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For: Cirillo D, Marchese D, Agostini F, Livi CM, Botta-Orfila T, Tartaglia GG. Constitutive patterns of gene expression regulated by RNA-binding proteins. Genome Biol 2014;15:R13. [PMID: 24401680 DOI: 10.1186/gb-2014-15-1-r13] [Cited by in Crossref: 32] [Cited by in F6Publishing: 30] [Article Influence: 4.0] [Reference Citation Analysis]
Number Citing Articles
1 Colantoni A, Rupert J, Vandelli A, Tartaglia GG, Zacco E. Zooming in on protein-RNA interactions: a multi-level workflow to identify interaction partners. Biochem Soc Trans 2020;48:1529-43. [PMID: 32820806 DOI: 10.1042/BST20191059] [Cited by in Crossref: 2] [Article Influence: 2.0] [Reference Citation Analysis]
2 Armaos A, Zacco E, Sanchez de Groot N, Tartaglia GG. RNA-protein interactions: Central players in coordination of regulatory networks. Bioessays 2021;43:e2000118. [PMID: 33284474 DOI: 10.1002/bies.202000118] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
3 Klus P, Bolognesi B, Agostini F, Marchese D, Zanzoni A, Tartaglia GG. The cleverSuite approach for protein characterization: predictions of structural properties, solubility, chaperone requirements and RNA-binding abilities. Bioinformatics 2014;30:1601-8. [PMID: 24493033 DOI: 10.1093/bioinformatics/btu074] [Cited by in Crossref: 30] [Cited by in F6Publishing: 28] [Article Influence: 3.8] [Reference Citation Analysis]
4 Gerstberger S, Hafner M, Tuschl T. A census of human RNA-binding proteins. Nat Rev Genet 2014;15:829-45. [PMID: 25365966 DOI: 10.1038/nrg3813] [Cited by in Crossref: 932] [Cited by in F6Publishing: 807] [Article Influence: 116.5] [Reference Citation Analysis]
5 Cirillo D, Botta-Orfila T, Tartaglia GG. By the company they keep: interaction networks define the binding ability of transcription factors. Nucleic Acids Res 2015;43:e125. [PMID: 26089389 DOI: 10.1093/nar/gkv607] [Cited by in Crossref: 10] [Cited by in F6Publishing: 7] [Article Influence: 1.4] [Reference Citation Analysis]
6 Attar N. The RBPome: where the brains meet the brawn. Genome Biol 2014;15:402. [PMID: 24485298 DOI: 10.1186/gb4153] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 0.3] [Reference Citation Analysis]
7 Yang M, Zhang J, Jin X, Li C, Zhou G, Feng J. NRF1-enhanced miR-4458 alleviates cardiac hypertrophy through releasing TTP-inhibited TFAM. In Vitro Cell Dev Biol Anim 2020;56:120-8. [PMID: 31942725 DOI: 10.1007/s11626-019-00419-3] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
8 Gotor NL, Armaos A, Calloni G, Torrent Burgas M, Vabulas RM, De Groot NS, Tartaglia GG. RNA-binding and prion domains: the Yin and Yang of phase separation. Nucleic Acids Res 2020;48:9491-504. [PMID: 32857852 DOI: 10.1093/nar/gkaa681] [Cited by in Crossref: 17] [Cited by in F6Publishing: 12] [Article Influence: 8.5] [Reference Citation Analysis]
9 Zhou B, Guo R. Genomic and regulatory characteristics of significant transcription factors in colorectal cancer metastasis. Sci Rep 2018;8:17836. [PMID: 30546056 DOI: 10.1038/s41598-018-36168-8] [Cited by in Crossref: 12] [Cited by in F6Publishing: 11] [Article Influence: 3.0] [Reference Citation Analysis]
10 Klus P, Cirillo D, Botta Orfila T, Gaetano Tartaglia G. Neurodegeneration and Cancer: Where the Disorder Prevails. Sci Rep 2015;5:15390. [PMID: 26493371 DOI: 10.1038/srep15390] [Cited by in Crossref: 24] [Cited by in F6Publishing: 23] [Article Influence: 3.4] [Reference Citation Analysis]
