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For: Wu S, Sun C, Li Y, Wang T, Jia L, Lai S, Yang Y, Luo P, Dai D, Yang YQ, Luo Q, Gao NL, Ning K, He LJ, Zhao XM, Chen WH. GMrepo: a database of curated and consistently annotated human gut metagenomes. Nucleic Acids Res 2020;48:D545-53. [PMID: 31504765 DOI: 10.1093/nar/gkz764] [Cited by in Crossref: 22] [Cited by in F6Publishing: 20] [Article Influence: 11.0] [Reference Citation Analysis]
Number Citing Articles
1 Su X, Jing G, Zhang Y, Wu S. Method development for cross-study microbiome data mining: Challenges and opportunities. Comput Struct Biotechnol J 2020;18:2075-80. [PMID: 32802279 DOI: 10.1016/j.csbj.2020.07.020] [Cited by in Crossref: 9] [Cited by in F6Publishing: 7] [Article Influence: 4.5] [Reference Citation Analysis]
2 Xu Y, Lei B, Zhang Q, Lei Y, Li C, Li X, Yao R, Hu R, Liu K, Wang Y, Cui Y, Wang L, Dai J, Li L, Ni W, Zhou P, Liu Z, Hu S. ADDAGMA: A Database for Domestic Animal Gut Microbiome Atlas. Computational and Structural Biotechnology Journal 2022. [DOI: 10.1016/j.csbj.2022.02.003] [Reference Citation Analysis]
3 Jin H, Hu G, Sun C, Duan Y, Zhang Z, Liu Z, Zhao XM, Chen WH. mBodyMap: a curated database for microbes across human body and their associations with health and diseases. Nucleic Acids Res 2021:gkab973. [PMID: 34718713 DOI: 10.1093/nar/gkab973] [Reference Citation Analysis]
4 Jiang P, Wu S, Luo Q, Zhao XM, Chen WH. Metagenomic Analysis of Common Intestinal Diseases Reveals Relationships among Microbial Signatures and Powers Multidisease Diagnostic Models. mSystems 2021;6:e00112-21. [PMID: 33947803 DOI: 10.1128/mSystems.00112-21] [Reference Citation Analysis]
5 Liu C, Du MX, Abuduaini R, Yu HY, Li DH, Wang YJ, Zhou N, Jiang MZ, Niu PX, Han SS, Chen HH, Shi WY, Wu L, Xin YH, Ma J, Zhou Y, Jiang CY, Liu HW, Liu SJ. Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank. Microbiome 2021;9:119. [PMID: 34020714 DOI: 10.1186/s40168-021-01064-3] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
6 Cheng TY, Li JX, Chen JY, Chen PY, Ma LR, Zhang GL, Yan PY. Gut microbiota: a potential target for traditional Chinese medicine intervention in coronary heart disease. Chin Med 2021;16:108. [PMID: 34686199 DOI: 10.1186/s13020-021-00516-0] [Reference Citation Analysis]
7 Wang YY, Kang H, Xu T, Hao L, Bao Y, Jia P. CeDR Atlas: a knowledgebase of cellular drug response. Nucleic Acids Res 2021:gkab897. [PMID: 34634794 DOI: 10.1093/nar/gkab897] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
8 Chattopadhyay I, Nandi D, Nag A. The pint- sized powerhouse: Illuminating the mighty role of the gut microbiome in improving the outcome of anti- cancer therapy. Semin Cancer Biol 2021;70:98-111. [PMID: 32739479 DOI: 10.1016/j.semcancer.2020.07.012] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
9 Haga SB. Individualizing pharmacogenomic test results in the context of the microbiome. Per Med 2020;17:459-68. [PMID: 33026284 DOI: 10.2217/pme-2020-0077] [Cited by in Crossref: 1] [Article Influence: 0.5] [Reference Citation Analysis]
10 Lu H, Gao NL, Tong F, Wang J, Li H, Zhang R, Ma H, Yang N, Zhang Y, Wang Y, Liang Z, Zeng H, Chen WH, Dong X. Alterations of the Human Lung and Gut Microbiomes in Non-Small Cell Lung Carcinomas and Distant Metastasis. Microbiol Spectr 2021;:e0080221. [PMID: 34787462 DOI: 10.1128/Spectrum.00802-21] [Reference Citation Analysis]
