by in F6Publishing: 8] [Article Influence: 2.8] [Reference Citation Analysis]
16 Lv BM, Quan Y, Zhang HY. Causal Inference in Microbiome Medicine: Principles and Applications. Trends Microbiol 2021;29:736-46. [PMID: 33895062 DOI: 10.1016/j.tim.2021.03.015] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
17 Chen G, Xie M, Dai Z, Wan P, Ye H, Zeng X, Sun Y. Kudingcha and Fuzhuan Brick Tea Prevent Obesity and Modulate Gut Microbiota in High-Fat Diet Fed Mice. Mol Nutr Food Res 2018;62:1700485. [DOI: 10.1002/mnfr.201700485] [Cited by in Crossref: 85] [Cited by in F6Publishing: 83] [Article Influence: 21.3] [Reference Citation Analysis]
18 Li X, Wang H, Wang T, Zheng F, Wang H, Wang C. Dietary wood pulp-derived sterols modulation of cholesterol metabolism and gut microbiota in high-fat-diet-fed hamsters. Food Funct 2019;10:775-85. [DOI: 10.1039/c8fo02271b] [Cited by in Crossref: 17] [Cited by in F6Publishing: 1] [Article Influence: 5.7] [Reference Citation Analysis]
19 Wang H, Zhang X, Wang S, Li H, Lu Z, Shi J, Xu Z. Mannan-oligosaccharide modulates the obesity and gut microbiota in high-fat diet-fed mice. Food Funct 2018;9:3916-29. [PMID: 29974116 DOI: 10.1039/c8fo00209f] [Cited by in Crossref: 41] [Cited by in F6Publishing: 19] [Article Influence: 10.3] [Reference Citation Analysis]
20 Wang J, Wang Y, Zhang X, Liu J, Zhang Q, Zhao Y, Peng J, Feng Q, Dai J, Sun S. Gut Microbial Dysbiosis Is Associated with Altered Hepatic Functions and Serum Metabolites in Chronic Hepatitis B Patients. Front Microbiol. 2017;8:2222. [PMID: 29180991 DOI: 10.3389/fmicb.2017.02222] [Cited by in Crossref: 67] [Cited by in F6Publishing: 70] [Article Influence: 13.4] [Reference Citation Analysis]
21 Bell V, Ferrão J, Pimentel L, Pintado M, Fernandes T. One Health, Fermented Foods, and Gut Microbiota. Foods 2018;7:E195. [PMID: 30513869 DOI: 10.3390/foods7120195] [Cited by in Crossref: 47] [Cited by in F6Publishing: 34] [Article Influence: 11.8] [Reference Citation Analysis]
22 Sudhakar P, Andrighetti T, Verstockt S, Caenepeel C, Ferrante M, Sabino J, Verstockt B, Vermeire S. Integrated analysis of microbe-host interactions in Crohn’s disease reveals potential mechanisms of microbial proteins on host gene expression. iScience 2022;25:103963. [DOI: 10.1016/j.isci.2022.103963] [Reference Citation Analysis]
23 Mao L, Zhang Y, Tian J, Sang M, Zhang G, Zhou Y, Wang P. Cross-Sectional Study on the Gut Microbiome of Parkinson's Disease Patients in Central China. Front Microbiol 2021;12:728479. [PMID: 34650532 DOI: 10.3389/fmicb.2021.728479] [Reference Citation Analysis]
24 Scanlan PD. Bacteria-Bacteriophage Coevolution in the Human Gut: Implications for Microbial Diversity and Functionality. Trends Microbiol 2017;25:614-23. [PMID: 28342597 DOI: 10.1016/j.tim.2017.02.012] [Cited by in Crossref: 52] [Cited by in F6Publishing: 43] [Article Influence: 10.4] [Reference Citation Analysis]
25 Zhang X, Chen W, Ning Z, Mayne J, Mack D, Stintzi A, Tian R, Figeys D. Deep Metaproteomics Approach for the Study of Human Microbiomes. Anal Chem 2017;89:9407-15. [PMID: 28749657 DOI: 10.1021/acs.analchem.7b02224] [Cited by in Crossref: 49] [Cited by in F6Publishing: 38] [Article Influence: 9.8] [Reference Citation Analysis]