11 Mann CM, Muppirala UK, Dobbs D. Computational Prediction of RNA-Protein Interactions. Methods Mol Biol 2017;1543:169-85. [PMID: 28349426 DOI: 10.1007/978-1-4939-6716-2_8] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 1.5] [Reference Citation Analysis]
12 Armaos A, Colantoni A, Proietti G, Rupert J, Tartaglia GG. catRAPID omics v2.0: going deeper and wider in the prediction of protein-RNA interactions. Nucleic Acids Res 2021;49:W72-9. [PMID: 34086933 DOI: 10.1093/nar/gkab393] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
13 Lobanov MY, Klus P, Sokolovsky IV, Tartaglia GG, Galzitskaya OV. Non-random distribution of homo-repeats: links with biological functions and human diseases. Sci Rep 2016;6:26941. [PMID: 27256590 DOI: 10.1038/srep26941] [Cited by in Crossref: 20] [Cited by in F6Publishing: 14] [Article Influence: 3.3] [Reference Citation Analysis]
14 Nishtala S, Neelamraju Y, Janga SC. Dissecting the expression relationships between RNA-binding proteins and their cognate targets in eukaryotic post-transcriptional regulatory networks. Sci Rep 2016;6:25711. [PMID: 27161996 DOI: 10.1038/srep25711] [Cited by in Crossref: 9] [Cited by in F6Publishing: 8] [Article Influence: 1.5] [Reference Citation Analysis]
15 Zanzoni A, Spinelli L, Ribeiro DM, Tartaglia GG, Brun C. Post-transcriptional regulatory patterns revealed by protein-RNA interactions. Sci Rep 2019;9:4302. [PMID: 30867517 DOI: 10.1038/s41598-019-40939-2] [Cited by in Crossref: 16] [Cited by in F6Publishing: 11] [Article Influence: 5.3] [Reference Citation Analysis]
16 Dasti A, Cid-samper F, Bechara E, Tartaglia GG. RNA-centric approaches to study RNA-protein interactions in vitro and in silico. Methods 2020;178:11-8. [DOI: 10.1016/j.ymeth.2019.09.011] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 3.5] [Reference Citation Analysis]
17 Cornella N, Tebaldi T, Gasperini L, Singh J, Padgett RA, Rossi A, Macchi P. The hnRNP RALY regulates transcription and cell proliferation by modulating the expression of specific factors including the proliferation marker E2F1. J Biol Chem 2017;292:19674-92. [PMID: 28972179 DOI: 10.1074/jbc.M117.795591] [Cited by in Crossref: 13] [Cited by in F6Publishing: 8] [Article Influence: 2.6] [Reference Citation Analysis]
18 Klus P, Ponti RD, Livi CM, Tartaglia GG. Protein aggregation, structural disorder and RNA-binding ability: a new approach for physico-chemical and gene ontology classification of multiple datasets. BMC Genomics 2015;16:1071. [PMID: 26673865 DOI: 10.1186/s12864-015-2280-z] [Cited by in Crossref: 14] [Cited by in F6Publishing: 11] [Article Influence: 2.0] [Reference Citation Analysis]
19 Botta-orfila T, Tartaglia GG, Michalon A. Molecular Pathophysiology of Fragile X-Associated Tremor/Ataxia Syndrome and Perspectives for Drug Development. Cerebellum 2016;15:599-610. [DOI: 10.1007/s12311-016-0800-2] [Cited by in Crossref: 13] [Cited by in F6Publishing: 11] [Article Influence: 2.2] [Reference Citation Analysis]
20 Schikora-Tamarit MÀ, Toscano-Ochoa C, Domingo Espinós J, Espinar L, Carey LB. A synthetic gene circuit for measuring autoregulatory feedback control. Integr Biol (Camb) 2016;8:546-55. [PMID: 26728081 DOI: 10.1039/c5ib00230c] [Cited by in Crossref: 10] [Cited by in F6Publishing: 3] [Article Influence: 1.7] [Reference Citation Analysis]
