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For: Mariadassou M, Pichon S, Ebert D, Grover JP. Microbial ecosystems are dominated by specialist taxa. Ecol Lett 2015;18:974-82. [DOI: 10.1111/ele.12478] [Cited by in Crossref: 49] [Cited by in F6Publishing: 39] [Article Influence: 7.0] [Reference Citation Analysis]
Number Citing Articles
1 Alahmad A, Decocq G, Spicher F, Kheirbeik L, Kobaissi A, Tetu T, Dubois F, Duclercq J, Mori A. Cover crops in arable lands increase functional complementarity and redundancy of bacterial communities. J Appl Ecol 2018;56:651-64. [DOI: 10.1111/1365-2664.13307] [Cited by in Crossref: 3] [Article Influence: 0.8] [Reference Citation Analysis]
2 Eckert EM, Amalfitano S, Di Cesare A, Manzari C, Corno G, Fontaneto D. Different substrates within a lake harbour connected but specialised microbial communities. Hydrobiologia 2020;847:1689-704. [DOI: 10.1007/s10750-019-04068-1] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 1.7] [Reference Citation Analysis]
3 Wang S, Zuo X, Zhao X, Awada T, Luo Y, Li Y, Qu H. Dominant plant species shape soil bacterial community in semiarid sandy land of northern China. Ecol Evol 2018;8:1693-704. [PMID: 29435244 DOI: 10.1002/ece3.3746] [Cited by in Crossref: 12] [Cited by in F6Publishing: 5] [Article Influence: 3.0] [Reference Citation Analysis]
4 Algora C, Odriozola I, Human ZR, Hollá SA, Baldrian P, López-mondéjar R. Specific utilization of biopolymers of plant and fungal origin reveals the existence of substrate-specific guilds for bacteria in temperate forest soils. Soil Biology and Biochemistry 2022. [DOI: 10.1016/j.soilbio.2022.108696] [Reference Citation Analysis]
5 Mo Y, Zhang W, Wilkinson DM, Yu Z, Xiao P, Yang J. Biogeography and co‐occurrence patterns of bacterial generalists and specialists in three subtropical marine bays. Limnol Oceanogr 2021;66:793-806. [DOI: 10.1002/lno.11643] [Cited by in Crossref: 8] [Cited by in F6Publishing: 4] [Article Influence: 4.0] [Reference Citation Analysis]
6 Chen Y, Leung PM, Wood JL, Bay SK, Hugenholtz P, Kessler AJ, Shelley G, Waite DW, Franks AE, Cook PLM, Greening C. Metabolic flexibility allows bacterial habitat generalists to become dominant in a frequently disturbed ecosystem. ISME J. [DOI: 10.1038/s41396-021-00988-w] [Cited by in Crossref: 1] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
7 Malard LA, Mod HK, Guex N, Broennimann O, Yashiro E, Lara E, Mitchell EA, Niculita-hirzel H, Guisan A. Comparative analysis of diversity and environmental niches of soil bacterial, archaeal, fungal and protist communities reveal niche divergences along environmental gradients in the Alps. Soil Biology and Biochemistry 2022. [DOI: 10.1016/j.soilbio.2022.108674] [Reference Citation Analysis]
8 Kivlin SN, Bedoya R, Hawkes CV. Heterogeneity in arbuscular mycorrhizal fungal communities may contribute to inconsistent plant-soil feedback in a Neotropical forest. Plant Soil 2018;432:29-44. [DOI: 10.1007/s11104-018-3777-4] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 1.5] [Reference Citation Analysis]
9 Xu Q, Ling N, Chen H, Duan Y, Wang S, Shen Q, Vandenkoornhuyse P. Long-Term Chemical-Only Fertilization Induces a Diversity Decline and Deep Selection on the Soil Bacteria. mSystems 2020;5:e00337-20. [PMID: 32665327 DOI: 10.1128/mSystems.00337-20] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 1.5] [Reference Citation Analysis]
10 Phoma BS, Makhalanyane TP. Depth-Dependent Variables Shape Community Structure and Functionality in the Prince Edward Islands. Microb Ecol 2021;81:396-409. [PMID: 32935183 DOI: 10.1007/s00248-020-01589-4] [Reference Citation Analysis]
