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For: Porras P, Barrera E, Bridge A, Del-Toro N, Cesareni G, Duesbury M, Hermjakob H, Iannuccelli M, Jurisica I, Kotlyar M, Licata L, Lovering RC, Lynn DJ, Meldal B, Nanduri B, Paneerselvam K, Panni S, Pastrello C, Pellegrini M, Perfetto L, Rahimzadeh N, Ratan P, Ricard-Blum S, Salwinski L, Shirodkar G, Shrivastava A, Orchard S. Towards a unified open access dataset of molecular interactions. Nat Commun 2020;11:6144. [PMID: 33262342 DOI: 10.1038/s41467-020-19942-z] [Cited by in Crossref: 10] [Cited by in F6Publishing: 11] [Article Influence: 5.0] [Reference Citation Analysis]
Number Citing Articles
1 Vallet SD, Berthollier C, Ricard-Blum S. The glycosaminoglycan interactome 2.0. Am J Physiol Cell Physiol 2022. [PMID: 35544698 DOI: 10.1152/ajpcell.00095.2022] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
2 Ali SA, Pastrello C, Kaur N, Peffers MJ, Ormseth MJ, Jurisica I. A Network Biology Approach to Understanding the Tissue-Specific Roles of Non-Coding RNAs in Arthritis. Front Endocrinol (Lausanne) 2021;12:744747. [PMID: 34803912 DOI: 10.3389/fendo.2021.744747] [Reference Citation Analysis]
3 Ragueneau E, Shrivastava A, Morris JH, Del-Toro N, Hermjakob H, Porras P. IntAct App: a Cytoscape application for molecular interaction network visualisation and analysis. Bioinformatics 2021:btab319. [PMID: 33961020 DOI: 10.1093/bioinformatics/btab319] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
4 Meldal BHM, Perfetto L, Combe C, Lubiana T, Ferreira Cavalcante JV, Bye-A-Jee H, Waagmeester A, Del-Toro N, Shrivastava A, Barrera E, Wong E, Mlecnik B, Bindea G, Panneerselvam K, Willighagen E, Rappsilber J, Porras P, Hermjakob H, Orchard S. Complex Portal 2022: new curation frontiers. Nucleic Acids Res 2021:gkab991. [PMID: 34718729 DOI: 10.1093/nar/gkab991] [Reference Citation Analysis]
5 Saha D, Iannuccelli M, Brun C, Zanzoni A, Licata L. The Intricacy of the Viral-Human Protein Interaction Networks: Resources, Data, and Analyses. Front Microbiol 2022;13:849781. [DOI: 10.3389/fmicb.2022.849781] [Reference Citation Analysis]
6 Cesareni G, Sacco F, Perfetto L. Assembling Disease Networks From Causal Interaction Resources. Front Genet 2021;12:694468. [PMID: 34178043 DOI: 10.3389/fgene.2021.694468] [Reference Citation Analysis]
7 Arici MK, Tuncbag N. Performance Assessment of the Network Reconstruction Approaches on Various Interactomes. Front Mol Biosci 2021;8:666705. [PMID: 34676243 DOI: 10.3389/fmolb.2021.666705] [Reference Citation Analysis]
8 Vallet SD, Berthollier C, Salza R, Muller L, Ricard-Blum S. The Interactome of Cancer-Related Lysyl Oxidase and Lysyl Oxidase-Like Proteins. Cancers (Basel) 2020;13:E71. [PMID: 33383846 DOI: 10.3390/cancers13010071] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
9 Berthollier C, Vallet SD, Deniaud M, Clerc O, Ricard-Blum S. Building Protein-Protein and Protein-Glycosaminoglycan Interaction Networks Using MatrixDB, the Extracellular Matrix Interaction Database. Curr Protoc 2021;1:e47. [PMID: 33794052 DOI: 10.1002/cpz1.47] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
10 Alborzi SZ, Ahmed Nacer A, Najjar H, Ritchie DW, Devignes MD. PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions. PLoS Comput Biol 2021;17:e1008844. [PMID: 34370723 DOI: 10.1371/journal.pcbi.1008844] [Reference Citation Analysis]
11 Oyagawa CRM, Grimsey NL. Cannabinoid receptor CB1 and CB2 interacting proteins: Techniques, progress and perspectives. Methods Cell Biol 2021;166:83-132. [PMID: 34752341 DOI: 10.1016/bs.mcb.2021.06.011] [Reference Citation Analysis]
