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For: Moya A, Ferrer M. Functional Redundancy-Induced Stability of Gut Microbiota Subjected to Disturbance. Trends Microbiol 2016;24:402-13. [PMID: 26996765 DOI: 10.1016/j.tim.2016.02.002] [Cited by in Crossref: 219] [Cited by in F6Publishing: 195] [Article Influence: 36.5] [Reference Citation Analysis]
Number Citing Articles
1 Džunková M, Martinez-Martinez D, Gardlík R, Behuliak M, Janšáková K, Jiménez N, Vázquez-Castellanos JF, Martí JM, D'Auria G, Bandara HMHN, Latorre A, Celec P, Moya A. Oxidative stress in the oral cavity is driven by individual-specific bacterial communities. NPJ Biofilms Microbiomes 2018;4:29. [PMID: 30510769 DOI: 10.1038/s41522-018-0072-3] [Cited by in Crossref: 12] [Cited by in F6Publishing: 12] [Article Influence: 3.0] [Reference Citation Analysis]
2 Sainz T, Gosalbes MJ, Talavera-Rodríguez A, Jimenez-Hernandez N, Prieto L, Escosa L, Guillén S, Ramos JT, Muñoz-Fernández MÁ, Moya A, Navarro ML, Mellado MJ, Serrano-Villar S. Effect of a Nutritional Intervention on the Intestinal Microbiota of Vertically HIV-Infected Children: The Pediabiota Study. Nutrients 2020;12:E2112. [PMID: 32708743 DOI: 10.3390/nu12072112] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
3 Hotchkiss MZ, Poulain AJ, Forrest JRK. Pesticide-induced disturbances of bee gut microbiotas. FEMS Microbiol Rev 2022:fuab056. [PMID: 35107129 DOI: 10.1093/femsre/fuab056] [Reference Citation Analysis]
4 Wu Y, Zheng Y, Wang S, Chen Y, Tao J, Chen Y, Chen G, Zhao H, Wang K, Dong K, Hu F, Feng Y, Zheng H. Genetic divergence and functional convergence of gut bacteria between the Eastern honey bee Apis cerana and the Western honey bee Apis mellifera. Journal of Advanced Research 2021. [DOI: 10.1016/j.jare.2021.08.002] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
5 Cerdó T, Ruiz A, Acuña I, Jáuregui R, Jehmlich N, Haange SB, von Bergen M, Suárez A, Campoy C. Gut microbial functional maturation and succession during human early life. Environ Microbiol 2018;20:2160-77. [PMID: 29687552 DOI: 10.1111/1462-2920.14235] [Cited by in Crossref: 17] [Cited by in F6Publishing: 16] [Article Influence: 4.3] [Reference Citation Analysis]
6 Li L, Figeys D. Proteomics and Metaproteomics Add Functional, Taxonomic and Biomass Dimensions to Modeling the Ecosystem at the Mucosal-luminal Interface. Mol Cell Proteomics 2020;19:1409-17. [PMID: 32581040 DOI: 10.1074/mcp.R120.002051] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
7 Li L, Abou-Samra E, Ning Z, Zhang X, Mayne J, Wang J, Cheng K, Walker K, Stintzi A, Figeys D. An in vitro model maintaining taxon-specific functional activities of the gut microbiome. Nat Commun 2019;10:4146. [PMID: 31515476 DOI: 10.1038/s41467-019-12087-8] [Cited by in Crossref: 27] [Cited by in F6Publishing: 21] [Article Influence: 9.0] [Reference Citation Analysis]
8 Kreisinger J, Kropáčková L, Petrželková A, Adámková M, Tomášek O, Martin JF, Michálková R, Albrecht T. Temporal Stability and the Effect of Transgenerational Transfer on Fecal Microbiota Structure in a Long Distance Migratory Bird. Front Microbiol 2017;8:50. [PMID: 28220109 DOI: 10.3389/fmicb.2017.00050] [Cited by in Crossref: 37] [Cited by in F6Publishing: 33] [Article Influence: 7.4] [Reference Citation Analysis]
9 Raimondi S, Calvini R, Candeliere F, Leonardi A, Ulrici A, Rossi M, Amaretti A. Multivariate Analysis in Microbiome Description: Correlation of Human Gut Protein Degraders, Metabolites, and Predicted Metabolic Functions. Front Microbiol 2021;12:723479. [PMID: 34603248 DOI: 10.3389/fmicb.2021.723479] [Reference Citation Analysis]
10 Serrano-Villar S, Rojo D, Martínez-Martínez M, Deusch S, Vázquez-Castellanos JF, Bargiela R, Sainz T, Vera M, Moreno S, Estrada V, Gosalbes MJ, Latorre A, Seifert J, Barbas C, Moya A, Ferrer M. Gut Bacteria Metabolism Impacts Immune Recovery in HIV-infected Individuals. EBioMedicine 2016;8:203-16. [PMID: 27428431 DOI: 10.1016/j.ebiom.2016.04.033] [Cited by in Crossref: 56] [Cited by in F6Publishing: 51] [Article Influence: 9.3] [Reference Citation Analysis]
11 Vänni P, Tejesvi MV, Ainonen S, Renko M, Korpela K, Salo J, Paalanne N, Tapiainen T. Delivery mode and perinatal antibiotics influence the predicted metabolic pathways of the gut microbiome. Sci Rep 2021;11:17483. [PMID: 34471207 DOI: 10.1038/s41598-021-97007-x] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
12 Deng Y, Borewicz K, van Loo J, Olabarrieta MZ, Kokou F, Sipkema D, Verdegem MCJ. In-Situ Biofloc Affects the Core Prokaryotes Community Composition in Gut and Enhances Growth of Nile Tilapia (Oreochromis niloticus). Microb Ecol 2021. [PMID: 34609532 DOI: 10.1007/s00248-021-01880-y] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
13 Calvani R, Picca A, Lo Monaco MR, Landi F, Bernabei R, Marzetti E. Of Microbes and Minds: A Narrative Review on the Second Brain Aging. Front Med (Lausanne) 2018;5:53. [PMID: 29552561 DOI: 10.3389/fmed.2018.00053] [Cited by in Crossref: 32] [Cited by in F6Publishing: 26] [Article Influence: 8.0] [Reference Citation Analysis]
14 Maki KA, Burke LA, Calik MW, Watanabe-Chailland M, Sweeney D, Romick-Rosendale LE, Green SJ, Fink AM. Sleep fragmentation increases blood pressure and is associated with alterations in the gut microbiome and fecal metabolome in rats. Physiol Genomics 2020;52:280-92. [PMID: 32567509 DOI: 10.1152/physiolgenomics.00039.2020] [Cited by in Crossref: 10] [Cited by in F6Publishing: 9] [Article Influence: 5.0] [Reference Citation Analysis]
15 Pita L, Rix L, Slaby BM, Franke A, Hentschel U. The sponge holobiont in a changing ocean: from microbes to ecosystems. Microbiome 2018;6:46. [PMID: 29523192 DOI: 10.1186/s40168-018-0428-1] [Cited by in Crossref: 184] [Cited by in F6Publishing: 128] [Article Influence: 46.0] [Reference Citation Analysis]
16 Xiao Y, Xiao G, Liu H, Zhao X, Sun C, Tan X, Sun K, Liu S, Feng J. Captivity causes taxonomic and functional convergence of gut microbial communities in bats. PeerJ 2019;7:e6844. [PMID: 31106061 DOI: 10.7717/peerj.6844] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 2.7] [Reference Citation Analysis]
17 Ramírez-Carrillo E, Gaona O, Nieto J, Sánchez-Quinto A, Cerqueda-García D, Falcón LI, Rojas-Ramos OA, González-Santoyo I. Disturbance in human gut microbiota networks by parasites and its implications in the incidence of depression. Sci Rep 2020;10:3680. [PMID: 32111922 DOI: 10.1038/s41598-020-60562-w] [Cited by in Crossref: 6] [Cited by in F6Publishing: 4] [Article Influence: 3.0] [Reference Citation Analysis]
18 Martí JM, Martínez-Martínez D, Rubio T, Gracia C, Peña M, Latorre A, Moya A, P Garay C. Health and Disease Imprinted in the Time Variability of the Human Microbiome. mSystems 2017;2:e00144-16. [PMID: 28345059 DOI: 10.1128/mSystems.00144-16] [Cited by in Crossref: 26] [Cited by in F6Publishing: 21] [Article Influence: 5.2] [Reference Citation Analysis]
19 McCauley M, Chiarello M, Atkinson CL, Jackson CR. Gut Microbiomes of Freshwater Mussels (Unionidae) Are Taxonomically and Phylogenetically Variable across Years but Remain Functionally Stable. Microorganisms 2021;9:411. [PMID: 33669471 DOI: 10.3390/microorganisms9020411] [Reference Citation Analysis]
20 Yu D, Yang Y, Long J, Xu W, Cai Q, Wu J, Cai H, Zheng W, Shu XO. Long-term Diet Quality and Gut Microbiome Functionality: A Prospective, Shotgun Metagenomic Study among Urban Chinese Adults. Curr Dev Nutr 2021;5:nzab026. [PMID: 33937616 DOI: 10.1093/cdn/nzab026] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
21 [DOI: 10.1101/176313] [Cited by in Crossref: 8] [Cited by in F6Publishing: 2] [Reference Citation Analysis]
22 Bello-Gil D, Audebert C, Olivera-Ardid S, Pérez-Cruz M, Even G, Khasbiullina N, Gantois N, Shilova N, Merlin S, Costa C, Bovin N, Mañez R. The Formation of Glycan-Specific Natural Antibodies Repertoire in GalT-KO Mice Is Determined by Gut Microbiota. Front Immunol 2019;10:342. [PMID: 30891034 DOI: 10.3389/fimmu.2019.00342] [Cited by in Crossref: 15] [Cited by in F6Publishing: 13] [Article Influence: 5.0] [Reference Citation Analysis]
23 Qin Y, Havulinna AS, Liu Y, Jousilahti P, Ritchie SC, Tokolyi A, Sanders JG, Valsta L, Brożyńska M, Zhu Q, Tripathi A, Vázquez-Baeza Y, Loomba R, Cheng S, Jain M, Niiranen T, Lahti L, Knight R, Salomaa V, Inouye M, Méric G. Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort. Nat Genet 2022. [PMID: 35115689 DOI: 10.1038/s41588-021-00991-z] [Reference Citation Analysis]
24 Toe LC, Kerckhof FM, De Bodt J, Morel FB, Ouedraogo JB, Kolsteren P, Van de Wiele T. A prebiotic-enhanced lipid-based nutrient supplement (LNSp) increases Bifidobacterium relative abundance and enhances short-chain fatty acid production in simulated colonic microbiota from undernourished infants. FEMS Microbiol Ecol 2020;96:fiaa105. [PMID: 32568403 DOI: 10.1093/femsec/fiaa105] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
25 Sharma R. Emerging Interrelationship Between the Gut Microbiome and Cellular Senescence in the Context of Aging and Disease: Perspectives and Therapeutic Opportunities. Probiotics Antimicrob Proteins 2022. [PMID: 34985682 DOI: 10.1007/s12602-021-09903-3] [Reference Citation Analysis]
