BPG is committed to discovery and dissemination of knowledge
Cited by in CrossRef
For: Wang WL, Xu SY, Ren ZG, Tao L, Jiang JW, Zheng SS. Application of metagenomics in the human gut microbiome. World J Gastroenterol 2015; 21(3): 803-814 [PMID: 25624713 DOI: 10.3748/wjg.v21.i3.803]
URL: https://www.wjgnet.com/1948-5182/full/v21/i3/803.htm
Number Citing Articles
1
Maya Raman, Padma Ambalam, Mukesh Doble. Probiotics and Bioactive Carbohydrates in Colon Cancer Management2016; : 15 doi: 10.1007/978-81-322-2586-7_2
2
Yi Wang, Jiabao Xu, Lingchao Kong, Bei Li, Hang Li, Wei E. Huang, Chunmiao Zheng. Raman‐activated sorting of antibiotic‐resistant bacteria in human gut microbiotaEnvironmental Microbiology 2020; 22(7): 2613 doi: 10.1111/1462-2920.14962
3
Uffe Vest Schneider, Nikolaj Dam Mikkelsen, Flemming Scheutz, Alice Friis-Møller, Gorm Lisby, Ruslan Kalendar. Nonaplex PCR using Cliffhanger primers to identify diarrhoeagenic Escherichia coli from crude lysates of human faecal samplesPLOS ONE 2018; 13(6): e0199766 doi: 10.1371/journal.pone.0199766
4
Emilee E. Shine, Jason M. Crawford. Molecules from the MicrobiomeAnnual Review of Biochemistry 2021; 90(1): 789 doi: 10.1146/annurev-biochem-080320-115307
5
Maria Muñoz-Benavent, Felix Hartkopf, Tim Van Den Bossche, Vitor C Piro, Carlos García-Ferris, Amparo Latorre, Bernhard Y Renard, Thilo Muth. gNOMO: a multi-omics pipeline for integrated host and microbiome analysis of non-model organismsNAR Genomics and Bioinformatics 2020; 2(3) doi: 10.1093/nargab/lqaa058
6
Elsa Pinto, Marisol Anselmo, Manuela Calha, Andrew Bottrill, Isabel Duarte, Peter W Andrew, Maria L Faleiro. The intestinal proteome of diabetic and control children is enriched with different microbial and host proteins Microbiology 2017; 163(2): 161 doi: 10.1099/mic.0.000412
7
Lucy J. Mailing, Jacob M. Allen, Thomas W. Buford, Christopher J. Fields, Jeffrey A. Woods. Exercise and the Gut Microbiome: A Review of the Evidence, Potential Mechanisms, and Implications for Human HealthExercise and Sport Sciences Reviews 2019; 47(2): 75 doi: 10.1249/JES.0000000000000183
8
Sara Iqbal, Eamonn M. M. Quigley. Progress in Our Understanding of the Gut Microbiome: Implications for the ClinicianCurrent Gastroenterology Reports 2016; 18(9) doi: 10.1007/s11894-016-0524-y
9
Aitor Blanco-Míguez, Florentino Fdez-Riverola, Borja Sánchez, Anália Lourenço. Resources and tools for the high-throughput, multi-omic study of intestinal microbiotaBriefings in Bioinformatics 2019; 20(3): 1032 doi: 10.1093/bib/bbx156
10
Daniela Braconi, Annalisa Santucci. Comprehensive Foodomics2021; : 558 doi: 10.1016/B978-0-08-100596-5.22898-9
11
Michael S. Johns, Nicholas J. Petrelli. Microbiome and colorectal cancer: A review of the past, present, and futureSurgical Oncology 2021; 37: 101560 doi: 10.1016/j.suronc.2021.101560
12
Dharman Kalaimurugan, Balasubramanian Balamuralikrishnan, Rasiravathanahalli Kaveriyappan Govindarajan, Naif Abdullah Al-Dhabi, Mariadhas Valan Arasu, Chithravel Vadivalagan, Srinivasan Venkatesan, Hesam Kamyab, Shreeshivadasan Chelliapan, Chartchai Khanongnuch. Production and Characterization of a Novel Biosurfactant Molecule from Bacillus safensis YKS2 and Assessment of Its Efficiencies in Wastewater Treatment by a Directed Metagenomic ApproachSustainability 2022; 14(4): 2142 doi: 10.3390/su14042142
