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For: Chng KR, Li C, Bertrand D, Ng AHQ, Kwah JS, Low HM, Tong C, Natrajan M, Zhang MH, Xu L, Ko KKK, Ho EXP, Av-Shalom TV, Teo JWP, Khor CC, Chen SL, Mason CE, Ng OT, Marimuthu K, Ang B, Nagarajan N; MetaSUB Consortium. Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment. Nat Med 2020;26:941-51. [PMID: 32514171 DOI: 10.1038/s41591-020-0894-4] [Cited by in Crossref: 29] [Cited by in F6Publishing: 27] [Article Influence: 14.5] [Reference Citation Analysis]
Number Citing Articles
1 Zhang Z, Zhang Q, Wang T, Xu N, Lu T, Hong W, Penuelas J, Gillings M, Wang M, Gao W, Qian H. Assessment of global health risk of antibiotic resistance genes. Nat Commun 2022;13:1553. [PMID: 35322038 DOI: 10.1038/s41467-022-29283-8] [Cited by in Crossref: 5] [Cited by in F6Publishing: 3] [Article Influence: 5.0] [Reference Citation Analysis]
2 Blake KS, Choi J, Dantas G. Approaches for characterizing and tracking hospital-associated multidrug-resistant bacteria. Cell Mol Life Sci 2021;78:2585-606. [PMID: 33582841 DOI: 10.1007/s00018-020-03717-2] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
3 Min TT, Yamabhai M. Human Hexa-Histidine-Tagged Single-Chain Variable Fragments for Bioimaging of Bacterial Infections. ACS Omega 2021;6:762-74. [PMID: 33458528 DOI: 10.1021/acsomega.0c05340] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 3.0] [Reference Citation Analysis]
4 Iakovides M, Tsiamis G, Tziaras T, Stathopoulou P, Nikolaki S, Iakovides G, Stephanou EG. Two-year systematic investigation reveals alterations induced on chemical and bacteriome profile of PM2.5 by African dust incursions to the Mediterranean atmosphere. Sci Total Environ 2021;:151976. [PMID: 34843760 DOI: 10.1016/j.scitotenv.2021.151976] [Reference Citation Analysis]
5 Okeke IN, Feasey N, Parkhill J, Turner P, Limmathurotsakul D, Georgiou P, Holmes A, Peacock SJ. Leapfrogging laboratories: the promise and pitfalls of high-tech solutions for antimicrobial resistance surveillance in low-income settings. BMJ Glob Health 2020;5:e003622. [PMID: 33268385 DOI: 10.1136/bmjgh-2020-003622] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 5.0] [Reference Citation Analysis]
6 Wu N, Zhu T. Potential of Therapeutic Bacteriophages in Nosocomial Infection Management. Front Microbiol 2021;12:638094. [PMID: 33633717 DOI: 10.3389/fmicb.2021.638094] [Reference Citation Analysis]
7 de Abreu VAC, Perdigão J, Almeida S. Metagenomic Approaches to Analyze Antimicrobial Resistance: An Overview. Front Genet 2020;11:575592. [PMID: 33537056 DOI: 10.3389/fgene.2020.575592] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
8 Danko D, Bezdan D, Afshin EE, Ahsanuddin S, Bhattacharya C, Butler DJ, Chng KR, Donnellan D, Hecht J, Jackson K, Kuchin K, Karasikov M, Lyons A, Mak L, Meleshko D, Mustafa H, Mutai B, Neches RY, Ng A, Nikolayeva O, Nikolayeva T, Png E, Ryon KA, Sanchez JL, Shaaban H, Sierra MA, Thomas D, Young B, Abudayyeh OO, Alicea J, Bhattacharyya M, Blekhman R, Castro-Nallar E, Cañas AM, Chatziefthimiou AD, Crawford RW, De Filippis F, Deng Y, Desnues C, Dias-Neto E, Dybwad M, Elhaik E, Ercolini D, Frolova