26 Sutherland VL, McQueen CA, Mendrick D, Gulezian D, Cerniglia C, Foley S, Forry S, Khare S, Liang X, Manautou JE, Tweedie D, Young H, Alekseyenko AV, Burns F, Dietert R, Wilson A, Chen C. The Gut Microbiome and Xenobiotics: Identifying Knowledge Gaps. Toxicol Sci 2020;176:1-10. [PMID: 32658296 DOI: 10.1093/toxsci/kfaa060] [Cited by in Crossref: 6] [Cited by in F6Publishing: 4] [Article Influence: 6.0] [Reference Citation Analysis]
27 Harris EV, de Roode JC, Gerardo NM. Diet-microbiome-disease: Investigating diet's influence on infectious disease resistance through alteration of the gut microbiome. PLoS Pathog 2019;15:e1007891. [PMID: 31671152 DOI: 10.1371/journal.ppat.1007891] [Cited by in Crossref: 18] [Cited by in F6Publishing: 14] [Article Influence: 6.0] [Reference Citation Analysis]
28 Duperron S, Halary S, Gallet A, Marie B. Microbiome-Aware Ecotoxicology of Organisms: Relevance, Pitfalls, and Challenges. Front Public Health 2020;8:407. [PMID: 32974256 DOI: 10.3389/fpubh.2020.00407] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 3.0] [Reference Citation Analysis]
29 Thursby E, Juge N. Introduction to the human gut microbiota. Biochem J. 2017;474:1823-1836. [PMID: 28512250 DOI: 10.1042/bcj20160510] [Cited by in Crossref: 714] [Cited by in F6Publishing: 401] [Article Influence: 142.8] [Reference Citation Analysis]
30 Douglas AE. The microbial exometabolome: ecological resource and architect of microbial communities. Philos Trans R Soc Lond B Biol Sci 2020;375:20190250. [PMID: 32200747 DOI: 10.1098/rstb.2019.0250] [Cited by in Crossref: 14] [Cited by in F6Publishing: 10] [Article Influence: 7.0] [Reference Citation Analysis]
31 Navada S, Vadstein O. Salinity Acclimation Strategies in Nitrifying Bioreactors. Front Mar Sci 2022;9:867592. [DOI: 10.3389/fmars.2022.867592] [Reference Citation Analysis]
32 Heintz-buschart A, Wilmes P. Human Gut Microbiome: Function Matters. Trends in Microbiology 2018;26:563-74. [DOI: 10.1016/j.tim.2017.11.002] [Cited by in Crossref: 185] [Cited by in F6Publishing: 155] [Article Influence: 46.3] [Reference Citation Analysis]
33 Fontaine SS, Kohl KD. Optimal integration between host physiology and functions of the gut microbiome. Philos Trans R Soc Lond B Biol Sci 2020;375:20190594. [PMID: 32772673 DOI: 10.1098/rstb.2019.0594] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 2.0] [Reference Citation Analysis]
34 Tanprasertsuk J, Shmalberg J, Maughan H, Tate DE, Perry LM, Jha AR, Honaker RW. Heterogeneity of gut microbial responses in healthy household dogs transitioning from an extruded to a mildly cooked diet. PeerJ 2021;9:e11648. [PMID: 34249503 DOI: 10.7717/peerj.11648] [Reference Citation Analysis]
35 Ng SH, Stat M, Bunce M, Simmons LW. The influence of diet and environment on the gut microbial community of field crickets. Ecol Evol 2018;8:4704-20. [PMID: 29760910 DOI: 10.1002/ece3.3977] [Cited by in Crossref: 22] [Cited by in F6Publishing: 18] [Article Influence: 5.5] [Reference Citation Analysis]
36 Hernandez CJ. Bone Mechanical Function and the Gut Microbiota. In: Mccabe LR, Parameswaran N, editors. Understanding the Gut-Bone Signaling Axis. Cham: Springer International Publishing; 2017. pp. 249-70. [DOI: 10.1007/978-3-319-66653-2_12] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 1.4] [Reference Citation Analysis]
37 Pacheco-Sandoval A, Schramm Y, Heckel G, Brassea-Pérez E, Martínez-Porchas M, Lago-Lestón A. The Pacific harbor seal gut microbiota in Mexico: Its relationship with diet and functional inferences. PLoS One 2019;14:e0221770. [PMID: 31465508 DOI: 10.1371/journal.pone.0221770] [Cited by in Crossref: 7] [Cited by in F6Publishing: 5] [Article Influence: 2.3] [Reference Citation Analysis]
38 Yao R, Yang Z, Zhang Z, Hu T, Chen H, Huang F, Gu X, Yang X, Lu G, Zhu L. Are the gut microbial systems of giant pandas unstable? Heliyon 2019;5:e02480. [PMID: 31687574 DOI: 10.1016/j.heliyon.2019.e02480] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 2.0] [Reference Citation Analysis]
39 Yang B, Cui Z, Ning M, Chen Y, Wu Z, Huang H. Variation in the intestinal microbiota at different developmental stages of Hynobius maoershanensis. Ecology and Evolution 2022;12. [DOI: 10.1002/ece3.8712] [Reference Citation Analysis]
40 Jeong JY, Kim TB, Kim J, Choi HW, Kim EJ, Yoo HJ, Lee S, Jun HR, Yoo W, Kim S, Kim SC, Jun E. Diversity in the Extracellular Vesicle-Derived Microbiome of Tissues According to Tumor Progression in Pancreatic Cancer. Cancers (Basel) 2020;12:E2346. [PMID: 32825137 DOI: 10.3390/cancers12092346] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
41 Callegari M, Crotti E, Fusi M, Marasco R, Gonella E, De Noni I, Romano D, Borin S, Tsiamis G, Cherif A, Alma A, Daffonchio D. Compartmentalization of bacterial and fungal microbiomes in the gut of adult honeybees. NPJ Biofilms Microbiomes 2021;7:42. [PMID: 33963194 DOI: 10.1038/s41522-021-00212-9] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
42 Bornbusch SL, Harris RL, Grebe NM, Roche K, Dimac-Stohl K, Drea CM. Antibiotics and fecal transfaunation differentially affect microbiota recovery, associations, and antibiotic resistance in lemur guts. Anim Microbiome 2021;3:65. [PMID: 34598739 DOI: 10.1186/s42523-021-00126-z] [Reference Citation Analysis]
43 Bredon M, Depuydt E, Brisson L, Moulin L, Charles C, Haenn S, Moumen B, Bouchon D. Effects of Dysbiosis and Dietary Manipulation on the Digestive Microbiota of a Detritivorous Arthropod. Microorganisms 2021;9:148. [PMID: 33440837 DOI: 10.3390/microorganisms9010148] [Reference Citation Analysis]
44 Pérez MV, Guerrero LD, Orellana E, Figuerola EL, Erijman L. Time Series Genome-Centric Analysis Unveils Bacterial Response to Operational Disturbance in Activated Sludge. mSystems 2019;4:e00169-19. [PMID: 31266798 DOI: 10.1128/mSystems.00169-19] [Cited by in Crossref: 13] [Cited by in F6Publishing: 3] [Article Influence: 4.3] [Reference Citation Analysis]
45 Jiménez-Avalos JA, Arrevillaga-Boni G, González-López L, García-Carvajal ZY, González-Avila M. Classical methods and perspectives for manipulating the human gut microbial ecosystem. Crit Rev Food Sci Nutr 2021;61:234-58. [PMID: 32114770 DOI: 10.1080/10408398.2020.1724075] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 2.5] [Reference Citation Analysis]
46 Tong Q, Cui LY, Du XP, Hu ZF, Bie J, Xiao JH, Wang HB, Zhang JT. Comparison of Gut Microbiota Diversity and Predicted Functions Between Healthy and Diseased Captive Rana dybowskii. Front Microbiol 2020;11:2096. [PMID: 32983063 DOI: 10.3389/fmicb.2020.02096] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 2.0] [Reference Citation Analysis]
47 Hermans SM, Taylor M, Grelet G, Curran-Cournane F, Buckley HL, Handley KM, Lear G. From pine to pasture: land use history has long-term impacts on soil bacterial community composition and functional potential. FEMS Microbiol Ecol 2020;96:fiaa041. [PMID: 32175557 DOI: 10.1093/femsec/fiaa041] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
48 O'Connell TM. The Application of Metabolomics to Probiotic and Prebiotic Interventions in Human Clinical Studies. Metabolites 2020;10:E120. [PMID: 32213886 DOI: 10.3390/metabo10030120] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
49 Johnson CH, Spilker ME, Goetz L, Peterson SN, Siuzdak G. Metabolite and Microbiome Interplay in Cancer Immunotherapy. Cancer Res 2016;76:6146-52. [PMID: 27729325 DOI: 10.1158/0008-5472.CAN-16-0309] [Cited by in Crossref: 48] [Cited by in F6Publishing: 29] [Article Influence: 8.0] [Reference Citation Analysis]
50 Li H, Ma L, Li Z, Yin J, Tan B, Chen J, Jiang Q, Ma X. Evolution of the Gut Microbiota and Its Fermentation Characteristics of Ningxiang Pigs at the Young Stage. Animals (Basel) 2021;11:638. [PMID: 33673705 DOI: 10.3390/ani11030638] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
51 LaGamma EF, Hu F, Pena Cruz F, Bouchev P, Nankova BB. Bacteria - derived short chain fatty acids restore sympathoadrenal responsiveness to hypoglycemia after antibiotic-induced gut microbiota depletion. Neurobiol Stress 2021;15:100376. [PMID: 34401412 DOI: 10.1016/j.ynstr.2021.100376] [Reference Citation Analysis]
52 Sanchez-carrillo S, Ciordia S, Rojo D, Zubeldia-varela E, Méndez-garcía C, Martínez-martínez M, Barbas C, Ruiz-ruiz S, Moya A, Garriga M, Salazar N, Botella-carretero JI, Vega-piñero B, de los Reyes-gavilán CG, del Campo R, Ferrer M. A body weight loss- and health-promoting gut microbiota is established after bariatric surgery in individuals with severe obesity. Journal of Pharmaceutical and Biomedical Analysis 2021;193:113747. [DOI: 10.1016/j.jpba.2020.113747] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 4.0] [Reference Citation Analysis]
53 Quigley EMM, Gajula P. Recent advances in modulating the microbiome. F1000Res 2020;9:F1000 Faculty Rev-46. [PMID: 32047611 DOI: 10.12688/f1000research.20204.1] [Cited by in Crossref: 14] [Cited by in F6Publishing: 11] [Article Influence: 7.0] [Reference Citation Analysis]