11 Abrego N, Huotari T, Tack AJM, Lindahl BD, Tikhonov G, Somervuo P, Martin Schmidt N, Ovaskainen O, Roslin T. Higher host plant specialization of root-associated endophytes than mycorrhizal fungi along an arctic elevational gradient. Ecol Evol 2020;10:8989-9002. [PMID: 32884673 DOI: 10.1002/ece3.6604] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
12 Fodelianakis S, Lorz A, Valenzuela-Cuevas A, Barozzi A, Booth JM, Daffonchio D. Dispersal homogenizes communities via immigration even at low rates in a simplified synthetic bacterial metacommunity. Nat Commun 2019;10:1314. [PMID: 30899017 DOI: 10.1038/s41467-019-09306-7] [Cited by in Crossref: 20] [Cited by in F6Publishing: 14] [Article Influence: 6.7] [Reference Citation Analysis]
13 Ge Y, Ahmed S, Yao W, You L, Zheng J, Hileuskaya K. Regulation effects of indigestible dietary polysaccharides on intestinal microflora: An overview. J Food Biochem 2021;45:e13564. [PMID: 33219555 DOI: 10.1111/jfbc.13564] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
14 Yu Q, Zhou R, Wang Y, Feng T, Li H. Corpse decomposition increases nitrogen pollution and alters the succession of nirK-type denitrifying communities in different water types. Science of The Total Environment 2020;747:141472. [DOI: 10.1016/j.scitotenv.2020.141472] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
15 Gajigan AP, Yñiguez AT, Villanoy CL, San Diego-McGlone ML, Jacinto GS, Conaco C. Diversity and community structure of marine microbes around the Benham Rise underwater plateau, northeastern Philippines. PeerJ 2018;6:e4781. [PMID: 29785352 DOI: 10.7717/peerj.4781] [Cited by in Crossref: 9] [Cited by in F6Publishing: 5] [Article Influence: 2.3] [Reference Citation Analysis]
16 Kuang J, Bates CT, Wan X, Ning D, Deng D, Shu W, Zhou J. High historical variability weakens the effects of current climate differentiation on microbial community dissimilarity and assembly. Glob Chang Biol 2021. [PMID: 34403163 DOI: 10.1111/gcb.15848] [Reference Citation Analysis]
17 Walke JB, Becker MH, Hughey MC, Swartwout MC, Jensen RV, Belden LK. Dominance‐function relationships in the amphibian skin microbiome. Environmental Microbiology 2017;19:3387-97. [DOI: 10.1111/1462-2920.13850] [Cited by in Crossref: 11] [Cited by in F6Publishing: 9] [Article Influence: 2.2] [Reference Citation Analysis]
18 Ruiz-Perez D, Guan H, Madhivanan P, Mathee K, Narasimhan G. So you think you can PLS-DA? BMC Bioinformatics 2020;21:2. [PMID: 33297937 DOI: 10.1186/s12859-019-3310-7] [Cited by in Crossref: 12] [Cited by in F6Publishing: 10] [Article Influence: 6.0] [Reference Citation Analysis]
19 Oono R. A confidence interval analysis of sampling effort, sequencing depth, and taxonomic resolution of fungal community ecology in the era of high-throughput sequencing. PLoS One 2017;12:e0189796. [PMID: 29253889 DOI: 10.1371/journal.pone.0189796] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.6] [Reference Citation Analysis]
20 López-Mondéjar R, Brabcová V, Štursová M, Davidová A, Jansa J, Cajthaml T, Baldrian P. Decomposer food web in a deciduous forest shows high share of generalist microorganisms and importance of microbial biomass recycling. ISME J 2018;12:1768-78. [PMID: 29491492 DOI: 10.1038/s41396-018-0084-2] [Cited by in Crossref: 52] [Cited by in F6Publishing: 27] [Article Influence: 13.0] [Reference Citation Analysis]
21 Waring B, Hawkes CV. Ecological mechanisms underlying soil bacterial responses to rainfall along a steep natural precipitation gradient. FEMS Microbiol Ecol 2018;94. [PMID: 29325015 DOI: 10.1093/femsec/fiy001] [Cited by in Crossref: 11] [Cited by in F6Publishing: 4] [Article Influence: 3.7] [Reference Citation Analysis]