A, Gankin D, Gootenberg JS, Graf AB, Green DC, Hajirasouliha I, Hastings JJA, Hernandez M, Iraola G, Jang S, Kahles A, Kelly FJ, Knights K, Kyrpides NC, Łabaj PP, Lee PKH, Leung MHY, Ljungdahl PO, Mason-Buck G, McGrath K, Meydan C, Mongodin EF, Moraes MO, Nagarajan N, Nieto-Caballero M, Noushmehr H, Oliveira M, Ossowski S, Osuolale OO, Özcan O, Paez-Espino D, Rascovan N, Richard H, Rätsch G, Schriml LM, Semmler T, Sezerman OU, Shi L, Shi T, Siam R, Song LH, Suzuki H, Court DS, Tighe SW, Tong X, Udekwu KI, Ugalde JA, Valentine B, Vassilev DI, Vayndorf EM, Velavan TP, Wu J, Zambrano MM, Zhu J, Zhu S, Mason CE; International MetaSUB Consortium. A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell 2021;184:3376-3393.e17. [PMID: 34043940 DOI: 10.1016/j.cell.2021.05.002] [Cited by in Crossref: 4] [Cited by in F6Publishing: 7] [Article Influence: 4.0] [Reference Citation Analysis]
9 Leung MHY, Tong X, Bøifot KO, Bezdan D, Butler DJ, Danko DC, Gohli J, Green DC, Hernandez MT, Kelly FJ, Levy S, Mason-Buck G, Nieto-Caballero M, Syndercombe-Court D, Udekwu K, Young BG, Mason CE, Dybwad M, Lee PKH. Characterization of the public transit air microbiome and resistome reveals geographical specificity. Microbiome 2021;9:112. [PMID: 34039416 DOI: 10.1186/s40168-021-01044-7] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
10 Dong H, Tan R, Chen Z, Wang L, Song Y, Jin M, Yin J, Li H, Li J, Yang D. The Effects of Immunosuppression on the Lung Microbiome and Metabolites in Rats. Front Microbiol 2022;13:817159. [DOI: 10.3389/fmicb.2022.817159] [Reference Citation Analysis]
11 Ilyin V, Orlov O, Morozova Y, Skedina M, Vladimirov S, Plotnikov E, Artamonov A. Prognostic model for bacterial drug resistance genes horizontal spread in space-crews. Acta Astronautica 2022;190:388-94. [DOI: 10.1016/j.actaastro.2021.10.016] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
12 Macesic N, Blakeway LV, Stewart JD, Hawkey J, Wyres KL, Judd LM, Wick RR, Jenney AW, Holt KE, Peleg AY. Silent spread of mobile colistin resistance gene mcr-9.1 on IncHI2 'superplasmids' in clinical carbapenem-resistant Enterobacterales. Clin Microbiol Infect 2021:S1198-743X(21)00205-6. [PMID: 33915285 DOI: 10.1016/j.cmi.2021.04.020] [Reference Citation Analysis]
13 Zizovic I, Tyrka M, Matyja K, Moric I, Senerovic L, Trusek A. Functional Modification of Cellulose Acetate Microfiltration Membranes by Supercritical Solvent Impregnation. Molecules 2021;26:E411. [PMID: 33466808 DOI: 10.3390/molecules26020411] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
14 Zou HY, He LY, Gao FZ, Zhang M, Chen S, Wu DL, Liu YS, He LX, Bai H, Ying GG. Antibiotic resistance genes in surface water and groundwater from mining affected environments. Sci Total Environ 2021;772:145516. [PMID: 33571766 DOI: 10.1016/j.scitotenv.2021.145516] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 4.0] [Reference Citation Analysis]
15 Haak BW, Wiersinga WJ. Uncovering hidden antimicrobial resistance patterns within the hospital microbiome. Nat Med 2020;26:826-8. [PMID: 32514170 DOI: 10.1038/s41591-020-0919-z] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 0.5] [Reference Citation Analysis]