54 Powles STR, Gallagher KI, Chong LWL, Alexander JL, Mullish BH, Hicks LC, McDonald JAK, Marchesi JR, Williams HRT, Orchard TR. Effects of bowel preparation on intestinal bacterial associated urine and faecal metabolites and the associated faecal microbiome. BMC Gastroenterol 2022;22:240. [PMID: 35562657 DOI: 10.1186/s12876-022-02301-1] [Reference Citation Analysis]
55 Wemheuer F, Taylor JA, Daniel R, Johnston E, Meinicke P, Thomas T, Wemheuer B. Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences. Environ Microbiome 2020;15:11. [PMID: 33902725 DOI: 10.1186/s40793-020-00358-7] [Cited by in Crossref: 51] [Cited by in F6Publishing: 36] [Article Influence: 25.5] [Reference Citation Analysis]
56 Tandon K, Wan MT, Yang CC, Yang SH, Baatar B, Chiu CY, Tsai JW, Liu WC, Ng CS, Tang SL. Aquatic microbial community is partially functionally redundant: Insights from an in situ reciprocal transplant experiment. Sci Total Environ 2021;786:147433. [PMID: 33971597 DOI: 10.1016/j.scitotenv.2021.147433] [Reference Citation Analysis]
57 Colas L, Mongodin EF, Montassier E, Chesneau M, Guerif P, Hittle L, Giral M, Bromberg JS, Brouard S;  DIVAT Consortium. Unique and specific Proteobacteria diversity in urinary microbiota of tolerant kidney transplanted recipients. Am J Transplant. 2020;20:145-158. [PMID: 31374143 DOI: 10.1111/ajt.15549] [Cited by in Crossref: 9] [Cited by in F6Publishing: 8] [Article Influence: 3.0] [Reference Citation Analysis]
58 Schapheer C, Pellens R, Scherson R. Arthropod-Microbiota Integration: Its Importance for Ecosystem Conservation. Front Microbiol 2021;12:702763. [PMID: 34408733 DOI: 10.3389/fmicb.2021.702763] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
59 Bost A, Martinson VG, Franzenburg S, Adair KL, Albasi A, Wells MT, Douglas AE. Functional variation in the gut microbiome of wild Drosophila populations. Mol Ecol 2018;27:2834-45. [DOI: 10.1111/mec.14728] [Cited by in Crossref: 25] [Cited by in F6Publishing: 19] [Article Influence: 6.3] [Reference Citation Analysis]
60 Renelies-Hamilton J, Germer K, Sillam-Dussès D, Bodawatta KH, Poulsen M. Disentangling the Relative Roles of Vertical Transmission, Subsequent Colonizations, and Diet on Cockroach Microbiome Assembly. mSphere 2021;6:e01023-20. [PMID: 33408228 DOI: 10.1128/mSphere.01023-20] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
61 Diether NE, Willing BP. Microbial Fermentation of Dietary Protein: An Important Factor in Diet⁻Microbe⁻Host Interaction. Microorganisms 2019;7:E19. [PMID: 30642098 DOI: 10.3390/microorganisms7010019] [Cited by in Crossref: 102] [Cited by in F6Publishing: 80] [Article Influence: 34.0] [Reference Citation Analysis]
62 Mcgovern AS, Hamlin AS, Winter G. A review of the antimicrobial side of antidepressants and its putative implications on the gut microbiome. Aust N Z J Psychiatry 2019;53:1151-66. [DOI: 10.1177/0004867419877954] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 2.0] [Reference Citation Analysis]
63 Derrien M, Veiga P. Rethinking Diet to Aid Human–Microbe Symbiosis. Trends in Microbiology 2017;25:100-12. [DOI: 10.1016/j.tim.2016.09.011] [Cited by in Crossref: 49] [Cited by in F6Publishing: 46] [Article Influence: 9.8] [Reference Citation Analysis]
64 Jung Y, Tagele SB, Son H, Ibal JC, Kerfahi D, Yun H, Lee B, Park CY, Kim ES, Kim SJ, Shin JH. Modulation of Gut Microbiota in Korean Navy Trainees following a Healthy Lifestyle Change. Microorganisms 2020;8:E1265. [PMID: 32825401 DOI: 10.3390/microorganisms8091265] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
65 Barroso-sousa R, Teles LT. Gut Microbiome and Breast Cancer in the Era of Cancer Immunotherapy. Curr Breast Cancer Rep 2019;11:272-6. [DOI: 10.1007/s12609-019-00346-y] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
66 Xie Z, Yan K, Kong L, Gai Y, Jin T, He Y, Wang Y, Chen F, Lin L, Lin Z, Xu H, Shao Z, Liu S, Wang D. Metabolic tuning of a stable microbial community in the surface oligotrophic Indian Ocean revealed by integrated meta-omics. Mar Life Sci Technol. [DOI: 10.1007/s42995-021-00119-6] [Reference Citation Analysis]
67 Lopes HFS, Tu Z, Sumi H, Yumoto I. Analysis of bacterial flora of indigo fermentation fluids utilizing composted indigo leaves (sukumo) and indigo extracted from plants (Ryukyu-ai and Indian indigo). J Biosci Bioeng 2021;132:279-86. [PMID: 34127379 DOI: 10.1016/j.jbiosc.2021.05.004] [Reference Citation Analysis]
68 Costa-roura S, Balcells J, de la Fuente G, Mora-gil J, Llanes N, Villalba D. Effects of protein restriction on performance, ruminal fermentation and microbial community in Holstein bulls fed high-concentrate diets. Animal Feed Science and Technology 2020;264:114479. [DOI: 10.1016/j.anifeedsci.2020.114479] [Cited by in Crossref: 4] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
69 Nathan NN, Philpott DJ, Girardin SE. The intestinal microbiota: from health to disease, and back. Microbes Infect 2021;23:104849. [PMID: 34146716 DOI: 10.1016/j.micinf.2021.104849] [Reference Citation Analysis]
70 Letten AD, Baumgartner M, Pfrunder-Cardozo KR, Levine JM, Hall AR. Human-associated microbiota suppress invading bacteria even under disruption by antibiotics. ISME J 2021;15:2809-12. [PMID: 33712700 DOI: 10.1038/s41396-021-00929-7] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
71 Serrano-Villar S, Ferrer M, Gosalbes MJ, Moreno S. How can the gut microbiota affect immune recovery in HIV-infected individuals? Future Microbiol 2017;12:195-9. [PMID: 28262047 DOI: 10.2217/fmb-2016-0226] [Cited by in Crossref: 5] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
72 Özkul C, Yalınay M, Karakan T. Islamic fasting leads to an increased abundance of Akkermansia muciniphila and Bacteroides fragilis group: A preliminary study on intermittent fasting. Turk J Gastroenterol 2019;30:1030-5. [PMID: 31854308 DOI: 10.5152/tjg.2019.19185] [Cited by in Crossref: 11] [Cited by in F6Publishing: 9] [Article Influence: 5.5] [Reference Citation Analysis]
73 Konjevod M, Nikolac Perkovic M, Sáiz J, Svob Strac D, Barbas C, Rojo D. Metabolomics analysis of microbiota-gut-brain axis in neurodegenerative and psychiatric diseases. J Pharm Biomed Anal 2021;194:113681. [PMID: 33279302 DOI: 10.1016/j.jpba.2020.113681] [Cited by in Crossref: 7] [Cited by in F6Publishing: 8] [Article Influence: 3.5] [Reference Citation Analysis]
74 Li C, Hu Y. Align resistant starch structures from plant-based foods with human gut microbiome for personalized health promotion. Crit Rev Food Sci Nutr 2021;:1-12. [PMID: 34515592 DOI: 10.1080/10408398.2021.1976722] [Reference Citation Analysis]
75 Ruuskanen MO, Sommeria-Klein G, Havulinna AS, Niiranen TJ, Lahti L. Modelling spatial patterns in host-associated microbial communities. Environ Microbiol 2021;23:2374-88. [PMID: 33734553 DOI: 10.1111/1462-2920.15462] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
76 Kong G, Ellul S, Narayana VK, Kanojia K, Ha HTT, Li S, Renoir T, Cao KL, Hannan AJ. An integrated metagenomics and metabolomics approach implicates the microbiota-gut-brain axis in the pathogenesis of Huntington's disease. Neurobiol Dis 2021;148:105199. [PMID: 33249136 DOI: 10.1016/j.nbd.2020.105199] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 3.5] [Reference Citation Analysis]
77 Frioux C, Fremy E, Trottier C, Siegel A. Scalable and exhaustive screening of metabolic functions carried out by microbial consortia. Bioinformatics 2018;34:i934-43. [PMID: 30423063 DOI: 10.1093/bioinformatics/bty588] [Cited by in Crossref: 9] [Cited by in F6Publishing: 6] [Article Influence: 3.0] [Reference Citation Analysis]
78 de Albuquerque TMR, Magnani M, Lima MDS, Castellano LRC, de Souza EL. Effects of digested flours from four different sweet potato (Ipomoea batatas L.) root varieties on the composition and metabolic activity of human colonic microbiota in vitro. J Food Sci 2021;86:3707-19. [PMID: 34287876 DOI: 10.1111/1750-3841.15852] [Reference Citation Analysis]
79 Röttjers L, Faust K. From hairballs to hypotheses-biological insights from microbial networks. FEMS Microbiol Rev 2018;42:761-80. [PMID: 30085090 DOI: 10.1093/femsre/fuy030] [Cited by in Crossref: 149] [Cited by in F6Publishing: 115] [Article Influence: 49.7] [Reference Citation Analysis]
80 Zhao M, Zhao J, Yuan J, Hale L, Wen T, Huang Q, Vivanco JM, Zhou J, Kowalchuk GA, Shen Q. Root exudates drive soil-microbe-nutrient feedbacks in response to plant growth. Plant Cell Environ 2021;44:613-28. [PMID: 33103781 DOI: 10.1111/pce.13928] [Cited by in Crossref: 10] [Cited by in F6Publishing: 6] [Article Influence: 5.0] [Reference Citation Analysis]
81 Vesterbacka J, Rivera J, Noyan K, Parera M, Neogi U, Calle M, Paredes R, Sönnerborg A, Noguera-Julian M, Nowak P. Richer gut microbiota with distinct metabolic profile in HIV infected Elite Controllers. Sci Rep 2017;7:6269. [PMID: 28740260 DOI: 10.1038/s41598-017-06675-1] [Cited by in Crossref: 45] [Cited by in F6Publishing: 42] [Article Influence: 9.0] [Reference Citation Analysis]
82 Gopalakrishnan V, Weiner B, Ford C, Sellman B, Hammond S, Freeman D, Dennis P, Soria J, Wortman J, Henn M. Intervention strategies for microbial therapeutics in cancer immunotherapy. Immuno-Oncology Technology 2020;6:9-17. [DOI: 10.1016/j.iotech.2020.05.001] [Cited by in Crossref: 5] [Cited by in F6Publishing: 1] [Article Influence: 2.5] [Reference Citation Analysis]