26 Kaiser T, Jahansouz C, Staley C. Network-based approaches for the investigation of microbial community structure and function using metagenomics-based data. Future Microbiol 2022. [PMID: 35360922 DOI: 10.2217/fmb-2021-0219] [Reference Citation Analysis]
27 Bai S, Chen H, Zhu L, Liu W, Yu HD, Wang X, Yin Y. Comparative study on the in vitro effects of Pseudomonas aeruginosa and seaweed alginates on human gut microbiota. PLoS One. 2017;12:e0171576. [PMID: 28170428 DOI: 10.1371/journal.pone.0171576] [Cited by in Crossref: 19] [Cited by in F6Publishing: 17] [Article Influence: 3.8] [Reference Citation Analysis]
28 Chen Y, Xiao S, Gong Z, Zhu X, Yang Q, Li Y, Gao S, Dong Y, Shi Z, Wang Y, Weng X, Li Q, Cai W, Qiang W. Wuji Wan Formula Ameliorates Diarrhea and Disordered Colonic Motility in Post-inflammation Irritable Bowel Syndrome Rats by Modulating the Gut Microbiota. Front Microbiol 2017;8:2307. [PMID: 29218037 DOI: 10.3389/fmicb.2017.02307] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 2.0] [Reference Citation Analysis]
29 Nguyen QP, Karagas MR, Madan JC, Dade E, Palys TJ, Morrison HG, Pathmasiri WW, McRitche S, Sumner SJ, Frost HR, Hoen AG. Associations between the gut microbiome and metabolome in early life. BMC Microbiol 2021;21:238. [PMID: 34454437 DOI: 10.1186/s12866-021-02282-3] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
30 Zhang Y, Zhen M, Zhan Y, Song Y, Zhang Q, Wang J. Population-Genomic Insights into Variation in Prevotella intermedia and Prevotella nigrescens Isolates and Its Association with Periodontal Disease. Front Cell Infect Microbiol 2017;7:409. [PMID: 28983469 DOI: 10.3389/fcimb.2017.00409] [Cited by in Crossref: 18] [Cited by in F6Publishing: 15] [Article Influence: 3.6] [Reference Citation Analysis]
31 Gupta VK, Kim M, Bakshi U, Cunningham KY, Davis JM 3rd, Lazaridis KN, Nelson H, Chia N, Sung J. A predictive index for health status using species-level gut microbiome profiling. Nat Commun 2020;11:4635. [PMID: 32934239 DOI: 10.1038/s41467-020-18476-8] [Cited by in Crossref: 22] [Cited by in F6Publishing: 21] [Article Influence: 11.0] [Reference Citation Analysis]
32 Li D, Yang Y, Li Y, Li Z, Zhu X, Zeng X. Changes induced by chronic exposure to high arsenic concentrations in the intestine and its microenvironment. Toxicology 2021;456:152767. [PMID: 33813003 DOI: 10.1016/j.tox.2021.152767] [Reference Citation Analysis]
33 Yang Q, Lin SL, Kwok MK, Leung GM, Schooling CM. The Roles of 27 Genera of Human Gut Microbiota in Ischemic Heart Disease, Type 2 Diabetes Mellitus, and Their Risk Factors: A Mendelian Randomization Study. Am J Epidemiol 2018;187:1916-22. [PMID: 29800124 DOI: 10.1093/aje/kwy096] [Cited by in Crossref: 34] [Cited by in F6Publishing: 26] [Article Influence: 11.3] [Reference Citation Analysis]
34 Shankar J. Insights into study design and statistical analyses in translational microbiome studies. Ann Transl Med 2017;5:249. [PMID: 28706917 DOI: 10.21037/atm.2017.01.13] [Cited by in Crossref: 13] [Cited by in F6Publishing: 10] [Article Influence: 2.6] [Reference Citation Analysis]