11 Fan L, Qi Y, Qu S, Chen X, Li A, Hendi M, Xu C, Wang L, Hou T, Si J, Chen S. B. adolescentis ameliorates chronic colitis by regulating Treg/Th2 response and gut microbiota remodeling. Gut Microbes 2021;13:1-17. [PMID: 33557671 DOI: 10.1080/19490976.2020.1826746] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
12 Dai D, Zhu J, Sun C, Li M, Liu J, Wu S, Ning K, He LJ, Zhao XM, Chen WH. GMrepo v2: a curated human gut microbiome database with special focus on disease markers and cross-dataset comparison. Nucleic Acids Res 2021:gkab1019. [PMID: 34788838 DOI: 10.1093/nar/gkab1019] [Reference Citation Analysis]
13 Lymberopoulos E, Gentili GI, Alomari M, Sharma N. Topological Data Analysis Highlights Novel Geographical Signatures of the Human Gut Microbiome. Front Artif Intell 2021;4:680564. [PMID: 34490420 DOI: 10.3389/frai.2021.680564] [Reference Citation Analysis]
14 Rabe A, Gesell Salazar M, Völker U. Bottom-Up Community Proteome Analysis of Saliva Samples and Tongue Swabs by Data-Dependent Acquisition Nano LC-MS/MS Mass Spectrometry. Methods Mol Biol 2021;2327:221-38. [PMID: 34410648 DOI: 10.1007/978-1-0716-1518-8_13] [Reference Citation Analysis]
15 Yang F, Zou Q. DisBalance: a platform to automatically build balance-based disease prediction models and discover microbial biomarkers from microbiome data. Brief Bioinform 2021:bbab094. [PMID: 33834198 DOI: 10.1093/bib/bbab094] [Reference Citation Analysis]
16 Bellais S, Nehlich M, Ania M, Duquenoy A, Mazier W, van den Engh G, Baijer J, Treichel NS, Clavel T, Belotserkovsky I, Thomas V. Species-targeted sorting and cultivation of commensal bacteria from the gut microbiome using flow cytometry under anaerobic conditions. Microbiome 2022;10:24. [PMID: 35115054 DOI: 10.1186/s40168-021-01206-7] [Reference Citation Analysis]
17 De Filippis F, Pasolli E, Ercolini D. The food-gut axis: lactic acid bacteria and their link to food, the gut microbiome and human health. FEMS Microbiol Rev 2020;44:454-89. [PMID: 32556166 DOI: 10.1093/femsre/fuaa015] [Cited by in Crossref: 16] [Cited by in F6Publishing: 15] [Article Influence: 16.0] [Reference Citation Analysis]
18 Jing G, Liu L, Wang Z, Zhang Y, Qian L, Gao C, Zhang M, Li M, Zhang Z, Liu X, Xu J, Su X. Microbiome Search Engine 2: a Platform for Taxonomic and Functional Search of Global Microbiomes on the Whole-Microbiome Level. mSystems 2021;6:e00943-20. [PMID: 33468706 DOI: 10.1128/mSystems.00943-20] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 4.0] [Reference Citation Analysis]
19 Guo M, Liu X, Tan Y, Kang F, Zhu X, Fan X, Wang C, Wang R, Liu Y, Qin X, Jiang M, Wang X. Sucralose enhances the susceptibility to dextran sulfate sodium (DSS) induced colitis in mice with changes in gut microbiota. Food Funct 2021;12:9380-90. [PMID: 34606537 DOI: 10.1039/d1fo01351c] [Reference Citation Analysis]
20 Ahlinder J, Svedberg AL, Nystedt A, Dryselius R, Jacobsson K, Hägglund M, Brindefalk B, Forsman M, Ottoson J, Troell K. Use of metagenomic microbial source tracking to investigate the source of a foodborne outbreak of cryptosporidiosis. Food Waterborne Parasitol 2022;26:e00142. [PMID: 35024477 DOI: 10.1016/j.fawpar.2021.e00142] [Reference Citation Analysis]
