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For: Thoendel MJ, Jeraldo PR, Greenwood-Quaintance KE, Yao JZ, Chia N, Hanssen AD, Abdel MP, Patel R. Identification of Prosthetic Joint Infection Pathogens Using a Shotgun Metagenomics Approach. Clin Infect Dis 2018;67:1333-8. [PMID: 29648630 DOI: 10.1093/cid/ciy303] [Cited by in Crossref: 67] [Cited by in F6Publishing: 63] [Article Influence: 22.3] [Reference Citation Analysis]
Number Citing Articles
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9 Ramchandar N, Burns J, Coufal NG, Pennock A, Briggs B, Stinnett R, Bradley J, Arnold J, Liu GY, Pring M, Upasani VV, Rickert K, Dimmock D, Chiu C, Farnaes L, Cannavino C. Use of Metagenomic Next-Generation Sequencing to Identify Pathogens in Pediatric Osteoarticular Infections. Open Forum Infect Dis 2021;8:ofab346. [PMID: 34322569 DOI: 10.1093/ofid/ofab346] [Reference Citation Analysis]
10 Esteban J, Gómez-Barrena E. An update about molecular biology techniques to detect orthopaedic implant-related infections. EFORT Open Rev 2021;6:93-100. [PMID: 33828851 DOI: 10.1302/2058-5241.6.200118] [Reference Citation Analysis]
11 Chen H, Fan C, Gao H, Yin Y, Wang X, Zhang Y, Wang H. Leishmaniasis Diagnosis via Metagenomic Next-Generation Sequencing. Front Cell Infect Microbiol 2020;10:528884. [PMID: 33072623 DOI: 10.3389/fcimb.2020.528884] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
12 Huang C, Chen H, Ding Y, Ma X, Zhu H, Zhang S, Du W, Summah HD, Shi G, Feng Y. A Microbial World: Could Metagenomic Next-Generation Sequencing Be Involved in Acute Respiratory Failure? Front Cell Infect Microbiol 2021;11:738074. [PMID: 34671569 DOI: 10.3389/fcimb.2021.738074] [Reference Citation Analysis]
13 Sanabria A, Hjerde E, Johannessen M, Sollid JE, Simonsen GS, Hanssen AM. Shotgun-Metagenomics on Positive Blood Culture Bottles Inoculated With Prosthetic Joint Tissue: A Proof of Concept Study. Front Microbiol 2020;11:1687. [PMID: 32765476 DOI: 10.3389/fmicb.2020.01687] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
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15 Miao Q, Ma Y, Wang Q, Pan J, Zhang Y, Jin W, Yao Y, Su Y, Huang Y, Wang M, Li B, Li H, Zhou C, Li C, Ye M, Xu X, Li Y, Hu B. Microbiological Diagnostic Performance of Metagenomic Next-generation Sequencing When Applied to Clinical Practice. Clin Infect Dis. 2018;67:S231-S240. [PMID: 30423048 DOI: 10.1093/cid/ciy693] [Cited by in Crossref: 94] [Cited by in F6Publishing: 102] [Article Influence: 31.3] [Reference Citation Analysis]
16 Wang C, Huang Z, Li W, Fang X, Zhang W. Can metagenomic next-generation sequencing identify the pathogens responsible for culture-negative prosthetic joint infection? BMC Infect Dis 2020;20:253. [PMID: 32228597 DOI: 10.1186/s12879-020-04955-2] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 3.5] [Reference Citation Analysis]
17 Thoendel M, Jeraldo P, Greenwood-Quaintance KE, Yao J, Chia N, Hanssen AD, Abdel MP, Patel R. Comparison of Three Commercial Tools for Metagenomic Shotgun Sequencing Analysis. J Clin Microbiol 2020;58:e00981-19. [PMID: 31826963 DOI: 10.1128/JCM.00981-19] [Cited by in Crossref: 3] [Article Influence: 1.5] [Reference Citation Analysis]
18 Masters EA, Ricciardi BF, Bentley KLM, Moriarty TF, Schwarz EM, Muthukrishnan G. Skeletal infections: microbial pathogenesis, immunity and clinical management. Nat Rev Microbiol 2022. [PMID: 35169289 DOI: 10.1038/s41579-022-00686-0] [Reference Citation Analysis]