12 Lim SH, Snider J, Birimberg‐schwartz L, Ip W, Serralha JC, Botelho HM, Lopes‐pacheco M, Pinto MC, Moutaoufik MT, Zilocchi M, Laselva O, Esmaeili M, Kotlyar M, Lyakisheva A, Tang P, López Vázquez L, Akula I, Aboualizadeh F, Wong V, Grozavu I, Opacak‐bernardi T, Yao Z, Mendoza M, Babu M, Jurisica I, Gonska T, Bear CE, Amaral MD, Stagljar I. CFTR interactome mapping using the mammalian membrane two‐hybrid high‐throughput screening system. Molecular Systems Biology 2022;18. [DOI: 10.15252/msb.202110629] [Reference Citation Analysis]
13 Ricard-blum S, Perez S. Glycosaminoglycan interaction networks and databases. Current Opinion in Structural Biology 2022;74:102355. [DOI: 10.1016/j.sbi.2022.102355] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
14 Kunowska N, Stelzl U. Decoding the cellular effects of genetic variation through interaction proteomics. Curr Opin Chem Biol 2021;66:102100. [PMID: 34801969 DOI: 10.1016/j.cbpa.2021.102100] [Reference Citation Analysis]
15 Kuiper M, Bonello J, Fernández-Breis JT, Bucher P, Futschik ME, Gaudet P, Kulakovskiy IV, Licata L, Logie C, Lovering RC, Makeev VJ, Orchard S, Panni S, Perfetto L, Sant D, Schulz S, Zerbino DR, Lægreid A; GRECO Consortium. The Gene Regulation Knowledge Commons: The action area of GREEKC. Biochim Biophys Acta Gene Regul Mech 2021;:194768. [PMID: 34757206 DOI: 10.1016/j.bbagrm.2021.194768] [Reference Citation Analysis]
16 Feuermann M, Boutet E, Morgat A, Axelsen KB, Bansal P, Bolleman J, de Castro E, Coudert E, Gasteiger E, Géhant S, Lieberherr D, Lombardot T, Neto TB, Pedruzzi I, Poux S, Pozzato M, Redaschi N, Bridge A, On Behalf Of The UniProt Consortium. Diverse Taxonomies for Diverse Chemistries: Enhanced Representation of Natural Product Metabolism in UniProtKB. Metabolites 2021;11:48. [PMID: 33445429 DOI: 10.3390/metabo11010048] [Cited by in F6Publishing: 2] [Reference Citation Analysis]
17 Hollander M, Do T, Will T, Helms V. Detecting Rewiring Events in Protein-Protein Interaction Networks Based on Transcriptomic Data. Front Bioinform 2021;1:724297. [DOI: 10.3389/fbinf.2021.724297] [Reference Citation Analysis]
18 Holzinger A, Dehmer M, Emmert-streib F, Cucchiara R, Augenstein I, Ser JD, Samek W, Jurisica I, Díaz-rodríguez N. Information fusion as an integrative cross-cutting enabler to achieve robust, explainable, and trustworthy medical artificial intelligence. Information Fusion 2022;79:263-78. [DOI: 10.1016/j.inffus.2021.10.007] [Cited by in Crossref: 9] [Cited by in F6Publishing: 6] [Article Influence: 9.0] [Reference Citation Analysis]
19 Xie VC, Styles MJ, Dickinson BC. Methods for the directed evolution of biomolecular interactions. Trends Biochem Sci 2022;47:403-16. [PMID: 35427479 DOI: 10.1016/j.tibs.2022.01.001] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
20 Del Toro N, Shrivastava A, Ragueneau E, Meldal B, Combe C, Barrera E, Perfetto L, How K, Ratan P, Shirodkar G, Lu O, Mészáros B, Watkins X, Pundir S, Licata L, Iannuccelli M, Pellegrini M, Martin MJ, Panni S, Duesbury M, Vallet SD, Rappsilber J, Ricard-Blum S, Cesareni G, Salwinski L, Orchard S, Porras P, Panneerselvam K, Hermjakob H. The IntAct database: efficient access to fine-grained molecular interaction data. Nucleic Acids Res 2021:gkab1006. [PMID: 34761267 DOI: 10.1093/nar/gkab1006] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
21 Kotlyar M, Pastrello C, Ahmed Z, Chee J, Varyova Z, Jurisica I. IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis. Nucleic Acids Res 2021:gkab1034. [PMID: 34755877 DOI: 10.1093/nar/gkab1034] [Reference Citation Analysis]