83 Wei F, Sun X, Gao Y, Dou H, Liu Y, Su L, Luo H, Zhu C, Zhang Q, Tong P, Ren W, Xun Z, Guo R, Guan Y, Li S, Qi Y, Qin J, Chen F, Zheng S. Is oral microbiome of children able to maintain resistance and functional stability in response to short-term interference of ingesta? Protein Cell 2021;12:502-10. [PMID: 32808158 DOI: 10.1007/s13238-020-00774-y] [Reference Citation Analysis]
84 Perez L, Scarcello E, Ibouraadaten S, Yakoub Y, Leinardi R, Ambroise J, Bearzatto B, Gala JL, Paquot A, Muccioli GG, Bouzin C, van den Brule S, Lison D. Dietary nanoparticles alter the composition and function of the gut microbiota in mice at dose levels relevant for human exposure. Food Chem Toxicol 2021;154:112352. [PMID: 34153347 DOI: 10.1016/j.fct.2021.112352] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
85 Horvat S, Mahnic A, Breskvar M, Dzeroski S, Rupnik M. Evaluating the effect of Clostridium difficile conditioned medium on fecal microbiota community structure. Sci Rep 2017;7:16448. [PMID: 29180685 DOI: 10.1038/s41598-017-15434-1] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 1.0] [Reference Citation Analysis]
86 Eng A, Hayden HS, Pope CE, Brittnacher MJ, Vo AT, Weiss EJ, Hager KR, Leung DH, Heltshe SL, Raftery D, Miller SI, Hoffman LR, Borenstein E. Infants with cystic fibrosis have altered fecal functional capacities with potential clinical and metabolic consequences. BMC Microbiol 2021;21:247. [PMID: 34525965 DOI: 10.1186/s12866-021-02305-z] [Reference Citation Analysis]
87 Walker W. Dysbiosis. The Microbiota in Gastrointestinal Pathophysiology. Elsevier; 2017. pp. 227-32. [DOI: 10.1016/b978-0-12-804024-9.00025-2] [Cited by in Crossref: 5] [Article Influence: 1.0] [Reference Citation Analysis]
88 Méndez-García C, Barbas C, Ferrer M, Rojo D. Complementary Methodologies To Investigate Human Gut Microbiota in Host Health, Working towards Integrative Systems Biology. J Bacteriol 2018;200:e00376-17. [PMID: 28874411 DOI: 10.1128/JB.00376-17] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
89 Di Cristanziano V, Farowski F, Berrilli F, Santoro M, Di Cave D, Glé C, Daeumer M, Thielen A, Wirtz M, Kaiser R, Eberhardt KA, Vehreschild MJGT, D'Alfonso R. Analysis of Human Gut Microbiota Composition Associated to the Presence of Commensal and Pathogen Microorganisms in Côte d'Ivoire. Microorganisms 2021;9:1763. [PMID: 34442844 DOI: 10.3390/microorganisms9081763] [Reference Citation Analysis]
90 Nichols RG, Davenport ER. The relationship between the gut microbiome and host gene expression: a review. Hum Genet 2021;140:747-60. [PMID: 33221945 DOI: 10.1007/s00439-020-02237-0] [Cited by in Crossref: 4] [Cited by in F6Publishing: 8] [Article Influence: 2.0] [Reference Citation Analysis]
91 Hall CV, Lord A, Betzel R, Zakrzewski M, Simms LA, Zalesky A, Radford-Smith G, Cocchi L. Co-existence of Network Architectures Supporting the Human Gut Microbiome. iScience 2019;22:380-91. [PMID: 31812808 DOI: 10.1016/j.isci.2019.11.032] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 2.3] [Reference Citation Analysis]
92 Aruoma OI, Hausman-cohen S, Pizano J, Schmidt MA, Minich DM, Joffe Y, Brandhorst S, Evans SJ, Brady DM. Personalized Nutrition: Translating the Science of NutriGenomics Into Practice: Proceedings From the 2018 American College of Nutrition Meeting. Journal of the American College of Nutrition 2018;38:287-301. [DOI: 10.1080/07315724.2019.1582980] [Cited by in Crossref: 11] [Cited by in F6Publishing: 13] [Article Influence: 3.7] [Reference Citation Analysis]
93 Ruiz-Ruiz S, Sanchez-Carrillo S, Ciordia S, Mena MC, Méndez-García C, Rojo D, Bargiela R, Zubeldia-Varela E, Martínez-Martínez M, Barbas C, Ferrer M, Moya A. Functional microbiome deficits associated with ageing: Chronological age threshold. Aging Cell 2020;19:e13063. [PMID: 31730262 DOI: 10.1111/acel.13063] [Cited by in Crossref: 14] [Cited by in F6Publishing: 14] [Article Influence: 4.7] [Reference Citation Analysis]
94 Moraes LC, Lang PM, Arcanjo RA, Rampelotto PH, Fatturi-Parolo CC, Ferreira MBC, Montagner F. Microbial ecology and predicted metabolic pathways in various oral environments from patients with acute endodontic infections. Int Endod J 2020;53:1603-17. [PMID: 33448446 DOI: 10.1111/iej.13389] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
95 García MG, Pérez-Cárceles MD, Osuna E, Legaz I. Impact of the Human Microbiome in Forensic Sciences: a Systematic Review. Appl Environ Microbiol 2020;86:e01451-20. [PMID: 32887714 DOI: 10.1128/AEM.01451-20] [Cited by in Crossref: 4] [Cited by in F6Publishing: 5] [Article Influence: 2.0] [Reference Citation Analysis]
96 Verhoeven J, Keller D, Verbruggen S, Abboud KY, Venema K. A blend of 3 mushrooms dose-dependently increases butyrate production by the gut microbiota. Benef Microbes 2021;12:601-12. [PMID: 34590532 DOI: 10.3920/BM2021.0015] [Reference Citation Analysis]
97 Moen AEF, Lindstrøm JC, Tannæs TM, Vatn S, Ricanek P, Vatn MH, Jahnsen J; IBD-Character Consortium. The prevalence and transcriptional activity of the mucosal microbiota of ulcerative colitis patients. Sci Rep 2018;8:17278. [PMID: 30467421 DOI: 10.1038/s41598-018-35243-4] [Cited by in Crossref: 7] [Cited by in F6Publishing: 8] [Article Influence: 1.8] [Reference Citation Analysis]
98 Alberdi A, Andersen SB, Limborg MT, Dunn RR, Gilbert MTP. Disentangling host-microbiota complexity through hologenomics. Nat Rev Genet 2021. [PMID: 34675394 DOI: 10.1038/s41576-021-00421-0] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
99 Wang Y, Lu L, Hong Y, Wu J, Zhu G, Ye F, Li Z. Divergent responses of taxonomic and predicted functional profiles of bacterioplankton to reservoir impoundment. Environ Res 2020;182:109083. [PMID: 31901627 DOI: 10.1016/j.envres.2019.109083] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 1.7] [Reference Citation Analysis]
100 King KC, Stevens E, Drew GC. Microbiome: Evolution in a World of Interaction. Curr Biol 2020;30:R265-7. [PMID: 32208149 DOI: 10.1016/j.cub.2020.02.010] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
101 Schneider T. Can We Talk About Feminist Epistemic Values Beyond Gender? Lessons from the Gut Microbiome. Biol Theory 2020;15:25-38. [DOI: 10.1007/s13752-019-00335-5] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 1.3] [Reference Citation Analysis]
102 Serrano-Villar S, Rojo D, Martínez-Martínez M, Deusch S, Vázquez-Castellanos JF, Sainz T, Vera M, Moreno S, Estrada V, Gosalbes MJ, Latorre A, Margolles A, Seifert J, Barbas C, Moya A, Ferrer M. HIV infection results in metabolic alterations in the gut microbiota different from those induced by other diseases. Sci Rep 2016;6:26192. [PMID: 27189771 DOI: 10.1038/srep26192] [Cited by in Crossref: 31] [Cited by in F6Publishing: 27] [Article Influence: 5.2] [Reference Citation Analysis]
103 Bost A, Franzenburg S, Adair KL, Martinson VG, Loeb G, Douglas AE. How gut transcriptional function of Drosophila melanogaster varies with the presence and composition of the gut microbiota. Mol Ecol 2018;27:1848-59. [DOI: 10.1111/mec.14413] [Cited by in Crossref: 28] [Cited by in F6Publishing: 18] [Article Influence: 5.6] [Reference Citation Analysis]
104 Xiong J, Dai W, Qiu Q, Zhu J, Yang W, Li C. Response of host-bacterial colonization in shrimp to developmental stage, environment and disease. Mol Ecol 2018;27:3686-99. [PMID: 30070062 DOI: 10.1111/mec.14822] [Cited by in Crossref: 32] [Cited by in F6Publishing: 25] [Article Influence: 8.0] [Reference Citation Analysis]
105 Sommer F, Anderson JM, Bharti R, Raes J, Rosenstiel P. The resilience of the intestinal microbiota influences health and disease. Nat Rev Microbiol 2017;15:630-8. [DOI: 10.1038/nrmicro.2017.58] [Cited by in Crossref: 305] [Cited by in F6Publishing: 275] [Article Influence: 61.0] [Reference Citation Analysis]
106 Sharon G, Sampson TR, Geschwind DH, Mazmanian SK. The Central Nervous System and the Gut Microbiome. Cell. 2016;167:915-932. [PMID: 27814521 DOI: 10.1016/j.cell.2016.10.027] [Cited by in Crossref: 515] [Cited by in F6Publishing: 472] [Article Influence: 103.0] [Reference Citation Analysis]
107 Mo Q, Liu T, Fu A, Ruan S, Zhong H, Tang J, Zhao M, Li Y, Zhu S, Cai H, Feng F. Novel Gut Microbiota Patterns Involved in the Attenuation of Dextran Sodium Sulfate-Induced Mouse Colitis Mediated by Glycerol Monolaurate via Inducing Anti-inflammatory Responses. mBio 2021;12:e0214821. [PMID: 34634946 DOI: 10.1128/mBio.02148-21] [Reference Citation Analysis]
108 Deehan EC, Yang C, Perez-Muñoz ME, Nguyen NK, Cheng CC, Triador L, Zhang Z, Bakal JA, Walter J. Precision Microbiome Modulation with Discrete Dietary Fiber Structures Directs Short-Chain Fatty Acid Production. Cell Host Microbe 2020;27:389-404.e6. [PMID: 32004499 DOI: 10.1016/j.chom.2020.01.006] [Cited by in Crossref: 80] [Cited by in F6Publishing: 75] [Article Influence: 40.0] [Reference Citation Analysis]
109 Slinger J, Adams MB, Stratford CN, Rigby M, Wynne JW. The Effect of Antimicrobial Treatment upon the Gill Bacteriome of Atlantic Salmon (Salmo salar L.) and Progression of Amoebic Gill Disease (AGD) In Vivo. Microorganisms 2021;9:987. [PMID: 34063289 DOI: 10.3390/microorganisms9050987] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
