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For: Kumar N, Mishra B, Mehmood A, Mohammad Athar, M Shahid Mukhtar. Integrative Network Biology Framework Elucidates Molecular Mechanisms of SARS-CoV-2 Pathogenesis. iScience 2020;23:101526. [PMID: 32895641 DOI: 10.1016/j.isci.2020.101526] [Cited by in Crossref: 13] [Cited by in F6Publishing: 15] [Article Influence: 6.5] [Reference Citation Analysis]
Number Citing Articles
1 Zhang YH, Li H, Zeng T, Chen L, Li Z, Huang T, Cai YD. Identifying Transcriptomic Signatures and Rules for SARS-CoV-2 Infection. Front Cell Dev Biol 2020;8:627302. [PMID: 33505977 DOI: 10.3389/fcell.2020.627302] [Cited by in Crossref: 12] [Cited by in F6Publishing: 10] [Article Influence: 12.0] [Reference Citation Analysis]
2 Bakovic A, Risner K, Bhalla N, Alem F, Chang TL, Weston WK, Harness JA, Narayanan A. Brilacidin Demonstrates Inhibition of SARS-CoV-2 in Cell Culture. Viruses 2021;13:271. [PMID: 33572467 DOI: 10.3390/v13020271] [Cited by in Crossref: 5] [Cited by in F6Publishing: 6] [Article Influence: 5.0] [Reference Citation Analysis]
3 Mishra B, Kumar N, Mukhtar MS. Network biology to uncover functional and structural properties of the plant immune system. Curr Opin Plant Biol 2021;62:102057. [PMID: 34102601 DOI: 10.1016/j.pbi.2021.102057] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
4 Krämer A, Billaud JN, Tugendreich S, Shiffman D, Jones M, Green J. The Coronavirus Network Explorer: mining a large-scale knowledge graph for effects of SARS-CoV-2 on host cell function. BMC Bioinformatics 2021;22:229. [PMID: 33941085 DOI: 10.1186/s12859-021-04148-x] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
5 Hasankhani A, Bahrami A, Sheybani N, Aria B, Hemati B, Fatehi F, Ghaem Maghami Farahani H, Javanmard G, Rezaee M, Kastelic JP, Barkema HW. Differential Co-Expression Network Analysis Reveals Key Hub-High Traffic Genes as Potential Therapeutic Targets for COVID-19 Pandemic. Front Immunol 2021;12:789317. [PMID: 34975885 DOI: 10.3389/fimmu.2021.789317] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
6 Chandrashekar DS, Athar M, Manne U, Varambally S. Comparative transcriptome analyses reveal genes associated with SARS-CoV-2 infection of human lung epithelial cells. Sci Rep 2021;11:16212. [PMID: 34376762 DOI: 10.1038/s41598-021-95733-w] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
7 Huang CT, Chao TL, Kao HC, Pang YH, Lee WH, Hsieh CH, Chang SY, Huang HC, Juan HF. Enhancement of the IFN-β-induced host signature informs repurposed drugs for COVID-19. Heliyon 2020;6:e05646. [PMID: 33289002 DOI: 10.1016/j.heliyon.2020.e05646] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]
8 Lucchetta M, Pellegrini M. Finding disease modules for cancer and COVID-19 in gene co-expression networks with the Core&Peel method. Sci Rep 2020;10:17628. [PMID: 33077837 DOI: 10.1038/s41598-020-74705-6] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
