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Cited by in F6Publishing
For: Gao NL, Zhang C, Zhang Z, Hu S, Lercher MJ, Zhao XM, Bork P, Liu Z, Chen WH. MVP: a microbe-phage interaction database. Nucleic Acids Res 2018;46:D700-7. [PMID: 29177508 DOI: 10.1093/nar/gkx1124] [Cited by in Crossref: 31] [Cited by in F6Publishing: 20] [Article Influence: 10.3] [Reference Citation Analysis]
Number Citing Articles
1 Wu S, Sun C, Li Y, Wang T, Jia L, Lai S, Yang Y, Luo P, Dai D, Yang YQ, Luo Q, Gao NL, Ning K, He LJ, Zhao XM, Chen WH. GMrepo: a database of curated and consistently annotated human gut metagenomes. Nucleic Acids Res 2020;48:D545-53. [PMID: 31504765 DOI: 10.1093/nar/gkz764] [Cited by in Crossref: 22] [Cited by in F6Publishing: 20] [Article Influence: 11.0] [Reference Citation Analysis]
2 Brockhurst MA, Harrison E, Hall JP, Richards T, Mcnally A, Maclean C. The Ecology and Evolution of Pangenomes. Current Biology 2019;29:R1094-103. [DOI: 10.1016/j.cub.2019.08.012] [Cited by in Crossref: 68] [Cited by in F6Publishing: 46] [Article Influence: 22.7] [Reference Citation Analysis]
3 Gao NL, Chen J, Wang T, Lercher MJ, Chen WH. Prokaryotic Genome Expansion Is Facilitated by Phages and Plasmids but Impaired by CRISPR. Front Microbiol 2019;10:2254. [PMID: 31681190 DOI: 10.3389/fmicb.2019.02254] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
4 Jin H, Hu G, Sun C, Duan Y, Zhang Z, Liu Z, Zhao XM, Chen WH. mBodyMap: a curated database for microbes across human body and their associations with health and diseases. Nucleic Acids Res 2021:gkab973. [PMID: 34718713 DOI: 10.1093/nar/gkab973] [Reference Citation Analysis]
5 Mortensen K, Lam TJ, Ye Y. Comparison of CRISPR-Cas Immune Systems in Healthcare-Related Pathogens. Front Microbiol 2021;12:758782. [PMID: 34759910 DOI: 10.3389/fmicb.2021.758782] [Reference Citation Analysis]
6 Meier-Kolthoff JP, Uchiyama J, Yahara H, Paez-Espino D, Yahara K. Investigation of recombination-intense viral groups and their genes in the Earth's virome. Sci Rep 2018;8:11496. [PMID: 30065291 DOI: 10.1038/s41598-018-29272-2] [Cited by in Crossref: 9] [Cited by in F6Publishing: 5] [Article Influence: 2.3] [Reference Citation Analysis]
7 Roux S, Páez-Espino D, Chen IA, Palaniappan K, Ratner A, Chu K, Reddy TBK, Nayfach S, Schulz F, Call L, Neches RY, Woyke T, Ivanova NN, Eloe-Fadrosh EA, Kyrpides NC. IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses. Nucleic Acids Res 2021;49:D764-75. [PMID: 33137183 DOI: 10.1093/nar/gkaa946] [Cited by in Crossref: 31] [Cited by in F6Publishing: 23] [Article Influence: 31.0] [Reference Citation Analysis]
8 Bleriot I, Trastoy R, Blasco L, Fernández-Cuenca F, Ambroa A, Fernández-García L, Pacios O, Perez-Nadales E, Torre-Cisneros J, Oteo-Iglesias J, Navarro F, Miró E, Pascual A, Bou G, Martínez-Martínez L, Tomas M. Genomic analysis of 40 prophages located in the genomes of 16 carbapenemase-producing clinical strains of Klebsiella pneumoniae. Microb Genom 2020;6. [PMID: 32375972 DOI: 10.1099/mgen.0.000369] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
9 Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nat Biotechnol 2019;37:29-37. [PMID: 30556814 DOI: 10.1038/nbt.4306] [Cited by in Crossref: 149] [Cited by in F6Publishing: 110] [Article Influence: 37.3] [Reference Citation Analysis]
10 Zielezinski A, Barylski J, Karlowski WM. Taxonomy-aware, sequence similarity ranking reliably predicts phage-host relationships. BMC Biol 2021;19:223. [PMID: 34625070 DOI: 10.1186/s12915-021-01146-6] [Reference Citation Analysis]
11 Baltoumas FA, Zafeiropoulou S, Karatzas E, Koutrouli M, Thanati F, Voutsadaki K, Gkonta M, Hotova J, Kasionis I, Hatzis P, Pavlopoulos GA. Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. Biomolecules 2021;11:1245. [PMID: 34439912 DOI: 10.3390/biom11081245] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
12 Sudhakar P, Machiels K, Verstockt B, Korcsmaros T, Vermeire S. Computational Biology and Machine Learning Approaches to Understand Mechanistic Microbiome-Host Interactions.Front Microbiol. 2021;12:618856. [PMID: 34046017 DOI: 10.3389/fmicb.2021.618856] [Cited by in F6Publishing: 2] [Reference Citation Analysis]
13 Chng KR, Li C, Bertrand D, Ng AHQ, Kwah JS, Low HM, Tong C, Natrajan M, Zhang MH, Xu L, Ko KKK, Ho EXP, Av-Shalom TV, Teo JWP, Khor CC, Chen SL, Mason CE, Ng OT, Marimuthu K, Ang B, Nagarajan N; MetaSUB Consortium. Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment. Nat Med 2020;26:941-51. [PMID: 32514171 DOI: 10.1038/s41591-020-0894-4] [Cited by in Crossref: 29] [Cited by in F6Publishing: 27] [Article Influence: 14.5] [Reference Citation Analysis]