110 Jin H, Riaz Rajoka MS, Xu X, Liao N, Pang B, Yan L, Liu G, Sun H, Jiang C, Shao D, Barba FJ, Shi J. Potentials of orally supplemented selenium-enriched Lacticaseibacillus rhamnosus to mitigate the lead induced liver and intestinal tract injury. Environ Pollut 2022;302:119062. [PMID: 35231537 DOI: 10.1016/j.envpol.2022.119062] [Reference Citation Analysis]
111 de Bruijn I, Liu Y, Wiegertjes GF, Raaijmakers JM. Exploring fish microbial communities to mitigate emerging diseases in aquaculture. FEMS Microbiology Ecology 2017;94. [DOI: 10.1093/femsec/fix161] [Cited by in Crossref: 58] [Cited by in F6Publishing: 38] [Article Influence: 11.6] [Reference Citation Analysis]
112 Li Y, Chen T, Li Y, Tang Y, Huang Z. Gut microbiota are associated with sex and age of host: Evidence from semi-provisioned rhesus macaques in southwest Guangxi, China. Ecol Evol 2021;11:8096-122. [PMID: 34188874 DOI: 10.1002/ece3.7643] [Reference Citation Analysis]
113 Ranjbar R, Vahdati SN, Tavakoli S, Khodaie R, Behboudi H. Immunomodulatory roles of microbiota-derived short-chain fatty acids in bacterial infections. Biomed Pharmacother 2021;141:111817. [PMID: 34126349 DOI: 10.1016/j.biopha.2021.111817] [Reference Citation Analysis]
114 Mulligan CM, Friedman JE. Maternal modifiers of the infant gut microbiota: metabolic consequences. J Endocrinol 2017;235:R1-R12. [PMID: 28751453 DOI: 10.1530/JOE-17-0303] [Cited by in Crossref: 52] [Cited by in F6Publishing: 25] [Article Influence: 10.4] [Reference Citation Analysis]
115 Segrist E, Cherry S. Using Diverse Model Systems to Define Intestinal Epithelial Defenses to Enteric Viral Infections. Cell Host Microbe 2020;27:329-44. [PMID: 32164844 DOI: 10.1016/j.chom.2020.02.003] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 3.0] [Reference Citation Analysis]
116 Evariste L, Barret M, Mottier A, Mouchet F, Gauthier L, Pinelli E. Gut microbiota of aquatic organisms: A key endpoint for ecotoxicological studies. Environmental Pollution 2019;248:989-99. [DOI: 10.1016/j.envpol.2019.02.101] [Cited by in Crossref: 56] [Cited by in F6Publishing: 45] [Article Influence: 18.7] [Reference Citation Analysis]
117 Costa-roura S, Balcells J, de la Fuente G, Mora-gil J, Llanes N, Villalba D. Nutrient utilization efficiency, ruminal fermentation and microbial community in Holstein bulls fed concentrate-based diets with different forage source. Animal Feed Science and Technology 2020;269:114662. [DOI: 10.1016/j.anifeedsci.2020.114662] [Cited by in Crossref: 2] [Article Influence: 1.0] [Reference Citation Analysis]
118 Ferrer M, Méndez-García C, Rojo D, Barbas C, Moya A. Antibiotic use and microbiome function. Biochem Pharmacol 2017;134:114-26. [PMID: 27641814 DOI: 10.1016/j.bcp.2016.09.007] [Cited by in Crossref: 106] [Cited by in F6Publishing: 95] [Article Influence: 17.7] [Reference Citation Analysis]
119 Bardanzellu F, Fanos V, Reali A. "Omics" in Human Colostrum and Mature Milk: Looking to Old Data with New Eyes. Nutrients 2017;9:E843. [PMID: 28783113 DOI: 10.3390/nu9080843] [Cited by in Crossref: 38] [Cited by in F6Publishing: 36] [Article Influence: 7.6] [Reference Citation Analysis]
120 Sanders ME, Merenstein DJ, Reid G, Gibson GR, Rastall RA. Probiotics and prebiotics in intestinal health and disease: from biology to the clinic. Nat Rev Gastroenterol Hepatol. 2019;16:605-616. [PMID: 31296969 DOI: 10.1038/s41575-019-0173-3] [Cited by in Crossref: 251] [Cited by in F6Publishing: 218] [Article Influence: 83.7] [Reference Citation Analysis]
121 Morrison PK, Newbold CJ, Jones E, Worgan HJ, Grove-White DH, Dugdale AH, Barfoot C, Harris PA, Argo CM. The Equine Gastrointestinal Microbiome: Impacts of Age and Obesity. Front Microbiol 2018;9:3017. [PMID: 30581426 DOI: 10.3389/fmicb.2018.03017] [Cited by in Crossref: 24] [Cited by in F6Publishing: 22] [Article Influence: 6.0] [Reference Citation Analysis]
122 Lopes DRG, La Reau AJ, Duarte MS, Detmann E, Bento CBP, Mercadante MEZ, Bonilha SFM, Suen G, Mantovani HC. The Bacterial and Fungal Microbiota of Nelore Steers Is Dynamic Across the Gastrointestinal Tract and Its Fecal-Associated Microbiota Is Correlated to Feed Efficiency. Front Microbiol 2019;10:1263. [PMID: 31293524 DOI: 10.3389/fmicb.2019.01263] [Cited by in Crossref: 7] [Cited by in F6Publishing: 4] [Article Influence: 2.3] [Reference Citation Analysis]
123 Bardanzellu F, Fanos V, Strigini FAL, Artini PG, Peroni DG. Human Breast Milk: Exploring the Linking Ring Among Emerging Components. Front Pediatr 2018;6:215. [PMID: 30131948 DOI: 10.3389/fped.2018.00215] [Cited by in Crossref: 22] [Cited by in F6Publishing: 19] [Article Influence: 5.5] [Reference Citation Analysis]
124 Sitkin SI, Vakhitov TY, Demyanova EV. Microbiome, gut dysbiosis and inflammatory bowel disease: That moment when the function is more important than taxonomy. Alʹm klin med 2018;46:396-425. [DOI: 10.18786/2072-0505-2018-46-5-396-425] [Cited by in Crossref: 12] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
125 Ocáriz-Díez M, Cruellas M, Gascón M, Lastra R, Martínez-Lostao L, Ramírez-Labrada A, Paño JR, Sesma A, Torres I, Yubero A, Pardo J, Isla D, Gálvez EM. Microbiota and Lung Cancer. Opportunities and Challenges for Improving Immunotherapy Efficacy. Front Oncol 2020;10:568939. [PMID: 33117698 DOI: 10.3389/fonc.2020.568939] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
126 Jain T, Sharma P, Are AC, Vickers SM, Dudeja V. New Insights Into the Cancer-Microbiome-Immune Axis: Decrypting a Decade of Discoveries. Front Immunol 2021;12:622064. [PMID: 33708214 DOI: 10.3389/fimmu.2021.622064] [Cited by in Crossref: 7] [Cited by in F6Publishing: 8] [Article Influence: 7.0] [Reference Citation Analysis]
127 Choo JM, Trim PJ, Leong LEX, Abell GCJ, Brune C, Jeffries N, Wesselingh S, Dear TN, Snel MF, Rogers GB. Inbred Mouse Populations Exhibit Intergenerational Changes in Intestinal Microbiota Composition and Function Following Introduction to a Facility. Front Microbiol 2017;8:608. [PMID: 28443082 DOI: 10.3389/fmicb.2017.00608] [Cited by in Crossref: 9] [Cited by in F6Publishing: 13] [Article Influence: 1.8] [Reference Citation Analysis]
128 Choo JM, Kanno T, Zain NM, Leong LE, Abell GC, Keeble JE, Bruce KD, Mason AJ, Rogers GB. Divergent Relationships between Fecal Microbiota and Metabolome following Distinct Antibiotic-Induced Disruptions. mSphere 2017;2:e00005-17. [PMID: 28194448 DOI: 10.1128/mSphere.00005-17] [Cited by in Crossref: 16] [Cited by in F6Publishing: 10] [Article Influence: 3.2] [Reference Citation Analysis]
129 Hooks KB, O'Malley MA. Dysbiosis and Its Discontents. mBio 2017;8:e01492-17. [PMID: 29018121 DOI: 10.1128/mBio.01492-17] [Cited by in Crossref: 94] [Cited by in F6Publishing: 64] [Article Influence: 18.8] [Reference Citation Analysis]
130 Sun J, Cao Z, Smith AD, Carlson Jr PE, Coryell M, Chen H, Beger RD. Evaluating Cefoperazone-Induced Gut Metabolic Functional Changes in MR1-Deficient Mice. Metabolites 2022;12:380. [DOI: 10.3390/metabo12050380] [Reference Citation Analysis]
131 Hernández-gómez O, Briggler JT, Williams RN. Captivity-Induced Changes in the Skin Microbial Communities of Hellbenders (Cryptobranchus alleganiensis). Microb Ecol 2019;77:782-93. [DOI: 10.1007/s00248-018-1258-1] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.8] [Reference Citation Analysis]
132 Ruiz A, Cerdó T, Jáuregui R, Pieper DH, Marcos A, Clemente A, García F, Margolles A, Ferrer M, Campoy C, Suárez A. One-year calorie restriction impacts gut microbial composition but not its metabolic performance in obese adolescents. Environ Microbiol 2017;19:1536-51. [PMID: 28251782 DOI: 10.1111/1462-2920.13713] [Cited by in Crossref: 29] [Cited by in F6Publishing: 28] [Article Influence: 5.8] [Reference Citation Analysis]
133 Galloway-Peña JR, Smith DP, Sahasrabhojane P, Wadsworth WD, Fellman BM, Ajami NJ, Shpall EJ, Daver N, Guindani M, Petrosino JF, Kontoyiannis DP, Shelburne SA. Characterization of oral and gut microbiome temporal variability in hospitalized cancer patients. Genome Med 2017;9:21. [PMID: 28245856 DOI: 10.1186/s13073-017-0409-1] [Cited by in Crossref: 43] [Cited by in F6Publishing: 44] [Article Influence: 8.6] [Reference Citation Analysis]
134 Pereira FC, Berry D. Microbial nutrient niches in the gut. Environ Microbiol 2017;19:1366-78. [PMID: 28035742 DOI: 10.1111/1462-2920.13659] [Cited by in Crossref: 127] [Cited by in F6Publishing: 103] [Article Influence: 25.4] [Reference Citation Analysis]
135 Ramos C, Calus M, Schokker D. Persistence of functional microbiota composition across generations. Sci Rep 2021;11:19007. [PMID: 34561474 DOI: 10.1038/s41598-021-98097-3] [Reference Citation Analysis]
136 Guo XY, Liu XJ, Hao JY. Gut microbiota in ulcerative colitis: insights on pathogenesis and treatment. J Dig Dis. 2020;21:147-159. [PMID: 32040250 DOI: 10.1111/1751-2980.12849] [Cited by in Crossref: 17] [Cited by in F6Publishing: 17] [Article Influence: 17.0] [Reference Citation Analysis]