19 Dekker JP. Metagenomics for Clinical Infectious Disease Diagnostics Steps Closer to Reality. J Clin Microbiol 2018;56:e00850-18. [PMID: 29976592 DOI: 10.1128/JCM.00850-18] [Cited by in Crossref: 19] [Cited by in F6Publishing: 7] [Article Influence: 4.8] [Reference Citation Analysis]
20 Shi TB, Fang XY, Wang CX, Cai YQ, Li WB, Zhang WM. Rare Occurrence of Acute Hematogenous Periprosthetic Joint Infection Due to Fusobacterium Nucleatum in the Background of a Dental Procedure: A Case Report. Orthop Surg 2020;12:2026-30. [PMID: 33150710 DOI: 10.1111/os.12844] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
21 Gu W, Talevich E, Hsu E, Qi Z, Urisman A, Federman S, Gopez A, Arevalo S, Gottschall M, Liao L, Tung J, Chen L, Lim H, Ho C, Kasowski M, Oak J, Holmes BJ, Yeh I, Yu J, Wang L, Miller S, DeRisi JL, Prakash S, Simko J, Chiu CY. Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids. Genome Med 2021;13:98. [PMID: 34074327 DOI: 10.1186/s13073-021-00912-z] [Reference Citation Analysis]
22 Tiew PY, Mac Aogain M, Ali NABM, Thng KX, Goh K, Lau KJX, Chotirmall SH. The Mycobiome in Health and Disease: Emerging Concepts, Methodologies and Challenges. Mycopathologia 2020;185:207-31. [PMID: 31894501 DOI: 10.1007/s11046-019-00413-z] [Cited by in Crossref: 11] [Cited by in F6Publishing: 13] [Article Influence: 5.5] [Reference Citation Analysis]
23 d’Humières C, Gaïa N, Gueye S, de Lastours V, Leflon-guibout V, Maataoui N, Duprilot M, Lecronier M, Rousseau M, Gamany N, Lescure F, Senard O, Deconinck L, Dollat M, Isernia V, Le Hur A, Petitjean M, Nazimoudine A, Le Gac S, Chalal S, Ferreira S, Lazarevic V, Guigon G, Gervasi G, Armand-lefèvre L, Schrenzel J, Ruppé E. Contribution of Clinical Metagenomics to the Diagnosis of Bone and Joint Infections. Front Microbiol 2022;13:863777. [DOI: 10.3389/fmicb.2022.863777] [Reference Citation Analysis]
24 Achermann Y, Zinkernagel AS. Identifying the Pathogen by Multiplex Polymerase Chain Reaction in Bone and Joint Infections: Challenges and Future. J Rheumatol 2018;45:1497-500. [PMID: 30385695 DOI: 10.3899/jrheum.180866] [Reference Citation Analysis]
25 Flurin L, Greenwood-Quaintance KE, Esper RN, Sanchez-Sotelo J, Patel R. Sonication improves microbiologic diagnosis of periprosthetic elbow infection. J Shoulder Elbow Surg 2021;30:1741-9. [PMID: 33609642 DOI: 10.1016/j.jse.2021.01.023] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
26 Goh GS, Parvizi J. Think Twice before Prescribing Antibiotics for That Swollen Knee: The Influence of Antibiotics on the Diagnosis of Periprosthetic Joint Infection. Antibiotics (Basel) 2021;10:114. [PMID: 33530305 DOI: 10.3390/antibiotics10020114] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
27 Charretier Y, Lazarevic V, Schrenzel J, Ruppé E. Messages from the Fourth International Conference on Clinical Metagenomics. Microbes Infect 2020;22:635-41. [PMID: 32828958 DOI: 10.1016/j.micinf.2020.07.007] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 1.5] [Reference Citation Analysis]
28 Doll EV, Staib L, Huptas C, Scherer S, Wenning M. Facklamia lactis sp. nov., isolated from raw milk. Int J Syst Evol Microbiol 2021;71. [PMID: 34252020 DOI: 10.1099/ijsem.0.004869] [Cited by in Crossref: 6] [Article Influence: 6.0] [Reference Citation Analysis]
29 Lipof JS, Jones CMC, Daiss J, Oh I. Comparative study of culture, next-generation sequencing, and immunoassay for identification of pathogen in diabetic foot ulcer. J Orthop Res 2021. [PMID: 33543785 DOI: 10.1002/jor.25001] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
30 Carr C, Wilcox H, Burton JP, Menon S, Al KF, O'Gorman D, Lanting BA, Vasarhelyi EM, Neufeld M, Teeter MG. Deciphering the low abundance microbiota of presumed aseptic hip and knee implants. PLoS One 2021;16:e0257471. [PMID: 34520499 DOI: 10.1371/journal.pone.0257471] [Reference Citation Analysis]