16 Rooney AM, Raphenya AR, Melano RG, Seah C, Yee NR, MacFadden DR, McArthur AG, Schneeberger PHH, Coburn B. Performance Characteristics of Next-Generation Sequencing for the Detection of Antimicrobial Resistance Determinants in Escherichia coli Genomes and Metagenomes. mSystems 2022;:e0002222. [PMID: 35642524 DOI: 10.1128/msystems.00022-22] [Reference Citation Analysis]
17 Ashokan A, Choo JM, Taylor SL, Lagana D, Shaw DR, Warner MS, Wesselingh SL, Rogers GB. Environmental dynamics of hospital microbiome upon transfer from a major hospital to a new facility. J Infect 2021:S0163-4453(21)00490-4. [PMID: 34606783 DOI: 10.1016/j.jinf.2021.09.020] [Reference Citation Analysis]
18 de Albuquerque GE, Moda BS, Serpa MS, Branco GP, Defelicibus A, Takenaka IKTM, de Amorim MG, Miola EC, Martins VCA, Torres KL, Bezerra SM, Claro LCL, Pelosof AG, Sztokfisz CZ, Abrantes LLS, Coimbra FJF, Kowalski LP, Alves FA, Zequi SC, Udekwu KI, Silva IT, Nunes DN, Bartelli TF, Dias-neto E. Evaluation of Bacteria and Fungi DNA Abundance in Human Tissues. Genes 2022;13:237. [DOI: 10.3390/genes13020237] [Reference Citation Analysis]
19 Chen L, Zhao N, Cao J, Liu X, Xu J, Ma Y, Yu Y, Zhang X, Zhang W, Guan X, Yu X, Liu Z, Fan Y, Wang Y, Liang F, Wang D, Zhao L, Song M, Wang J. Short- and long-read metagenomics expand individualized structural variations in gut microbiomes. Nat Commun 2022;13. [DOI: 10.1038/s41467-022-30857-9] [Reference Citation Analysis]
20 Hua X, Liang Q, Deng M, He J, Wang M, Hong W, Wu J, Lu B, Leptihn S, Yu Y, Chen H. BacAnt: A Combination Annotation Server for Bacterial DNA Sequences to Identify Antibiotic Resistance Genes, Integrons, and Transposable Elements. Front Microbiol 2021;12:649969. [PMID: 34367079 DOI: 10.3389/fmicb.2021.649969] [Reference Citation Analysis]
21 Chen J, Hao D, Mei K, Li X, Li T, Ma C, Xi X, Li L, Wang L, Zhou M, Chen T, Liu J, Wu Q. In Vitro and In Vivo Studies on the Antibacterial Activity and Safety of a New Antimicrobial Peptide Dermaseptin-AC. Microbiol Spectr 2021;9:e0131821. [PMID: 34908502 DOI: 10.1128/Spectrum.01318-21] [Reference Citation Analysis]
22 Zhao R, Yu K, Zhang J, Zhang G, Huang J, Ma L, Deng C, Li X, Li B. Deciphering the mobility and bacterial hosts of antibiotic resistance genes under antibiotic selection pressure by metagenomic assembly and binning approaches. Water Res 2020;186:116318. [PMID: 32871290 DOI: 10.1016/j.watres.2020.116318] [Cited by in Crossref: 16] [Cited by in F6Publishing: 10] [Article Influence: 8.0] [Reference Citation Analysis]
23 Jo JH, Harkins CP, Schwardt NH, Portillo JA, Zimmerman MD, Carter CL, Hossen MA, Peer CJ, Polley EC, Dartois V, Figg WD, Moutsopoulos NM, Segre JA, Kong HH; NISC Comparative Sequencing Program. Alterations of human skin microbiome and expansion of antimicrobial resistance after systemic antibiotics. Sci Transl Med 2021;13:eabd8077. [PMID: 34936382 DOI: 10.1126/scitranslmed.abd8077] [Reference Citation Analysis]