137 Baltrus DA. Adaptation, specialization, and coevolution within phytobiomes. Curr Opin Plant Biol 2017;38:109-16. [PMID: 28545003 DOI: 10.1016/j.pbi.2017.04.023] [Cited by in Crossref: 26] [Cited by in F6Publishing: 21] [Article Influence: 5.2] [Reference Citation Analysis]
138 Lee W, Hayakawa T, Kiyono M, Yamabata N, Hanya G. Gut microbiota composition of Japanese macaques associates with extent of human encroachment. Am J Primatol 2019;81:e23072. [PMID: 31788810 DOI: 10.1002/ajp.23072] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 2.3] [Reference Citation Analysis]
139 Muñoz-Benavent M, Hartkopf F, Van Den Bossche T, Piro VC, García-Ferris C, Latorre A, Renard BY, Muth T. gNOMO: a multi-omics pipeline for integrated host and microbiome analysis of non-model organisms. NAR Genom Bioinform 2020;2:lqaa058. [PMID: 33575609 DOI: 10.1093/nargab/lqaa058] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
140 Bodawatta KH, Koane B, Maiah G, Sam K, Poulsen M, Jønsson KA. Species-specific but not phylosymbiotic gut microbiomes of New Guinean passerine birds are shaped by diet and flight-associated gut modifications. Proc Biol Sci 2021;288:20210446. [PMID: 33878920 DOI: 10.1098/rspb.2021.0446] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
141 Ravcheev DA, Thiele I. Comparative Genomic Analysis of the Human Gut Microbiome Reveals a Broad Distribution of Metabolic Pathways for the Degradation of Host-Synthetized Mucin Glycans and Utilization of Mucin-Derived Monosaccharides. Front Genet 2017;8:111. [PMID: 28912798 DOI: 10.3389/fgene.2017.00111] [Cited by in Crossref: 38] [Cited by in F6Publishing: 32] [Article Influence: 7.6] [Reference Citation Analysis]
142 Salvato F, Hettich RL, Kleiner M. Five key aspects of metaproteomics as a tool to understand functional interactions in host-associated microbiomes. PLoS Pathog 2021;17:e1009245. [PMID: 33630960 DOI: 10.1371/journal.ppat.1009245] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 3.0] [Reference Citation Analysis]
143 Kvakova M, Bertkova I, Stofilova J, Savidge TC. Co-Encapsulated Synbiotics and Immobilized Probiotics in Human Health and Gut Microbiota Modulation. Foods 2021;10:1297. [PMID: 34200108 DOI: 10.3390/foods10061297] [Reference Citation Analysis]
144 Ma Z(, Ellison AM. A unified concept of dominance applicable at both community and species scales. Ecosphere 2018;9:e02477. [DOI: 10.1002/ecs2.2477] [Cited by in Crossref: 9] [Cited by in F6Publishing: 1] [Article Influence: 2.3] [Reference Citation Analysis]
145 Yoon MY, Yoon SS. Disruption of the Gut Ecosystem by Antibiotics. Yonsei Med J 2018;59:4-12. [PMID: 29214770 DOI: 10.3349/ymj.2018.59.1.4] [Cited by in Crossref: 66] [Cited by in F6Publishing: 50] [Article Influence: 16.5] [Reference Citation Analysis]
146 Wei X, Jiang S, Zhao X, Li H, Lin W, Li B, Lu J, Sun Y, Yuan J. Community-Metabolome Correlations of Gut Microbiota from Child-Turcotte-Pugh of A and B Patients. Front Microbiol 2016;7:1856. [PMID: 27899923 DOI: 10.3389/fmicb.2016.01856] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.5] [Reference Citation Analysis]
147 Bik EM, Ugalde JA, Cousins J, Goddard AD, Richman J, Apte ZS. Microbial biotransformations in the human distal gut. Br J Pharmacol 2018;175:4404-14. [PMID: 29116650 DOI: 10.1111/bph.14085] [Cited by in Crossref: 23] [Cited by in F6Publishing: 16] [Article Influence: 4.6] [Reference Citation Analysis]
148 Aliakbari A, Zemb O, Billon Y, Barilly C, Ahn I, Riquet J, Gilbert H. Genetic relationships between feed efficiency and gut microbiome in pig lines selected for residual feed intake. J Anim Breed Genet 2021;138:491-507. [PMID: 33634901 DOI: 10.1111/jbg.12539] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
149 Papageorgiou M, Biver E. Interactions of the microbiome with pharmacological and non-pharmacological approaches for the management of ageing-related musculoskeletal diseases. Ther Adv Musculoskelet Dis 2021;13:1759720X211009018. [PMID: 34104230 DOI: 10.1177/1759720X211009018] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
150 Diwan AD, Harke SN, Gopalkrishna, Panche AN. Aquaculture industry prospective from gut microbiome of fish and shellfish: An overview. J Anim Physiol Anim Nutr (Berl) 2021. [PMID: 34355428 DOI: 10.1111/jpn.13619] [Reference Citation Analysis]
151 Hardoim CCP, Lôbo-Hajdu G, Custódio MR, Hardoim PR. Prokaryotic, Fungal, and Unicellular Eukaryotic Core Communities Across Three Sympatric Marine Sponges From the Southwestern Atlantic Coast Are Dominated Largely by Deterministic Assemblage Processes. Front Microbiol 2021;12:674004. [PMID: 34168631 DOI: 10.3389/fmicb.2021.674004] [Reference Citation Analysis]
152 Bodawatta KH, Freiberga I, Puzejova K, Sam K, Poulsen M, Jønsson KA. Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets. Anim Microbiome 2021;3:20. [PMID: 33602335 DOI: 10.1186/s42523-021-00076-6] [Cited by in Crossref: 5] [Cited by in F6Publishing: 6] [Article Influence: 5.0] [Reference Citation Analysis]
153 Santos-Garcia D, Mestre-Rincon N, Zchori-Fein E, Morin S. Inside out: microbiota dynamics during host-plant adaptation of whiteflies. ISME J 2020;14:847-56. [PMID: 31896788 DOI: 10.1038/s41396-019-0576-8] [Cited by in Crossref: 13] [Cited by in F6Publishing: 11] [Article Influence: 6.5] [Reference Citation Analysis]
154 Eng A, Borenstein E. Taxa-function robustness in microbial communities. Microbiome 2018;6:45. [PMID: 29499759 DOI: 10.1186/s40168-018-0425-4] [Cited by in Crossref: 22] [Cited by in F6Publishing: 20] [Article Influence: 5.5] [Reference Citation Analysis]
155 Serrano-Villar S, Vázquez-Castellanos JF, Vallejo A, Latorre A, Sainz T, Ferrando-Martínez S, Rojo D, Martínez-Botas J, Del Romero J, Madrid N, Leal M, Mosele JI, Motilva MJ, Barbas C, Ferrer M, Moya A, Moreno S, Gosalbes MJ, Estrada V. The effects of prebiotics on microbial dysbiosis, butyrate production and immunity in HIV-infected subjects. Mucosal Immunol 2017;10:1279-93. [PMID: 28000678 DOI: 10.1038/mi.2016.122] [Cited by in Crossref: 56] [Cited by in F6Publishing: 51] [Article Influence: 9.3] [Reference Citation Analysis]
156 Sánchez-Quinto A, Cerqueda-García D, Falcón LI, Gaona O, Martínez-Correa S, Nieto J, G-Santoyo I. Gut Microbiome in Children from Indigenous and Urban Communities in México: Different Subsistence Models, Different Microbiomes. Microorganisms 2020;8:E1592. [PMID: 33081076 DOI: 10.3390/microorganisms8101592] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
157 Mayneris-Perxachs J, Fernández-Real JM. Exploration of the microbiota and metabolites within body fluids could pinpoint novel disease mechanisms. FEBS J 2020;287:856-65. [PMID: 31709683 DOI: 10.1111/febs.15130] [Cited by in Crossref: 4] [Cited by in F6Publishing: 5] [Article Influence: 1.3] [Reference Citation Analysis]
158 Ankrah NYD, Barker BE, Song J, Wu C, McMullen JG 2nd, Douglas AE. Predicted Metabolic Function of the Gut Microbiota of Drosophila melanogaster. mSystems 2021;6:e01369-20. [PMID: 33947801 DOI: 10.1128/mSystems.01369-20] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
159 Belcour A, Frioux C, Aite M, Bretaudeau A, Hildebrand F, Siegel A. Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species. Elife 2020;9:e61968. [PMID: 33372654 DOI: 10.7554/eLife.61968] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.5] [Reference Citation Analysis]
160 Wang H, Li S, Fang S, Yang X, Feng J. Betaine Improves Intestinal Functions by Enhancing Digestive Enzymes, Ameliorating Intestinal Morphology, and Enriching Intestinal Microbiota in High-salt stressed Rats. Nutrients 2018;10:E907. [PMID: 30012963 DOI: 10.3390/nu10070907] [Cited by in Crossref: 17] [Cited by in F6Publishing: 16] [Article Influence: 4.3] [Reference Citation Analysis]
161 Liu S, Tun HM, Leung FC, Bennett DC, Zhang H, Cheng KM. Interaction of genotype and diet on small intestine microbiota of Japanese quail fed a cholesterol enriched diet. Sci Rep 2018;8:2381. [PMID: 29402949 DOI: 10.1038/s41598-018-20508-9] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 1.5] [Reference Citation Analysis]
162 Ayayee PA, Ondrejech A, Keeney G, Muñoz-Garcia A. The role of gut microbiota in the regulation of standard metabolic rate in female Periplaneta americana. PeerJ 2018;6:e4717. [PMID: 29844953 DOI: 10.7717/peerj.4717] [Cited by in Crossref: 9] [Cited by in F6Publishing: 8] [Article Influence: 2.3] [Reference Citation Analysis]
163 Ferrer M, Raczkowska BA, Martínez-martínez M, Barbas C, Rojo D. Phenotyping of gut microbiota: Focus on capillary electrophoresis: CE and CEC. ELECTROPHORESIS 2017;38:2275-86. [DOI: 10.1002/elps.201700056] [Cited by in Crossref: 7] [Cited by in F6Publishing: 4] [Article Influence: 1.4] [Reference Citation Analysis]
164 Koskella B, Hall LJ, Metcalf CJE. The microbiome beyond the horizon of ecological and evolutionary theory. Nat Ecol Evol 2017;1:1606-15. [DOI: 10.1038/s41559-017-0340-2] [Cited by in Crossref: 134] [Cited by in F6Publishing: 91] [Article Influence: 26.8] [Reference Citation Analysis]
165 Bayer G, Ganobis CM, Allen-Vercoe E, Philpott DJ. Defined gut microbial communities: promising tools to understand and combat disease. Microbes Infect 2021;23:104816. [PMID: 33785422 DOI: 10.1016/j.micinf.2021.104816] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