22 Liu C, Li X, Mansoldo FR, An J, Kou Y, Zhang X, Wang J, Zeng J, Vermelho AB, Yao M. Microbial habitat specificity largely affects microbial co-occurrence patterns and functional profiles in wetland soils. Geoderma 2022;418:115866. [DOI: 10.1016/j.geoderma.2022.115866] [Reference Citation Analysis]
23 Mueller RC, Rodrigues JLM, Nüsslein K, Bohannan BJM, Treseder K. Land use change in the Amazon rain forest favours generalist fungi. Funct Ecol 2016;30:1845-53. [DOI: 10.1111/1365-2435.12651] [Cited by in Crossref: 35] [Cited by in F6Publishing: 12] [Article Influence: 5.8] [Reference Citation Analysis]
24 Cobian GM, Egan CP, Amend AS. Plant-microbe specificity varies as a function of elevation. ISME J 2019;13:2778-88. [PMID: 31300724 DOI: 10.1038/s41396-019-0470-4] [Cited by in Crossref: 16] [Cited by in F6Publishing: 13] [Article Influence: 5.3] [Reference Citation Analysis]
25 Kim J, Salvador M, Saunders E, González J, Avignone-Rossa C, Jiménez JI. Properties of alternative microbial hosts used in synthetic biology: towards the design of a modular chassis. Essays Biochem 2016;60:303-13. [PMID: 27903818 DOI: 10.1042/EBC20160015] [Cited by in Crossref: 32] [Cited by in F6Publishing: 7] [Article Influence: 6.4] [Reference Citation Analysis]
26 [DOI: 10.1101/2020.02.12.945220] [Cited by in Crossref: 13] [Cited by in F6Publishing: 2] [Reference Citation Analysis]
27 Baquero F, Coque TM, Martínez JL, Aracil-Gisbert S, Lanza VF. Gene Transmission in the One Health Microbiosphere and the Channels of Antimicrobial Resistance. Front Microbiol 2019;10:2892. [PMID: 31921068 DOI: 10.3389/fmicb.2019.02892] [Cited by in Crossref: 22] [Cited by in F6Publishing: 22] [Article Influence: 7.3] [Reference Citation Analysis]
28 Bell TH, Bell T. Many roads to bacterial generalism. FEMS Microbiol Ecol 2020;97:fiaa240. [PMID: 33238305 DOI: 10.1093/femsec/fiaa240] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 3.0] [Reference Citation Analysis]
29 Armstrong A, Valverde A, Ramond JB, Makhalanyane TP, Jansson JK, Hopkins DW, Aspray TJ, Seely M, Trindade MI, Cowan DA. Temporal dynamics of hot desert microbial communities reveal structural and functional responses to water input. Sci Rep 2016;6:34434. [PMID: 27680878 DOI: 10.1038/srep34434] [Cited by in Crossref: 38] [Cited by in F6Publishing: 28] [Article Influence: 6.3] [Reference Citation Analysis]
30 Li X, Guo R, Wu X, Liu X, Ai L, Sheng Y, Song Z, Wu Y. Dynamic digestion of tamarind seed polysaccharide: Indigestibility in gastrointestinal simulations and gut microbiota changes in vitro. Carbohydrate Polymers 2020;239:116194. [DOI: 10.1016/j.carbpol.2020.116194] [Cited by in Crossref: 16] [Cited by in F6Publishing: 13] [Article Influence: 8.0] [Reference Citation Analysis]
31 Aijuka M, Buys EM. Persistence of foodborne diarrheagenic Escherichia coli in the agricultural and food production environment: Implications for food safety and public health. Food Microbiology 2019;82:363-70. [DOI: 10.1016/j.fm.2019.03.018] [Cited by in Crossref: 13] [Cited by in F6Publishing: 10] [Article Influence: 4.3] [Reference Citation Analysis]
32 Linz AM, Crary BC, Shade A, Owens S, Gilbert JA, Knight R, McMahon KD. Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes. mSphere 2017;2:e00169-17. [PMID: 28680968 DOI: 10.1128/mSphere.00169-17] [Cited by in Crossref: 27] [Cited by in F6Publishing: 22] [Article Influence: 5.4] [Reference Citation Analysis]
33 Tangedal S, Aanerud M, Grønseth R, Drengenes C, Wiker HG, Bakke PS, Eagan TM. Comparing microbiota profiles in induced and spontaneous sputum samples in COPD patients. Respir Res 2017;18:164. [PMID: 28851370 DOI: 10.1186/s12931-017-0645-3] [Cited by in Crossref: 14] [Cited by in F6Publishing: 16] [Article Influence: 2.8] [Reference Citation Analysis]