24 Salamzade R, Manson AL, Walker BJ, Brennan-Krohn T, Worby CJ, Ma P, He LL, Shea TP, Qu J, Chapman SB, Howe W, Young SK, Wurster JI, Delaney ML, Kanjilal S, Onderdonk AB, Bittencourt CE, Gussin GM, Kim D, Peterson EM, Ferraro MJ, Hooper DC, Shenoy ES, Cuomo CA, Cosimi LA, Huang SS, Kirby JE, Pierce VM, Bhattacharyya RP, Earl AM. Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance. Genome Med 2022;14:37. [PMID: 35379360 DOI: 10.1186/s13073-022-01040-y] [Reference Citation Analysis]
25 Perlaza-Jiménez L, Wu Q, Torres VVL, Zhang X, Li J, Rocker A, Lithgow T, Zhou T, Vijaykrishna D. Forensic genomics of a novel Klebsiella quasipneumoniae type from a neonatal intensive care unit in China reveals patterns of colonization, evolution and epidemiology. Microb Genom 2020;6. [PMID: 32931409 DOI: 10.1099/mgen.0.000433] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
26 Podlesny D, Arze C, Dörner E, Verma S, Dutta S, Walter J, Fricke WF. Metagenomic strain detection with SameStr: identification of a persisting core gut microbiota transferable by fecal transplantation. Microbiome 2022;10:53. [PMID: 35337386 DOI: 10.1186/s40168-022-01251-w] [Reference Citation Analysis]
27 Klassert TE, Leistner R, Zubiria-Barrera C, Stock M, López M, Neubert R, Driesch D, Gastmeier P, Slevogt H. Bacterial colonization dynamics and antibiotic resistance gene dissemination in the hospital environment after first patient occupancy: a longitudinal metagenetic study. Microbiome 2021;9:169. [PMID: 34380550 DOI: 10.1186/s40168-021-01109-7] [Reference Citation Analysis]
28 Avershina E, Shapovalova V, Shipulin G. Fighting Antibiotic Resistance in Hospital-Acquired Infections: Current State and Emerging Technologies in Disease Prevention, Diagnostics and Therapy. Front Microbiol 2021;12:707330. [PMID: 34367112 DOI: 10.3389/fmicb.2021.707330] [Cited by in F6Publishing: 3] [Reference Citation Analysis]
29 Li C, Av-Shalom TV, Tan JWG, Kwah JS, Chng KR, Nagarajan N. BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data. PLoS Comput Biol 2021;17:e1009343. [PMID: 34495960 DOI: 10.1371/journal.pcbi.1009343] [Reference Citation Analysis]
30 Allen AR, Ford T, Skuce RA. Does Mycobacterium tuberculosis var. bovis Survival in the Environment Confound Bovine Tuberculosis Control and Eradication? A Literature Review. Vet Med Int 2021;2021:8812898. [PMID: 33628412 DOI: 10.1155/2021/8812898] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
31 D'Angeli F, Malfa GA, Garozzo A, Li Volti G, Genovese C, Stivala A, Nicolosi D, Attanasio F, Bellia F, Ronsisvalle S, Acquaviva R. Antimicrobial, Antioxidant, and Cytotoxic Activities of Juglans regia L. Pellicle Extract. Antibiotics (Basel) 2021;10:159. [PMID: 33557378 DOI: 10.3390/antibiotics10020159] [Reference Citation Analysis]
32 McCall LI. Quo vadis? Central Rules of Pathogen and Disease Tropism. Front Cell Infect Microbiol 2021;11:640987. [PMID: 33718287 DOI: 10.3389/fcimb.2021.640987] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
33 Ko KKK, Chng KR, Nagarajan N. Metagenomics-enabled microbial surveillance. Nat Microbiol 2022;7:486-96. [PMID: 35365786 DOI: 10.1038/s41564-022-01089-w] [Reference Citation Analysis]