166 Khan MAW, Stephens WZ, Mohammed AD, Round JL, Kubinak JL. Does MHC heterozygosity influence microbiota form and function? PLoS One 2019;14:e0215946. [PMID: 31095603 DOI: 10.1371/journal.pone.0215946] [Cited by in Crossref: 8] [Cited by in F6Publishing: 5] [Article Influence: 2.7] [Reference Citation Analysis]
167 Rouanet A, Bolca S, Bru A, Claes I, Cvejic H, Girgis H, Harper A, Lavergne SN, Mathys S, Pane M, Pot B, Shortt C, Alkema W, Bezulowsky C, Blanquet-Diot S, Chassard C, Claus SP, Hadida B, Hemmingsen C, Jeune C, Lindman B, Midzi G, Mogna L, Movitz C, Nasir N, Oberreither M, Seegers JFML, Sterkman L, Valo A, Vieville F, Cordaillat-Simmons M. Live Biotherapeutic Products, A Road Map for Safety Assessment. Front Med (Lausanne) 2020;7:237. [PMID: 32637416 DOI: 10.3389/fmed.2020.00237] [Cited by in Crossref: 13] [Cited by in F6Publishing: 12] [Article Influence: 6.5] [Reference Citation Analysis]
168 Lee JS, Wang RX, Alexeev EE, Colgan SP. Intestinal Inflammation as a Dysbiosis of Energy Procurement: New Insights into an Old Topic. Gut Microbes 2021;13:1-20. [PMID: 33583319 DOI: 10.1080/19490976.2021.1880241] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 5.0] [Reference Citation Analysis]
169 Oña L, Kost C. Cooperation increases robustness to ecological disturbance in microbial cross-feeding networks. Ecol Lett 2022. [PMID: 35384221 DOI: 10.1111/ele.14006] [Reference Citation Analysis]
170 Escalas A, Troussellier M, Yuan T, Bouvier T, Bouvier C, Mouchet MA, Flores Hernandez D, Ramos Miranda J, Zhou J, Mouillot D. Functional diversity and redundancy across fish gut, sediment and water bacterial communities. Environ Microbiol 2017;19:3268-82. [PMID: 28618142 DOI: 10.1111/1462-2920.13822] [Cited by in Crossref: 13] [Cited by in F6Publishing: 10] [Article Influence: 2.6] [Reference Citation Analysis]
171 Szurkowska J, Wiącek J, Laparidis K, Karolkiewicz J. A Comparative Study of Selected Gut Bacteria Abundance and Fecal pH in Bodybuilders Eating High-Protein Diet and More Sedentary Controls. Nutrients 2021;13:4093. [PMID: 34836348 DOI: 10.3390/nu13114093] [Reference Citation Analysis]
172 Kubacka A, Rojo D, Muñoz-Batista MJ, Barbas C, Fernández-García M, Ferrer M. Metabolomics reveals synergy between Ag and g-C3N4 in Ag/g-C3N4 composite photocatalysts: a unique feature among Ag-doped biocidal materials. Metabolomics 2021;17:53. [PMID: 34061256 DOI: 10.1007/s11306-021-01804-4] [Reference Citation Analysis]
173 Jacobson DK, Honap TP, Monroe C, Lund J, Houk BA, Novotny AC, Robin C, Marini E, Lewis CM Jr. Functional diversity of microbial ecologies estimated from ancient human coprolites and dental calculus. Philos Trans R Soc Lond B Biol Sci 2020;375:20190586. [PMID: 33012230 DOI: 10.1098/rstb.2019.0586] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]
174 O’malley MA, Skillings DJ. Methodological Strategies in Microbiome Research and their Explanatory Implications. Perspectives on Science 2018;26:239-65. [DOI: 10.1162/posc_a_00274] [Cited by in Crossref: 10] [Article Influence: 2.5] [Reference Citation Analysis]
175 Thiele I, Clancy CM, Heinken A, Fleming RMT. Quantitative systems pharmacology and the personalized drug-microbiota-diet axis. Curr Opin Syst Biol 2017;4:43-52. [PMID: 32984662 DOI: 10.1016/j.coisb.2017.06.001] [Cited by in Crossref: 29] [Cited by in F6Publishing: 14] [Article Influence: 5.8] [Reference Citation Analysis]
176 Ashaolu TJ, Ashaolu JO, Adeyeye SAO. Fermentation of prebiotics by human colonic microbiota in vitro and short-chain fatty acids production: a critical review. J Appl Microbiol 2021;130:677-87. [PMID: 32892434 DOI: 10.1111/jam.14843] [Cited by in Crossref: 5] [Cited by in F6Publishing: 3] [Article Influence: 2.5] [Reference Citation Analysis]
177 Breuninger TA, Wawro N, Breuninger J, Reitmeier S, Clavel T, Six-Merker J, Pestoni G, Rohrmann S, Rathmann W, Peters A, Grallert H, Meisinger C, Haller D, Linseisen J. Associations between habitual diet, metabolic disease, and the gut microbiota using latent Dirichlet allocation. Microbiome 2021;9:61. [PMID: 33726846 DOI: 10.1186/s40168-020-00969-9] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
178 Sokoya T, Steel HC, Nieuwoudt M, Rossouw TM. HIV as a Cause of Immune Activation and Immunosenescence. Mediators Inflamm 2017;2017:6825493. [PMID: 29209103 DOI: 10.1155/2017/6825493] [Cited by in Crossref: 59] [Cited by in F6Publishing: 56] [Article Influence: 11.8] [Reference Citation Analysis]
179 Johnson KV, Foster KR. Why does the microbiome affect behaviour? Nat Rev Microbiol. 2018;16:647-655. [PMID: 29691482 DOI: 10.1038/s41579-018-0014-3] [Cited by in Crossref: 105] [Cited by in F6Publishing: 87] [Article Influence: 35.0] [Reference Citation Analysis]
180 Wu J, Zhao Y, Wang X, Kong L, Johnston LJ, Lu L, Ma X. Dietary nutrients shape gut microbes and intestinal mucosa via epigenetic modifications. Critical Reviews in Food Science and Nutrition. [DOI: 10.1080/10408398.2020.1828813] [Cited by in Crossref: 10] [Cited by in F6Publishing: 7] [Article Influence: 5.0] [Reference Citation Analysis]
181 Liu L, Wang Q, Lin H, Das R, Wang S, Qi H, Yang J, Xue Y, Mao D, Luo Y. Amoxicillin Increased Functional Pathway Genes and Beta-Lactam Resistance Genes by Pathogens Bloomed in Intestinal Microbiota Using a Simulator of the Human Intestinal Microbial Ecosystem. Front Microbiol 2020;11:1213. [PMID: 32582117 DOI: 10.3389/fmicb.2020.01213] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 2.0] [Reference Citation Analysis]
182 Obermajer T, Pogačić T. Commentary: Relationship between Milk Microbiota, Bacterial Load, Macronutrients, and Human Cells during Lactation. Front Microbiol 2016;7:1281. [PMID: 27581429 DOI: 10.3389/fmicb.2016.01281] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 0.5] [Reference Citation Analysis]
183 Jacobson DK, Honap TP, Ozga AT, Meda N, Kagoné TS, Carabin H, Spicer P, Tito RY, Obregon-Tito AJ, Reyes LM, Troncoso-Corzo L, Guija-Poma E, Sankaranarayanan K, Lewis CM Jr. Analysis of global human gut metagenomes shows that metabolic resilience potential for short-chain fatty acid production is strongly influenced by lifestyle. Sci Rep 2021;11:1724. [PMID: 33462272 DOI: 10.1038/s41598-021-81257-w] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 2.0] [Reference Citation Analysis]
184 Tannock GW. Modulating the Gut Microbiota of Humans by Dietary Intervention with Plant Glycans. Appl Environ Microbiol 2021;87:e02757-20. [PMID: 33355114 DOI: 10.1128/AEM.02757-20] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 4.0] [Reference Citation Analysis]
185 Li J, Liu Y, Kim E, March JC, Bentley WE, Payne GF. Electrochemical reverse engineering: A systems-level tool to probe the redox-based molecular communication of biology. Free Radical Biology and Medicine 2017;105:110-31. [DOI: 10.1016/j.freeradbiomed.2016.12.029] [Cited by in Crossref: 23] [Cited by in F6Publishing: 23] [Article Influence: 4.6] [Reference Citation Analysis]
186 Wen Y, Jin R, Chen H. Interactions Between Gut Microbiota and Acute Childhood Leukemia. Front Microbiol 2019;10:1300. [PMID: 31275258 DOI: 10.3389/fmicb.2019.01300] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 3.3] [Reference Citation Analysis]
187 Wang P, Dong Y, Zuo K, Han C, Jiao J, Yang X, Li J. Characteristics and variation of fecal bacterial communities and functions in isolated systolic and diastolic hypertensive patients. BMC Microbiol 2021;21:128. [PMID: 33902467 DOI: 10.1186/s12866-021-02195-1] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
188 Blakeley-Ruiz JA, Erickson AR, Cantarel BL, Xiong W, Adams R, Jansson JK, Fraser CM, Hettich RL. Metaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes of Crohn's remission patients despite temporal variations in microbial taxa, genomes, and proteomes. Microbiome 2019;7:18. [PMID: 30744677 DOI: 10.1186/s40168-019-0631-8] [Cited by in Crossref: 27] [Cited by in F6Publishing: 21] [Article Influence: 9.0] [Reference Citation Analysis]
189 Rojo D, Méndez-García C, Raczkowska BA, Bargiela R, Moya A, Ferrer M, Barbas C. Exploring the human microbiome from multiple perspectives: factors altering its composition and function. FEMS Microbiol Rev 2017;41:453-78. [PMID: 28333226 DOI: 10.1093/femsre/fuw046] [Cited by in Crossref: 70] [Cited by in F6Publishing: 63] [Article Influence: 14.0] [Reference Citation Analysis]
190 Browne PD, Aparicio M, Alba C, Hechler C, Beijers R, Rodríguez JM, Fernández L, de Weerth C. Human Milk Microbiome and Maternal Postnatal Psychosocial Distress. Front Microbiol 2019;10:2333. [PMID: 31695687 DOI: 10.3389/fmicb.2019.02333] [Cited by in Crossref: 20] [Cited by in F6Publishing: 19] [Article Influence: 6.7] [Reference Citation Analysis]
191 Umu ÖCO, Mydland LT, Øverland M, Press CM, Sørum H. Rapeseed-based diet modulates the imputed functions of gut microbiome in growing-finishing pigs. Sci Rep 2020;10:9372. [PMID: 32523033 DOI: 10.1038/s41598-020-66364-4] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 2.0] [Reference Citation Analysis]