31 Jun KI, Oh BL, Kim N, Shin JY, Moon J. Microbial diagnosis of endophthalmitis using nanopore amplicon sequencing. Int J Med Microbiol 2021;311:151505. [PMID: 33930723 DOI: 10.1016/j.ijmm.2021.151505] [Reference Citation Analysis]
32 Flurin L, Wolf MJ, Greenwood-Quaintance KE, Sanchez-Sotelo J, Patel R. Targeted next generation sequencing for elbow periprosthetic joint infection diagnosis. Diagn Microbiol Infect Dis 2021;101:115448. [PMID: 34224945 DOI: 10.1016/j.diagmicrobio.2021.115448] [Reference Citation Analysis]
33 Patel R. Advances in Testing for Infectious Diseases—Looking Back and Projecting Forward. Clinical Chemistry 2022;68:10-5. [DOI: 10.1093/clinchem/hvab110] [Reference Citation Analysis]
34 Huang Z, Li W, Lee GC, Fang X, Xing L, Yang B, Lin J, Zhang W. Metagenomic next-generation sequencing of synovial fluid demonstrates high accuracy in prosthetic joint infection diagnostics: mNGS for diagnosing PJI. Bone Joint Res 2020;9:440-9. [PMID: 32864114 DOI: 10.1302/2046-3758.97.BJR-2019-0325.R2] [Cited by in Crossref: 9] [Cited by in F6Publishing: 5] [Article Influence: 4.5] [Reference Citation Analysis]
35 Siqueira M, Chisari E, Yacovelli S, Goswami K, Brownfield M, Shohat N, Parvizi J. Commercial Synovial Antibody Testing is no better than Traditional Culture in Identification of Pathogen(s) Causing Periprosthetic Joint Infection. J Arthroplasty 2021:S0883-5403(21)00964-5. [PMID: 34968649 DOI: 10.1016/j.arth.2021.12.029] [Reference Citation Analysis]
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37 Li M, Zeng Y, Wu Y, Si H, Bao X, Shen B. Performance of Sequencing Assays in Diagnosis of Prosthetic Joint Infection: A Systematic Review and Meta-Analysis. J Arthroplasty 2019;34:1514-1522.e4. [PMID: 31005434 DOI: 10.1016/j.arth.2019.02.044] [Cited by in Crossref: 11] [Cited by in F6Publishing: 8] [Article Influence: 3.7] [Reference Citation Analysis]
38 Zhong Y, Xu F, Wu J, Schubert J, Li MM. Application of Next Generation Sequencing in Laboratory Medicine. Ann Lab Med 2021;41:25-43. [PMID: 32829577 DOI: 10.3343/alm.2021.41.1.25] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 4.0] [Reference Citation Analysis]
39 Kheir MM. CORR Insights®: Measurement of Serum Anti-staphylococcal Antibodies Increases Positive Predictive Value of Preoperative Aspiration for Hip Prosthetic Joint Infection. Clin Orthop Relat Res 2020;478:2798-800. [PMID: 32769540 DOI: 10.1097/CORR.0000000000001426] [Reference Citation Analysis]
40 Wasterlain AS, Goswami K, Ghasemi SA, Parvizi J. Diagnosis of Periprosthetic Infection: Recent Developments. J Bone Joint Surg Am 2020;102:1366-75. [PMID: 32769605 DOI: 10.2106/JBJS.19.00598] [Cited by in Crossref: 4] [Cited by in F6Publishing: 1] [Article Influence: 4.0] [Reference Citation Analysis]
41 Park KH, Patel R. Diagnostic Methods for Prosthetic Joint Infection in Korea. Infect Chemother 2018;50:199-209. [PMID: 30270579 DOI: 10.3947/ic.2018.50.3.199] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.8] [Reference Citation Analysis]
42 Goswami K, Parvizi J. Culture-negative periprosthetic joint infection: is there a diagnostic role for next-generation sequencing? Expert Rev Mol Diagn 2020;20:269-72. [PMID: 31858850 DOI: 10.1080/14737159.2020.1707080] [Cited by in Crossref: 6] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]