34 León-Sampedro R, DelaFuente J, Díaz-Agero C, Crellen T, Musicha P, Rodríguez-Beltrán J, de la Vega C, Hernández-García M, López-Fresneña N, Ruiz-Garbajosa P, Cantón R, Cooper BS, San Millán Á; R-GNOSIS WP5 Study Group. Pervasive transmission of a carbapenem resistance plasmid in the gut microbiota of hospitalized patients. Nat Microbiol 2021;6:606-16. [PMID: 33782584 DOI: 10.1038/s41564-021-00879-y] [Cited by in Crossref: 8] [Cited by in F6Publishing: 4] [Article Influence: 8.0] [Reference Citation Analysis]
35 Afshinnekoo E, Bhattacharya C, Burguete-García A, Castro-Nallar E, Deng Y, Desnues C, Dias-Neto E, Elhaik E, Iraola G, Jang S, Łabaj PP, Mason CE, Nagarajan N, Poulsen M, Prithiviraj B, Siam R, Shi T, Suzuki H, Werner J, Zambrano MM, Bhattacharyya M; MetaSUB Consortium. COVID-19 drug practices risk antimicrobial resistance evolution. Lancet Microbe 2021;2:e135-6. [PMID: 33655229 DOI: 10.1016/S2666-5247(21)00039-2] [Cited by in Crossref: 5] [Cited by in F6Publishing: 3] [Article Influence: 5.0] [Reference Citation Analysis]
36 Ciuffreda L, Rodríguez-Pérez H, Flores C. Nanopore sequencing and its application to the study of microbial communities. Comput Struct Biotechnol J 2021;19:1497-511. [PMID: 33815688 DOI: 10.1016/j.csbj.2021.02.020] [Cited by in Crossref: 3] [Cited by in F6Publishing: 5] [Article Influence: 3.0] [Reference Citation Analysis]
37 Zhang AN, Gaston JM, Dai CL, Zhao S, Poyet M, Groussin M, Yin X, Li LG, van Loosdrecht MCM, Topp E, Gillings MR, Hanage WP, Tiedje JM, Moniz K, Alm EJ, Zhang T. An omics-based framework for assessing the health risk of antimicrobial resistance genes. Nat Commun 2021;12:4765. [PMID: 34362925 DOI: 10.1038/s41467-021-25096-3] [Cited by in F6Publishing: 2] [Reference Citation Analysis]
38 Cheng J, Tu W, Ang EH, Aizudin M, Yang F, Zhou X, Yu D, Li F, Guo Z, Song Y. Achieving reinforced broad-spectrum and sustained antimicrobial efficacy by nickel-doping AlOOH nanoflower accommodated with uniform silver nanospecies. Colloids and Surfaces A: Physicochemical and Engineering Aspects 2022;641:128488. [DOI: 10.1016/j.colsurfa.2022.128488] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
39 Ashokan A, Hanson J, Aung NM, Kyi MM, Taylor SL, Choo JM, Flynn E, Mobegi F, Warner MS, Wesselingh SL, Boyd MA, Rogers GB. Investigating potential transmission of antimicrobial resistance in an open-plan hospital ward: a cross-sectional metagenomic study of resistome dispersion in a lower middle-income setting. Antimicrob Resist Infect Control 2021;10:56. [PMID: 33736699 DOI: 10.1186/s13756-021-00915-w] [Reference Citation Analysis]
40 Cui CY, He Q, Jia QL, Li C, Chen C, Wu XT, Zhang XJ, Lin ZY, Zheng ZJ, Liao XP, Kreiswirth BN, Liu YH, Chen L, Sun J. Evolutionary Trajectory of the Tet(X) Family: Critical Residue Changes towards High-Level Tigecycline Resistance. mSystems 2021;6:e00050-21. [PMID: 34006624 DOI: 10.1128/mSystems.00050-21] [Cited by in F6Publishing: 2] [Reference Citation Analysis]
41 Zafer MM, Hussein AFA, Al-Agamy MH, Radwan HH, Hamed SM. Genomic Characterization of Extensively Drug-Resistant NDM-Producing Acinetobacter baumannii Clinical Isolates With the Emergence of Novel bla ADC-257. Front Microbiol 2021;12:736982. [PMID: 34880837 DOI: 10.3389/fmicb.2021.736982] [Reference Citation Analysis]