34 Cooper RO, Cressler CE. Characterization of key bacterial species in the Daphnia magna microbiota using shotgun metagenomics. Sci Rep 2020;10:652. [PMID: 31959775 DOI: 10.1038/s41598-019-57367-x] [Cited by in Crossref: 8] [Cited by in F6Publishing: 7] [Article Influence: 4.0] [Reference Citation Analysis]
35 Cockburn DW, Koropatkin NM. Polysaccharide Degradation by the Intestinal Microbiota and Its Influence on Human Health and Disease. J Mol Biol 2016;428:3230-52. [PMID: 27393306 DOI: 10.1016/j.jmb.2016.06.021] [Cited by in F6Publishing: 187] [Reference Citation Analysis]
36 Fodelianakis S, Moustakas A, Papageorgiou N, Manoli O, Tsikopoulou I, Michoud G, Daffonchio D, Karakassis I, Ladoukakis ED. Modified niche optima and breadths explain the historical contingency of bacterial community responses to eutrophication in coastal sediments. Mol Ecol 2017;26:2006-18. [DOI: 10.1111/mec.13842] [Cited by in Crossref: 14] [Cited by in F6Publishing: 8] [Article Influence: 2.3] [Reference Citation Analysis]
37 Li H, Li T, Yao M, Li J, Zhang S, Wirth S, Cao W, Lin Q, Li X. Pika Gut May Select for Rare but Diverse Environmental Bacteria. Front Microbiol 2016;7:1269. [PMID: 27582734 DOI: 10.3389/fmicb.2016.01269] [Cited by in Crossref: 27] [Cited by in F6Publishing: 31] [Article Influence: 4.5] [Reference Citation Analysis]
38 Muscarella ME, Boot CM, Broeckling CD, Lennon JT. Resource heterogeneity structures aquatic bacterial communities. ISME J 2019;13:2183-95. [PMID: 31053829 DOI: 10.1038/s41396-019-0427-7] [Cited by in Crossref: 34] [Cited by in F6Publishing: 22] [Article Influence: 11.3] [Reference Citation Analysis]
39 Eldridge DJ, Delgado-baquerizo M, Travers SK, Val J, Oliver I, Hamonts K, Singh BK. Competition drives the response of soil microbial diversity to increased grazing by vertebrate herbivores. Ecology 2017;98:1922-31. [DOI: 10.1002/ecy.1879] [Cited by in Crossref: 42] [Cited by in F6Publishing: 21] [Article Influence: 8.4] [Reference Citation Analysis]
40 Zhao F, Ju F, Huang K, Mao Y, Zhang X, Ren H, Zhang T. Comprehensive insights into the key components of bacterial assemblages in pharmaceutical wastewater treatment plants. Science of The Total Environment 2019;651:2148-57. [DOI: 10.1016/j.scitotenv.2018.10.101] [Cited by in Crossref: 13] [Cited by in F6Publishing: 8] [Article Influence: 4.3] [Reference Citation Analysis]
41 Lampert N, Mikaelyan A, Brune A. Diet is not the primary driver of bacterial community structure in the gut of litter-feeding cockroaches. BMC Microbiol 2019;19:238. [PMID: 31666028 DOI: 10.1186/s12866-019-1601-9] [Cited by in Crossref: 9] [Cited by in F6Publishing: 7] [Article Influence: 3.0] [Reference Citation Analysis]
42 Lee SH, Kim TS, Park HD. Transient-rare Bacterial Taxa Are Assembled Neutrally across Temporal Scales. Microbes Environ 2021;36. [PMID: 33563869 DOI: 10.1264/jsme2.ME20110] [Reference Citation Analysis]
43 Ma ZS, Li L. Quantifying the human vaginal community state types (CSTs) with the species specificity index. PeerJ 2017;5:e3366. [PMID: 28674641 DOI: 10.7717/peerj.3366] [Cited by in Crossref: 11] [Cited by in F6Publishing: 9] [Article Influence: 2.2] [Reference Citation Analysis]
44 Shen D, Jürgens K, Beier S. Experimental insights into the importance of ecologically dissimilar bacteria to community assembly along a salinity gradient: Community assembly of ecologically dissimilar taxa. Environ Microbiol 2018;20:1170-84. [DOI: 10.1111/1462-2920.14059] [Cited by in Crossref: 17] [Cited by in F6Publishing: 16] [Article Influence: 4.3] [Reference Citation Analysis]