35 Ghosh S, Yang X, Wang L, Zhang C, Zhao L. Active phase prebiotic feeding alters gut microbiota, induces weight-independent alleviation of hepatic steatosis and serum cholesterol in high-fat diet-fed mice. Comput Struct Biotechnol J 2021;19:448-58. [PMID: 33510856 DOI: 10.1016/j.csbj.2020.12.011] [Cited by in Crossref: 1] [Article Influence: 0.5] [Reference Citation Analysis]
36 Liu S, Zhao L, Wang L, Liu H. Microstructure-modified products from stone-milled wheat bran powder improve glycemic response and sustain colonic fermentation. Int J Biol Macromol 2020;153:1193-201. [PMID: 31756467 DOI: 10.1016/j.ijbiomac.2019.10.249] [Cited by in Crossref: 5] [Cited by in F6Publishing: 2] [Article Influence: 1.7] [Reference Citation Analysis]
37 De Filippis F, Pasolli E, Tett A, Tarallo S, Naccarati A, De Angelis M, Neviani E, Cocolin L, Gobbetti M, Segata N, Ercolini D. Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets. Cell Host & Microbe 2019;25:444-453.e3. [DOI: 10.1016/j.chom.2019.01.004] [Cited by in Crossref: 112] [Cited by in F6Publishing: 106] [Article Influence: 37.3] [Reference Citation Analysis]
38 Xia Y, Sun J, Chen D. Introductory Overview of Statistical Analysis of Microbiome Data. Statistical Analysis of Microbiome Data with R. Singapore: Springer; 2018. pp. 43-75. [DOI: 10.1007/978-981-13-1534-3_3] [Cited by in Crossref: 4] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
39 Zhang L, Xue X, Zhai R, Yang X, Li H, Zhao L, Zhang C. Timing of Calorie Restriction in Mice Impacts Host Metabolic Phenotype with Correlative Changes in Gut Microbiota. mSystems 2019;4:e00348-19. [PMID: 31796564 DOI: 10.1128/mSystems.00348-19] [Cited by in Crossref: 11] [Cited by in F6Publishing: 10] [Article Influence: 3.7] [Reference Citation Analysis]
40 Leulier F, MacNeil LT, Lee WJ, Rawls JF, Cani PD, Schwarzer M, Zhao L, Simpson SJ. Integrative Physiology: At the Crossroads of Nutrition, Microbiota, Animal Physiology, and Human Health. Cell Metab 2017;25:522-34. [PMID: 28273475 DOI: 10.1016/j.cmet.2017.02.001] [Cited by in Crossref: 68] [Cited by in F6Publishing: 59] [Article Influence: 13.6] [Reference Citation Analysis]
41 Klimina KM, Kasianov AS, Poluektova EU, Emelyanov KV, Voroshilova VN, Zakharevich NV, Kudryavtseva AV, Makeev VJ, Danilenko VN. Employing toxin-antitoxin genome markers for identification of Bifidobacterium and Lactobacillus strains in human metagenomes. PeerJ 2019;7:e6554. [PMID: 30863681 DOI: 10.7717/peerj.6554] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
42 Wu G, Zhang C, Wu H, Wang R, Shen J, Wang L, Zhao Y, Pang X, Zhang X, Zhao L, Zhang M. Genomic Microdiversity of Bifidobacterium pseudocatenulatum Underlying Differential Strain-Level Responses to Dietary Carbohydrate Intervention. mBio 2017;8:e02348-16. [PMID: 28196965 DOI: 10.1128/mBio.02348-16] [Cited by in Crossref: 25] [Cited by in F6Publishing: 21] [Article Influence: 5.0] [Reference Citation Analysis]
43 Chen Y, Fang H, Li C, Wu G, Xu T, Yang X, Zhao L, Ke X, Zhang C. Gut Bacteria Shared by Children and Their Mothers Associate with Developmental Level and Social Deficits in Autism Spectrum Disorder. mSphere 2020;5:e01044-20. [PMID: 33268567 DOI: 10.1128/mSphere.01044-20] [Cited by in Crossref: 1] [Article Influence: 0.5] [Reference Citation Analysis]