192 Duran-Pinedo A, Solbiati J, Teles F, Teles R, Zang Y, Frias-Lopez J. Long-term dynamics of the human oral microbiome during clinical disease progression. BMC Biol 2021;19:240. [PMID: 34742306 DOI: 10.1186/s12915-021-01169-z] [Reference Citation Analysis]
193 Carthey AJR, Blumstein DT, Gallagher RV, Tetu SG, Gillings MR, Bennett A. Conserving the holobiont. Funct Ecol 2020;34:764-76. [DOI: 10.1111/1365-2435.13504] [Cited by in Crossref: 20] [Cited by in F6Publishing: 1] [Article Influence: 10.0] [Reference Citation Analysis]
194 Tong Q, Cui LY, Bie J, Han XY, Hu ZF, Wang HB, Zhang JT. Changes in the gut microbiota diversity of brown frogs (Rana dybowskii) after an antibiotic bath. BMC Vet Res 2021;17:333. [PMID: 34674716 DOI: 10.1186/s12917-021-03044-z] [Reference Citation Analysis]
195 Zhu J, Dai W, Qiu Q, Dong C, Zhang J, Xiong J. Contrasting Ecological Processes and Functional Compositions Between Intestinal Bacterial Community in Healthy and Diseased Shrimp. Microb Ecol 2016;72:975-85. [PMID: 27538872 DOI: 10.1007/s00248-016-0831-8] [Cited by in Crossref: 80] [Cited by in F6Publishing: 65] [Article Influence: 13.3] [Reference Citation Analysis]
196 Gutiérrez-Repiso C, Moreno-Indias I, Tinahones FJ. Shifts in gut microbiota and their metabolites induced by bariatric surgery. Impact of factors shaping gut microbiota on bariatric surgery outcomes. Rev Endocr Metab Disord 2021. [PMID: 34287758 DOI: 10.1007/s11154-021-09676-8] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
197 García-Bayona L, Comstock LE. Bacterial antagonism in host-associated microbial communities. Science 2018;361:eaat2456. [PMID: 30237322 DOI: 10.1126/science.aat2456] [Cited by in Crossref: 109] [Cited by in F6Publishing: 83] [Article Influence: 27.3] [Reference Citation Analysis]
198 Sánchez-Sánchez P, Santonja FJ, Benítez-Páez A. Assessment of human microbiota stability across longitudinal samples using iteratively growing-partitioned clustering. Brief Bioinform 2022:bbac055. [PMID: 35226073 DOI: 10.1093/bib/bbac055] [Reference Citation Analysis]
199 Tian L, Wang XW, Wu AK, Fan Y, Friedman J, Dahlin A, Waldor MK, Weinstock GM, Weiss ST, Liu YY. Deciphering functional redundancy in the human microbiome. Nat Commun 2020;11:6217. [PMID: 33277504 DOI: 10.1038/s41467-020-19940-1] [Cited by in Crossref: 13] [Cited by in F6Publishing: 14] [Article Influence: 6.5] [Reference Citation Analysis]
200 Chernevskaya E, Beloborodova N, Klimenko N, Pautova A, Shilkin D, Gusarov V, Tyakht A. Serum and fecal profiles of aromatic microbial metabolites reflect gut microbiota disruption in critically ill patients: a prospective observational pilot study. Crit Care 2020;24:312. [PMID: 32513224 DOI: 10.1186/s13054-020-03031-0] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 4.0] [Reference Citation Analysis]
201 Cicala F, Lago-lestón A, Gomez-gil B, Gollas-galván T, Chong-robles J, Cortés-jacinto E, Martínez-porchas M. Gut microbiota shifts in the giant tiger shrimp, Penaeus monodon, during the postlarvae, juvenile, and adult stages. Aquacult Int 2020;28:1421-33. [DOI: 10.1007/s10499-020-00532-1] [Cited by in Crossref: 6] [Article Influence: 3.0] [Reference Citation Analysis]
202 Sultana S, Khan MN, Hossain MS, Dai J, Rahman MS, Salimullah M. Community Structure and Functional Annotations of the Skin Microbiome in Healthy and Diseased Catfish, Heteropneustes fossilis. Front Microbiol 2022;13:856014. [DOI: 10.3389/fmicb.2022.856014] [Reference Citation Analysis]
203 Hu L, Geng S, Li Y, Cheng S, Fu X, Yue X, Han X. Exogenous Fecal Microbiota Transplantation from Local Adult Pigs to Crossbred Newborn Piglets. Front Microbiol 2017;8:2663. [PMID: 29375527 DOI: 10.3389/fmicb.2017.02663] [Cited by in Crossref: 37] [Cited by in F6Publishing: 41] [Article Influence: 9.3] [Reference Citation Analysis]
204 Baumgartner M, Pfrunder-Cardozo KR, Hall AR. Microbial community composition interacts with local abiotic conditions to drive colonization resistance in human gut microbiome samples. Proc Biol Sci 2021;288:20203106. [PMID: 33757361 DOI: 10.1098/rspb.2020.3106] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
205 Ashaolu TJ. Immune boosting functional foods and their mechanisms: A critical evaluation of probiotics and prebiotics. Biomed Pharmacother 2020;130:110625. [PMID: 32795926 DOI: 10.1016/j.biopha.2020.110625] [Cited by in Crossref: 34] [Cited by in F6Publishing: 21] [Article Influence: 17.0] [Reference Citation Analysis]
206 Wipperman MF, Fitzgerald DW, Juste MAJ, Taur Y, Namasivayam S, Sher A, Bean JM, Bucci V, Glickman MS. Antibiotic treatment for Tuberculosis induces a profound dysbiosis of the microbiome that persists long after therapy is completed. Sci Rep 2017;7:10767. [PMID: 28883399 DOI: 10.1038/s41598-017-10346-6] [Cited by in Crossref: 67] [Cited by in F6Publishing: 59] [Article Influence: 13.4] [Reference Citation Analysis]
207 Zhang L, Wu W, Lee YK, Xie J, Zhang H. Spatial Heterogeneity and Co-occurrence of Mucosal and Luminal Microbiome across Swine Intestinal Tract. Front Microbiol 2018;9:48. [PMID: 29472900 DOI: 10.3389/fmicb.2018.00048] [Cited by in Crossref: 62] [Cited by in F6Publishing: 62] [Article Influence: 15.5] [Reference Citation Analysis]
208 Ma T, Villot C, Renaud D, Skidmore A, Chevaux E, Steele M, Guan LL. Linking perturbations to temporal changes in diversity, stability, and compositions of neonatal calf gut microbiota: prediction of diarrhea. ISME J 2020;14:2223-35. [PMID: 32444812 DOI: 10.1038/s41396-020-0678-3] [Cited by in Crossref: 18] [Cited by in F6Publishing: 17] [Article Influence: 9.0] [Reference Citation Analysis]
209 Medina DA, Li T, Thomson P, Artacho A, Pérez-Brocal V, Moya A. Cross-Regional View of Functional and Taxonomic Microbiota Composition in Obesity and Post-obesity Treatment Shows Country Specific Microbial Contribution. Front Microbiol 2019;10:2346. [PMID: 31681211 DOI: 10.3389/fmicb.2019.02346] [Cited by in Crossref: 11] [Cited by in F6Publishing: 9] [Article Influence: 3.7] [Reference Citation Analysis]
210 Clarke G, Sandhu KV, Griffin BT, Dinan TG, Cryan JF, Hyland NP, France CP. Gut Reactions: Breaking Down Xenobiotic–Microbiome Interactions. Pharmacol Rev 2019;71:198-224. [DOI: 10.1124/pr.118.015768] [Cited by in Crossref: 101] [Cited by in F6Publishing: 85] [Article Influence: 33.7] [Reference Citation Analysis]
211 Gagliardi A, Totino V, Cacciotti F, Iebba V, Neroni B, Bonfiglio G, Trancassini M, Passariello C, Pantanella F, Schippa S. Rebuilding the Gut Microbiota Ecosystem. Int J Environ Res Public Health 2018;15:E1679. [PMID: 30087270 DOI: 10.3390/ijerph15081679] [Cited by in Crossref: 91] [Cited by in F6Publishing: 60] [Article Influence: 22.8] [Reference Citation Analysis]
212 Ruiz L, García-Carral C, Rodriguez JM. Unfolding the Human Milk Microbiome Landscape in the Omics Era. Front Microbiol 2019;10:1378. [PMID: 31293535 DOI: 10.3389/fmicb.2019.01378] [Cited by in Crossref: 29] [Cited by in F6Publishing: 24] [Article Influence: 9.7] [Reference Citation Analysis]
213 Lee JG, Lee YR, Lee AR, Park CH, Han DS, Eun CS. Role of the global gut microbial community in the development of colitis-associated cancer in a murine model. Biomed Pharmacother 2021;135:111206. [PMID: 33418307 DOI: 10.1016/j.biopha.2020.111206] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
214 Vital M, Karch A, Pieper DH. Colonic Butyrate-Producing Communities in Humans: an Overview Using Omics Data. mSystems 2017;2:e00130-17. [PMID: 29238752 DOI: 10.1128/mSystems.00130-17] [Cited by in Crossref: 149] [Cited by in F6Publishing: 87] [Article Influence: 29.8] [Reference Citation Analysis]
215 Berding K, Donovan SM. Dietary Patterns Impact Temporal Dynamics of Fecal Microbiota Composition in Children With Autism Spectrum Disorder. Front Nutr 2019;6:193. [PMID: 31998741 DOI: 10.3389/fnut.2019.00193] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 3.0] [Reference Citation Analysis]
216 Majumder R, Sutcliffe B, Adnan SM, Mainali B, Dominiak BC, Taylor PW, Chapman TA. Artificial Larval Diet Mediates the Microbiome of Queensland Fruit Fly. Front Microbiol 2020;11:576156. [PMID: 33042092 DOI: 10.3389/fmicb.2020.576156] [Cited by in Crossref: 3] [Article Influence: 1.5] [Reference Citation Analysis]
217 Anthony WE, Wang B, Sukhum KV, D'Souza AW, Hink T, Cass C, Seiler S, Reske KA, Coon C, Dubberke ER, Burnham CD, Dantas G, Kwon JH. Acute and persistent effects of commonly used antibiotics on the gut microbiome and resistome in healthy adults. Cell Rep 2022;39:110649. [PMID: 35417701 DOI: 10.1016/j.celrep.2022.110649] [Reference Citation Analysis]
218 Dinleyici EC, Martínez-Martínez D, Kara A, Karbuz A, Dalgic N, Metin O, Yazar AS, Guven S, Kurugol Z, Turel O, Kucukkoc M, Yasa O, Eren M, Ozen M, Martí JM, P Garay C, Vandenplas Y, Moya A. Time Series Analysis of the Microbiota of Children Suffering From Acute Infectious Diarrhea and Their Recovery After Treatment. Front Microbiol 2018;9:1230. [PMID: 29946306 DOI: 10.3389/fmicb.2018.01230] [Cited by in Crossref: 14] [Cited by in F6Publishing: 9] [Article Influence: 3.5] [Reference Citation Analysis]