21 Xu H, Zhang Y, Wang P, Zhang J, Chen H, Zhang L, Du X, Zhao C, Wu D, Liu F, Yang H, Liu C. A comprehensive review of integrative pharmacology-based investigation: A paradigm shift in traditional Chinese medicine. Acta Pharm Sin B 2021;11:1379-99. [PMID: 34221858 DOI: 10.1016/j.apsb.2021.03.024] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
22 Cheng L, Qi C, Yang H, Lu M, Cai Y, Fu T, Ren J, Jin Q, Zhang X. gutMGene: a comprehensive database for target genes of gut microbes and microbial metabolites. Nucleic Acids Res 2021:gkab786. [PMID: 34500458 DOI: 10.1093/nar/gkab786] [Cited by in Crossref: 4] [Article Influence: 4.0] [Reference Citation Analysis]
23 Yang F, Zou Q, Gao B. GutBalance: a server for the human gut microbiome-based disease prediction and biomarker discovery with compositionality addressed. Brief Bioinform 2021:bbaa436. [PMID: 33515036 DOI: 10.1093/bib/bbaa436] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
24 Jiang R, Li WV, Li JJ. mbImpute: an accurate and robust imputation method for microbiome data. Genome Biol 2021;22:192. [PMID: 34183041 DOI: 10.1186/s13059-021-02400-4] [Reference Citation Analysis]
25 Yang J, Park J, Jung Y, Chun J. AMDB: a database of animal gut microbial communities with manually curated metadata. Nucleic Acids Res 2021:gkab1009. [PMID: 34747470 DOI: 10.1093/nar/gkab1009] [Reference Citation Analysis]
26 Zhang Q, Yu K, Li S, Zhang X, Zhao Q, Zhao X, Liu Z, Cheng H, Liu ZX, Li X. gutMEGA: a database of the human gut MEtaGenome Atlas. Brief Bioinform. 2020;. [PMID: 32496513 DOI: 10.1093/bib/bbaa082] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]
27 Tang J, Wu X, Mou M, Wang C, Wang L, Li F, Guo M, Yin J, Xie W, Wang X, Wang Y, Ding Y, Xue W, Zhu F. GIMICA: host genetic and immune factors shaping human microbiota. Nucleic Acids Res 2021;49:D715-22. [PMID: 33045729 DOI: 10.1093/nar/gkaa851] [Cited by in Crossref: 4] [Cited by in F6Publishing: 8] [Article Influence: 4.0] [Reference Citation Analysis]
28 Wang W, Xiao Y, Wang X, Zhou Y, Wang T, Xv C, Shen BY. Disordered Gut Microbiota in Children Who Have Chronic Pancreatitis and Different Functional Gene Mutations. Clin Transl Gastroenterol 2020;11:e00150. [PMID: 32352720 DOI: 10.14309/ctg.0000000000000150] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
29 Ghannam RB, Techtmann SM. Machine learning applications in microbial ecology, human microbiome studies, and environmental monitoring. Comput Struct Biotechnol J 2021;19:1092-107. [PMID: 33680353 DOI: 10.1016/j.csbj.2021.01.028] [Cited by in Crossref: 6] [Cited by in F6Publishing: 3] [Article Influence: 6.0] [Reference Citation Analysis]
30 Yang F, Zou Q. mAML: an automated machine learning pipeline with a microbiome repository for human disease classification. Database (Oxford) 2020;2020:baaa050. [PMID: 32588040 DOI: 10.1093/database/baaa050] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 5.0] [Reference Citation Analysis]
31 Yang Y, Li L, Xu C, Wang Y, Wang Z, Chen M, Jiang Z, Pan J, Yang C, Li X, Song K, Yan J, Xie W, Wu X, Chen Z, Yuan Y, Zheng S, Yan J, Huang J, Qiu F. Cross-talk between the gut microbiota and monocyte-like macrophages mediates an inflammatory response to promote colitis-associated tumourigenesis. Gut 2020:gutjnl-2020-320777. [PMID: 33122176 DOI: 10.1136/gutjnl-2020-320777] [Cited by in Crossref: 7] [Cited by in F6Publishing: 5] [Article Influence: 3.5] [Reference Citation Analysis]