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44 Guo LY, Feng WY, Guo X, Liu B, Liu G, Dong J. The advantages of next-generation sequencing technology in the detection of different sources of abscess. J Infect 2019;78:75-86. [PMID: 30098322 DOI: 10.1016/j.jinf.2018.08.002] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 2.5] [Reference Citation Analysis]
45 Anagnostakos K, Grzega C, Sahan I, Geipel U, Becker SL. Occurrence of Rare Pathogens at the Site of Periprosthetic Hip and Knee Joint Infections: A Retrospective, Single-Center Study. Antibiotics (Basel) 2021;10:882. [PMID: 34356802 DOI: 10.3390/antibiotics10070882] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
46 He R, Wang Q, Wang J, Tang J, Shen H, Zhang X. Better choice of the type of specimen used for untargeted metagenomic sequencing in the diagnosis of periprosthetic joint infections. Bone Joint J 2021;103-B:923-30. [PMID: 33934659 DOI: 10.1302/0301-620X.103B5.BJJ-2020-0745.R1] [Reference Citation Analysis]
47 Kalbian I, Park JW, Goswami K, Lee Y, Parvizi J, Koo K. Culture-negative periprosthetic joint infection: prevalence, aetiology, evaluation, recommendations, and treatment. International Orthopaedics (SICOT) 2020;44:1255-61. [DOI: 10.1007/s00264-020-04627-5] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 5.0] [Reference Citation Analysis]
48 Wang G, Xu N, Yang L, Zheng F, Sai L, Zhou J, Yang S. Community acquired Stenotrophomonas maltophilia discitis: Diagnosis aided by shotgun metagenomic sequencing. Int J Infect Dis 2019;81:1-3. [PMID: 30684744 DOI: 10.1016/j.ijid.2019.01.032] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
49 Larkin PMK, Multani A, Beaird OE, Dayo AJ, Fishbein GA, Yang S. A Collaborative Tale of Diagnosing and Treating Chronic Pulmonary Aspergillosis, from the Perspectives of Clinical Microbiologists, Surgical Pathologists, and Infectious Disease Clinicians. J Fungi (Basel) 2020;6:E106. [PMID: 32664547 DOI: 10.3390/jof6030106] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
50 Tang Y, Zhao D, Wang S, Yi Q, Xia Y, Geng B. Diagnostic Value of Next-Generation Sequencing in Periprosthetic Joint Infection: A Systematic Review. Orthop Surg 2021. [PMID: 34935279 DOI: 10.1111/os.13191] [Reference Citation Analysis]
51 Zhang HC, Ai JW, Cui P, Zhu YM, Hong-Long W, Li YJ, Zhang WH. Incremental value of metagenomic next generation sequencing for the diagnosis of suspected focal infection in adults. J Infect 2019;79:419-25. [PMID: 31442461 DOI: 10.1016/j.jinf.2019.08.012] [Cited by in Crossref: 19] [Cited by in F6Publishing: 21] [Article Influence: 6.3] [Reference Citation Analysis]
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54 McAdam AJ. Shotgun Metagenomic Detection of Pathogens: a Micro-Comic Strip. J Clin Microbiol 2018;56:e00799-18. [PMID: 30049804 DOI: 10.1128/JCM.00799-18] [Cited by in Crossref: 1] [Article Influence: 0.3] [Reference Citation Analysis]
55 Jiang J, Bai L, Yang W, Peng W, An J, Wu Y, Pan P, Li Y. Metagenomic Next-Generation Sequencing for the Diagnosis of Pneumocystis jirovecii Pneumonia in Non-HIV-Infected Patients: A Retrospective Study. Infect Dis Ther 2021;10:1733-45. [PMID: 34244957 DOI: 10.1007/s40121-021-00482-y] [Reference Citation Analysis]
56 Graf EH, Pancholi P. Appropriate Use and Future Directions of Molecular Diagnostic Testing. Curr Infect Dis Rep 2020;22:5. [PMID: 32030534 DOI: 10.1007/s11908-020-0714-5] [Cited by in Crossref: 5] [Cited by in F6Publishing: 7] [Article Influence: 2.5] [Reference Citation Analysis]
57 Zhao M, Tang K, Liu F, Zhou W, Fan J, Yan G, Qin S, Pang Y. Metagenomic Next-Generation Sequencing Improves Diagnosis of Osteoarticular Infections From Abscess Specimens: A Multicenter Retrospective Study. Front Microbiol 2020;11:2034. [PMID: 33042033 DOI: 10.3389/fmicb.2020.02034] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 2.5] [Reference Citation Analysis]