9 Goujon C, Rebendenne A, Roy P, Bonaventure B, Valadao AC, Desmarets L, Rouillé Y, Tauziet M, Arnaud-Arnould M, Giovannini D, Lee Y, DeWeirdt P, Hegde M, de Gracia FG, McKellar J, Wencker M, Dubuisson J, Belouzard S, Moncorgé O, Doench J. Bidirectional genome-wide CRISPR screens reveal host factors regulating SARS-CoV-2, MERS-CoV and seasonal HCoVs. Res Sq 2021:rs. [PMID: 34075371 DOI: 10.21203/rs.3.rs-555275/v1] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
10 López-Cortés A, Guerrero S, Ortiz-Prado E, Yumiceba V, Vera-Guapi A, León Cáceres Á, Simbaña-Rivera K, Gómez-Jaramillo AM, Echeverría-Garcés G, García-Cárdenas JM, Guevara-Ramírez P, Cabrera-Andrade A, Puig San Andrés L, Cevallos-Robalino D, Bautista J, Armendáriz-Castillo I, Pérez-Villa A, Abad-Sojos A, Ramos-Medina MJ, León-Sosa A, Abarca E, Pérez-Meza ÁA, Nieto-Jaramillo K, Jácome AV, Morillo A, Arias-Erazo F, Fuenmayor-González L, Quiñones LA, Kyriakidis NC. Pulmonary Inflammatory Response in Lethal COVID-19 Reveals Potential Therapeutic Targets and Drugs in Phases III/IV Clinical Trials. Front Pharmacol 2022;13:833174. [PMID: 35422702 DOI: 10.3389/fphar.2022.833174] [Reference Citation Analysis]
11 Mishra B, Kumar N, Liu J, Pajerowska-Mukhtar KM. Dynamic Regulatory Event Mining by iDREM in Large-Scale Multi-omics Datasets During Biotic and Abiotic Stress in Plants. Methods Mol Biol 2021;2328:191-202. [PMID: 34251627 DOI: 10.1007/978-1-0716-1534-8_12] [Reference Citation Analysis]
12 Wang XP, Wen B, Zhang XJ, Ma L, Liang XL, Zhang ML. Transcriptome Analysis of Genes Responding to Infection of Leghorn Male Hepatocellular Cells With Fowl Adenovirus Serotype 4. Front Vet Sci 2022;9:871038. [DOI: 10.3389/fvets.2022.871038] [Reference Citation Analysis]
13 López-Cortés A, Guevara-Ramírez P, Kyriakidis NC, Barba-Ostria C, León Cáceres Á, Guerrero S, Ortiz-Prado E, Munteanu CR, Tejera E, Cevallos-Robalino D, Gómez-Jaramillo AM, Simbaña-Rivera K, Granizo-Martínez A, Pérez-M G, Moreno S, García-Cárdenas JM, Zambrano AK, Pérez-Castillo Y, Cabrera-Andrade A, Puig San Andrés L, Proaño-Castro C, Bautista J, Quevedo A, Varela N, Quiñones LA, Paz-Y-Miño C. In silico Analyses of Immune System Protein Interactome Network, Single-Cell RNA Sequencing of Human Tissues, and Artificial Neural Networks Reveal Potential Therapeutic Targets for Drug Repurposing Against COVID-19. Front Pharmacol 2021;12:598925. [PMID: 33716737 DOI: 10.3389/fphar.2021.598925] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 3.0] [Reference Citation Analysis]
14 Kumar N, Mishra B, Athar M, Mukhtar S. Inference of Gene Regulatory Network from Single-Cell Transcriptomic Data Using pySCENIC. Methods Mol Biol 2021;2328:171-82. [PMID: 34251625 DOI: 10.1007/978-1-0716-1534-8_10] [Reference Citation Analysis]
15 May DG, Martin-Sancho L, Anschau V, Liu S, Chrisopulos RJ, Scott KL, Halfmann CT, Peña RD, Pratt D, Campos AR, Roux KJ. A BioID-derived proximity interactome for SARS-CoV-2 proteins. bioRxiv 2021:2021. [PMID: 34580671 DOI: 10.1101/2021.09.17.460814] [Reference Citation Analysis]