44 Arnold JW, Simpson JB, Roach J, Bruno-Barcena JM, Azcarate-Peril MA. Prebiotics for Lactose Intolerance: Variability in Galacto-Oligosaccharide Utilization by Intestinal Lactobacillus rhamnosus. Nutrients 2018;10:E1517. [PMID: 30332787 DOI: 10.3390/nu10101517] [Cited by in Crossref: 20] [Cited by in F6Publishing: 12] [Article Influence: 5.0] [Reference Citation Analysis]
45 Wu G, Zhao N, Zhang C, Lam YY, Zhao L. Guild-based analysis for understanding gut microbiome in human health and diseases. Genome Med. 2021;13:22. [PMID: 33563315 DOI: 10.1186/s13073-021-00840-y] [Cited by in Crossref: 9] [Cited by in F6Publishing: 8] [Article Influence: 9.0] [Reference Citation Analysis]
46 Wu L, Zeng T, Zinellu A, Rubino S, Kelvin DJ, Carru C. A Cross-Sectional Study of Compositional and Functional Profiles of Gut Microbiota in Sardinian Centenarians. mSystems 2019;4:e00325-19. [PMID: 31289141 DOI: 10.1128/mSystems.00325-19] [Cited by in Crossref: 27] [Cited by in F6Publishing: 19] [Article Influence: 9.0] [Reference Citation Analysis]
47 Xu C, Jia Q, Zhang L, Wang Z, Zhu S, Wang X, Liu Y, Li M, Zhang J, Wang X, Zhang J, Sun Q, Wang K, Zhu H, Duan L. Multiomics Study of Gut Bacteria and Host Metabolism in Irritable Bowel Syndrome and Depression Patients. Front Cell Infect Microbiol 2020;10:580980. [PMID: 33194817 DOI: 10.3389/fcimb.2020.580980] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 0.5] [Reference Citation Analysis]
48 Callens M, Watanabe H, Kato Y, Miura J, Decaestecker E. Microbiota inoculum composition affects holobiont assembly and host growth in Daphnia. Microbiome 2018;6:56. [PMID: 29566771 DOI: 10.1186/s40168-018-0444-1] [Cited by in Crossref: 38] [Cited by in F6Publishing: 28] [Article Influence: 9.5] [Reference Citation Analysis]
49 Shevchenko SG, Radey M, Tchesnokova V, Kisiela D, Sokurenko EV. Escherichia coli Clonobiome: Assessing the Strain Diversity in Feces and Urine by Deep Amplicon Sequencing. Appl Environ Microbiol 2019;85:e01866-19. [PMID: 31540992 DOI: 10.1128/AEM.01866-19] [Cited by in Crossref: 5] [Cited by in F6Publishing: 2] [Article Influence: 1.7] [Reference Citation Analysis]
50 Lamichhane S, Yde CC, Jensen HM, Morovic W, Hibberd AA, Ouwehand AC, Saarinen MT, Forssten SD, Wiebe L, Marcussen J, Bertelsen K, Meier S, Young JF, Bertram HC. Metabolic Fate of 13 C-Labeled Polydextrose and Impact on the Gut Microbiome: A Triple-Phase Study in a Colon Simulator. J Proteome Res 2018;17:1041-53. [DOI: 10.1021/acs.jproteome.7b00683] [Cited by in Crossref: 9] [Cited by in F6Publishing: 6] [Article Influence: 2.3] [Reference Citation Analysis]
51 Khalsa J, Duffy LC, Riscuta G, Starke-reed P, Hubbard VS. Omics for Understanding the Gut-Liver-Microbiome Axis and Precision Medicine. Clinical Pharmacology in Drug Development 2017;6:176-85. [DOI: 10.1002/cpdd.310] [Cited by in Crossref: 12] [Cited by in F6Publishing: 9] [Article Influence: 2.4] [Reference Citation Analysis]
52 Klimina KM, Voroshilova VN, Poluektova EU, Veselovsky VA, Yunes RA, Kovtun AS, Kudryavtseva AV, Kasianov AS, Danilenko VN. Toxin-Antitoxin Systems: A Tool for Taxonomic Analysis of Human Intestinal Microbiota. Toxins (Basel) 2020;12:E388. [PMID: 32545455 DOI: 10.3390/toxins12060388] [Cited by in Crossref: 3] [Article Influence: 1.5] [Reference Citation Analysis]