58 Yan Q, Wi YM, Thoendel MJ, Raval YS, Greenwood-Quaintance KE, Abdel MP, Jeraldo PR, Chia N, Patel R. Evaluation of the CosmosID Bioinformatics Platform for Prosthetic Joint-Associated Sonicate Fluid Shotgun Metagenomic Data Analysis. J Clin Microbiol 2019;57:e01182-18. [PMID: 30429253 DOI: 10.1128/JCM.01182-18] [Cited by in Crossref: 13] [Cited by in F6Publishing: 11] [Article Influence: 4.3] [Reference Citation Analysis]
59 Han D, Li Z, Li R, Tan P, Zhang R, Li J. mNGS in clinical microbiology laboratories: on the road to maturity. Crit Rev Microbiol 2019;45:668-85. [PMID: 31691607 DOI: 10.1080/1040841X.2019.1681933] [Cited by in Crossref: 23] [Cited by in F6Publishing: 21] [Article Influence: 7.7] [Reference Citation Analysis]
60 Street TL, Sanderson ND, Kolenda C, Kavanagh J, Pickford H, Hoosdally S, Cregan J, Taunt C, Jones E, Oakley S, Atkins BL, Dudareva M, McNally MA, O'Grady J, Crook DW, Eyre DW. Clinical Metagenomic Sequencing for Species Identification and Antimicrobial Resistance Prediction in Orthopedic Device Infection. J Clin Microbiol 2022;:e0215621. [PMID: 35354286 DOI: 10.1128/jcm.02156-21] [Reference Citation Analysis]
61 Asmerom B, Drobish I, Winckler B, Chiang L, Farnaes L, Beauchamp-Walters J, Bradley JS, Ramchandar N. Detection of Neisseria gonorrhoeae from Joint Aspirate by Metagenomic Sequencing in Disseminated Gonococcal Infection. J Pediatric Infect Dis Soc 2021;10:367-9. [PMID: 32964934 DOI: 10.1093/jpids/piaa108] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
62 Gamie Z, Karthikappallil D, Gamie E, Stamiris S, Kenanidis E, Tsiridis E. Molecular sequencing technologies in the diagnosis and management of prosthetic joint infections. Expert Rev Mol Diagn 2021;:1-21. [PMID: 33641572 DOI: 10.1080/14737159.2021.1894929] [Reference Citation Analysis]
63 Liu C, Li W, Zhang C, Pang F, Wang DW. Previously unexplored etiology for femoral head necrosis: Metagenomics detects no pathogens in necrotic femoral head tissue. World J Clin Cases 2022; 10(7): 2138-2146 [DOI: 10.12998/wjcc.v10.i7.2138] [Reference Citation Analysis]
64 Jacquier H, Fihman V, Amarsy R, Vicaut E, Bousson V, Cambau E, Crémieux AC, Delcey V, Hannouche D, Kaci R, Laredo JD, Meunier F, Nizard R, Ottaviani S, Parlier C, Richette P, Sellier P, Zadegan F, Lioté F, Berçot B; Molos Study Group . Benefits of Polymerase Chain Reaction Combined With Culture for the Diagnosis of Bone and Joint Infections: A Prospective Test Performance Study. Open Forum Infect Dis 2019;6:ofz511. [PMID: 31909081 DOI: 10.1093/ofid/ofz511] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 1.7] [Reference Citation Analysis]
65 Wang CX, Huang Z, Fang W, Zhang Z, Fang X, Li W, Yang B, Chen L, Liang X, Hu H, Shi D, Lee S, Zhang W. Preliminary assessment of nanopore-based metagenomic sequencing for the diagnosis of prosthetic joint infection. Int J Infect Dis 2020;97:54-9. [PMID: 32439542 DOI: 10.1016/j.ijid.2020.05.044] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]
66 Ferreira I, Lepuschitz S, Beisken S, Fiume G, Mrazek K, Frank BJH, Huber S, Knoll MA, von Haeseler A, Materna A, Hofstaetter JG, Posch AE, Weinberger J. Culture-Free Detection of Antibiotic Resistance Markers from Native Patient Samples by Hybridization Capture Sequencing. Microorganisms 2021;9:1672. [PMID: 34442751 DOI: 10.3390/microorganisms9081672] [Reference Citation Analysis]
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