21 Marchese D, Botta-Orfila T, Cirillo D, Rodriguez JA, Livi CM, Fernández-Santiago R, Ezquerra M, Martí MJ, Bechara E, Tartaglia GG; Catalan MSA Registry (CMSAR). Discovering the 3' UTR-mediated regulation of alpha-synuclein. Nucleic Acids Res 2017;45:12888-903. [PMID: 29149290 DOI: 10.1093/nar/gkx1048] [Cited by in Crossref: 21] [Cited by in F6Publishing: 18] [Article Influence: 5.3] [Reference Citation Analysis]
22 Jackson TC, Kotermanski SE, Kochanek PM. Whole-transcriptome microarray analysis reveals regulation of Rab4 by RBM5 in neurons. Neuroscience 2017;361:93-107. [PMID: 28818525 DOI: 10.1016/j.neuroscience.2017.08.014] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 1.2] [Reference Citation Analysis]
23 Cirillo D, Livi CM, Agostini F, Tartaglia GG. Discovery of protein–RNA networks. Mol BioSyst 2014;10:1632-42. [DOI: 10.1039/c4mb00099d] [Cited by in Crossref: 13] [Cited by in F6Publishing: 10] [Article Influence: 1.6] [Reference Citation Analysis]
24 Parks MM. An exact test for comparing a fixed quantitative property between gene sets. Bioinformatics 2018;34:971-7. [PMID: 29088314 DOI: 10.1093/bioinformatics/btx693] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 0.8] [Reference Citation Analysis]
25 Marchese D, Livi CM, Tartaglia GG. A Computational Approach for the Discovery of Protein-RNA Networks. Methods Mol Biol 2016;1358:29-39. [PMID: 26463375 DOI: 10.1007/978-1-4939-3067-8_2] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.5] [Reference Citation Analysis]
26 Marchese D, de Groot NS, Lorenzo Gotor N, Livi CM, Tartaglia GG. Advances in the characterization of RNA-binding proteins. Wiley Interdiscip Rev RNA 2016;7:793-810. [PMID: 27503141 DOI: 10.1002/wrna.1378] [Cited by in Crossref: 62] [Cited by in F6Publishing: 54] [Article Influence: 10.3] [Reference Citation Analysis]
27 Balcerak A, Trebinska-Stryjewska A, Konopinski R, Wakula M, Grzybowska EA. RNA-protein interactions: disorder, moonlighting and junk contribute to eukaryotic complexity. Open Biol 2019;9:190096. [PMID: 31213136 DOI: 10.1098/rsob.190096] [Cited by in Crossref: 34] [Cited by in F6Publishing: 24] [Article Influence: 11.3] [Reference Citation Analysis]
28 Tartaglia GG. The Grand Challenge of Characterizing Ribonucleoprotein Networks. Front Mol Biosci 2016;3:24. [PMID: 27376072 DOI: 10.3389/fmolb.2016.00024] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 1.7] [Reference Citation Analysis]
29 Zheng R, Zhang K, Tan S, Gao F, Zhang Y, Xu W, Wang H, Gu D, Zhu L, Li S, Chu H, Zhang Z, Liu L, Du M, Wang M. Exosomal circLPAR1 functions in colorectal cancer diagnosis and tumorigenesis through suppressing BRD4 via METTL3–eIF3h interaction. Mol Cancer 2022;21. [DOI: 10.1186/s12943-021-01471-y] [Cited by in Crossref: 7] [Cited by in F6Publishing: 5] [Article Influence: 7.0] [Reference Citation Analysis]
30 Sanchez de Groot N, Armaos A, Graña-Montes R, Alriquet M, Calloni G, Vabulas RM, Tartaglia GG. RNA structure drives interaction with proteins. Nat Commun 2019;10:3246. [PMID: 31324771 DOI: 10.1038/s41467-019-10923-5] [Cited by in Crossref: 44] [Cited by in F6Publishing: 35] [Article Influence: 14.7] [Reference Citation Analysis]
31 Zagrovic B. Of RNA-binding proteins and their targets: interaction determines expression. Genome Biol 2014;15:102. [PMID: 24468021 DOI: 10.1186/gb4155] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.4] [Reference Citation Analysis]