14 Young F, Rogers S, Robertson DL. Predicting host taxonomic information from viral genomes: A comparison of feature representations. PLoS Comput Biol 2020;16:e1007894. [PMID: 32453718 DOI: 10.1371/journal.pcbi.1007894] [Cited by in Crossref: 8] [Cited by in F6Publishing: 5] [Article Influence: 4.0] [Reference Citation Analysis]
15 He B, Gong W, Yan X, Zhao Z, Yang L, Tan Z, Xu L, Zhu A, Zhang J, Rao J, Yu X, Jiang J, Lu Z, Zhang Y, Wu J, Li Y, Shi Y, Jiang Q, Chen X, Tu C. Viral Metagenome-Based Precision Surveillance of Pig Population at Large Scale Reveals Viromic Signatures of Sample Types and Influence of Farming Management on Pig Virome. mSystems 2021;6:e0042021. [PMID: 34100634 DOI: 10.1128/mSystems.00420-21] [Reference Citation Analysis]
16 Rands CM, Starikova EV, Brüssow H, Kriventseva EV, Govorun VM, Zdobnov EM. ACI‐1 beta‐lactamase is widespread across human gut microbiomes in Negativicutes due to transposons harboured by tailed prophages. Environmental Microbiology 2018;20:2288-300. [DOI: 10.1111/1462-2920.14276] [Cited by in Crossref: 9] [Cited by in F6Publishing: 5] [Article Influence: 2.3] [Reference Citation Analysis]
17 Rigden DJ, Fernández XM. The 2018 Nucleic Acids Research database issue and the online molecular biology database collection. Nucleic Acids Res 2018;46:D1-7. [PMID: 29316735 DOI: 10.1093/nar/gkx1235] [Cited by in Crossref: 52] [Cited by in F6Publishing: 34] [Article Influence: 17.3] [Reference Citation Analysis]
18 Kumar J, Sharma N, Kaushal G, Samurailatpam S, Sahoo D, Rai AK, Singh SP. Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front Microbiol 2019;10:1744. [PMID: 31428064 DOI: 10.3389/fmicb.2019.01744] [Cited by in Crossref: 17] [Cited by in F6Publishing: 8] [Article Influence: 5.7] [Reference Citation Analysis]
19 Nishiyama H, Endo H, Blanc-Mathieu R, Ogata H. Ecological Structuring of Temperate Bacteriophages in the Inflammatory Bowel Disease-Affected Gut. Microorganisms 2020;8:E1663. [PMID: 33121006 DOI: 10.3390/microorganisms8111663] [Reference Citation Analysis]
20 Li M, Zhang W. PHIAF: prediction of phage-host interactions with GAN-based data augmentation and sequence-based feature fusion. Brief Bioinform 2021:bbab348. [PMID: 34472593 DOI: 10.1093/bib/bbab348] [Reference Citation Analysis]
21 Moreno-Gallego JL, Chou SP, Di Rienzi SC, Goodrich JK, Spector TD, Bell JT, Youngblut ND, Hewson I, Reyes A, Ley RE. Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins. Cell Host Microbe 2019;25:261-272.e5. [PMID: 30763537 DOI: 10.1016/j.chom.2019.01.019] [Cited by in Crossref: 72] [Cited by in F6Publishing: 60] [Article Influence: 24.0] [Reference Citation Analysis]
22 Khan Mirzaei M, Xue J, Costa R, Ru J, Schulz S, Taranu ZE, Deng L. Challenges of Studying the Human Virome - Relevant Emerging Technologies. Trends Microbiol 2021;29:171-81. [PMID: 32622559 DOI: 10.1016/j.tim.2020.05.021] [Cited by in Crossref: 8] [Cited by in F6Publishing: 9] [Article Influence: 4.0] [Reference Citation Analysis]
23 Rands CM, Brüssow H, Zdobnov EM. Comparative genomics groups phages of Negativicutes and classical Firmicutes despite different Gram-staining properties. Environ Microbiol 2019;21:3989-4001. [PMID: 31314945 DOI: 10.1111/1462-2920.14746] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 0.7] [Reference Citation Analysis]
24 Menor-Flores M, Vega-Rodríguez MA, Molina F. Computational design of phage cocktails based on phage-bacteria infection networks. Comput Biol Med 2022;142:105186. [PMID: 34998221 DOI: 10.1016/j.compbiomed.2021.105186] [Reference Citation Analysis]
25 Lai S, Jia L, Subramanian B, Pan S, Zhang J, Dong Y, Chen WH, Zhao XM. mMGE: a database for human metagenomic extrachromosomal mobile genetic elements. Nucleic Acids Res 2021;49:D783-91. [PMID: 33074335 DOI: 10.1093/nar/gkaa869] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
26 Luo L, Wang H, Payne MJ, Liang C, Bai L, Zheng H, Zhang Z, Zhang L, Zhang X, Yan G, Zou N, Chen X, Wan Z, Xiong Y, Lan R, Li Q. Comparative genomics of Chinese and international isolates of Escherichia albertii: population structure and evolution of virulence and antimicrobial resistance. Microb Genom 2021;7. [PMID: 34882085 DOI: 10.1099/mgen.0.000710] [Reference Citation Analysis]