16 Klimenko OV. Perspectives on the Use of Small Noncoding RNAs as a Therapy for Severe Virus-Induced Disease Manifestations and Late Complications. BioNanoSci . [DOI: 10.1007/s12668-022-00977-z] [Reference Citation Analysis]
17 Rebendenne A, Roy P, Bonaventure B, Chaves Valadão AL, Desmarets L, Rouillé Y, Tauziet M, Arnaud-Arnould M, Giovannini D, Lee Y, DeWeirdt P, Hegde M, Garcia de Gracia F, McKellar J, Wencker M, Dubuisson J, Belouzard S, Moncorgé O, Doench JG, Goujon C. Bidirectional genome-wide CRISPR screens reveal host factors regulating SARS-CoV-2, MERS-CoV and seasonal coronaviruses. bioRxiv 2021:2021. [PMID: 34031654 DOI: 10.1101/2021.05.19.444823] [Cited by in Crossref: 3] [Article Influence: 3.0] [Reference Citation Analysis]
18 Guo Y, Esfahani F, Shao X, Srinivasan V, Thomo A, Xing L, Zhang X. Integrative COVID-19 biological network inference with probabilistic core decomposition. Brief Bioinform 2021:bbab455. [PMID: 34791019 DOI: 10.1093/bib/bbab455] [Reference Citation Analysis]
19 Jackson RM, Hatton CF, Spegarova JS, Georgiou M, Collin J, Stephenson E, Verdon B, Haq IJ, Hussain R, Coxhead JM, Mudhar HS, Wagner B, Hasoon M, Davey T, Rooney P, Khan CMA, Ward C, Brodlie M, Haniffa M, Hambleton S, Armstrong L, Figueiredo F, Queen R, Duncan CJA, Lako M. Conjunctival epithelial cells resist productive SARS-CoV-2 infection. Stem Cell Reports 2022:S2213-6711(22)00270-3. [PMID: 35750043 DOI: 10.1016/j.stemcr.2022.05.017] [Reference Citation Analysis]
20 Barabas ME, Chakrabarti R, Muzzio M. One common enemy, a pandemic, uniting interdisciplinary teams. iScience 2021;24:102992. [PMID: 34485871 DOI: 10.1016/j.isci.2021.102992] [Reference Citation Analysis]
21 Gao K, Wang R, Chen J, Cheng L, Frishcosy J, Huzumi Y, Qiu Y, Schluckbier T, Wei X, Wei GW. Methodology-Centered Review of Molecular Modeling, Simulation, and Prediction of SARS-CoV-2. Chem Rev 2022. [PMID: 35594413 DOI: 10.1021/acs.chemrev.1c00965] [Cited by in Crossref: 2] [Article Influence: 2.0] [Reference Citation Analysis]
22 Mishra B, Athar M, Mukhtar MS. Transcriptional circuitry atlas of genetic diverse unstimulated murine and human macrophages define disparity in population-wide innate immunity. Sci Rep 2021;11:7373. [PMID: 33795737 DOI: 10.1038/s41598-021-86742-w] [Reference Citation Analysis]
23 Mishra B, Kumar N, Shahid Mukhtar M. A Rice Protein Interaction Network Reveals High Centrality Nodes and Candidate Pathogen Effector Targets. Computational and Structural Biotechnology Journal 2022. [DOI: 10.1016/j.csbj.2022.04.027] [Reference Citation Analysis]
24 Panditrao G, Bhowmick R, Meena C, Sarkar RR. Emerging landscape of molecular interaction networks: Opportunities, challenges and prospects. J Biosci 2022;47. [DOI: 10.1007/s12038-022-00253-y] [Reference Citation Analysis]
25 May DG, Martin-sancho L, Anschau V, Liu S, Chrisopulos RJ, Scott KL, Halfmann CT, Díaz Peña R, Pratt D, Campos AR, Roux KJ. A BioID-Derived Proximity Interactome for SARS-CoV-2 Proteins. Viruses 2022;14:611. [DOI: 10.3390/v14030611] [Reference Citation Analysis]