13
Panagiotis Agioutantis, Vassiliki Lila Koumandou. Bioenergetic diversity of the human gut microbiomeMeta Gene 2018; 16: 10 doi: 10.1016/j.mgene.2017.12.007
14
D. Rianda, R. Agustina, E.A. Setiawan, N.R.M. Manikam. Effect of probiotic supplementation on cognitive function in children and adolescents: a systematic review of randomised trialsBeneficial Microbes 2019; 10(8): 873 doi: 10.3920/BM2019.0068
15
Nazanin Parhizgar, Mehrnaz Azadyekta, Parynaz Parhizgar. Validity and Reliability Assessments of a 16-item Food Frequency Questionnaire as a Probiotic and Prebiotic Consumption Scale in People Aged 20 to 40 Years in TehranNutrition and Food Sciences Research 2021; 8(2): 35 doi: 10.52547/nfsr.8.2.35
16
Melhem Bilen. Strategies and advancements in human microbiome description and the importance of culturomicsMicrobial Pathogenesis 2020; 149: 104460 doi: 10.1016/j.micpath.2020.104460
17
Yaocheng Cui, Jiancheng Qi, Dongjie Cai, Jing Fang, Yue Xie, Hongrui Guo, Shiyi Chen, Xiaoping Ma, Liping Gou, Hengmin Cui, Yi Geng, Gang Ye, Zhijun Zhong, Zhihua Ren, Yanchun Hu, Ya Wang, Junliang Deng, Shuming Yu, Suizhong Cao, Huawei Zou, Zhisheng Wang, Zhicai Zuo. Metagenomics Reveals That Proper Placement After Long-Distance Transportation Significantly Affects Calf Nasopharyngeal Microbiota and Is Critical for the Prevention of Respiratory DiseasesFrontiers in Microbiology 2021; 12 doi: 10.3389/fmicb.2021.700704
18
Sejeong Kim, Jong-Chan Kim, Sunhyun Park, Jinkwi Kim, Yohan Yoon, Heeyoung Lee. Identification of Microbial Flora in Dry Aged Beef to Evaluate the Rancidity during Dry AgingProcesses 2021; 9(11): 2049 doi: 10.3390/pr9112049
19
Romit Mitra, Lipika Das, Subrata K. Das. Microbial Diversity in Ecosystem Sustainability and Biotechnological Applications2019; : 355 doi: 10.1007/978-981-13-8315-1_12
20
Bin Xue, Kun Dai, Xi Zhang, Shang Wang, Chenyu Li, Chen Zhao, Xiaobo Yang, Zhuge Xi, Zhigang Qiu, Zhiqiang Shen, Jingfeng Wang. Low-concentration of dichloroacetonitrile (DCAN) in drinking water perturbs the health-associated gut microbiome and metabolic profile in ratsChemosphere 2020; 258: 127067 doi: 10.1016/j.chemosphere.2020.127067
21
Elliott D. Crouser, Tasha E. Fingerlin, Ivana V. Yang, Lisa A. Maier, Patrick Nana-Sinkam, Ronald G. Collman, Naftali Kaminski. Application of “Omics” and Systems Biology to Sarcoidosis ResearchAnnals of the American Thoracic Society 2017; 14(Supplement_6): S445 doi: 10.1513/AnnalsATS.201707-567OT
22
Haihua Liu, Huiying Liu, Chang Liu, Mengxue Shang, Tianfu Wei, Peiyuan Yin. Gut Microbiome and the Role of Metabolites in the Study of Graves’ DiseaseFrontiers in Molecular Biosciences 2022; 9 doi: 10.3389/fmolb.2022.841223
23
Ahmed Abdelfattah, Santa O. Cacciola, Saveria Mosca, Rocco Zappia, Leonardo Schena. Analysis of the Fungal Diversity in Citrus Leaves with Greasy Spot Disease SymptomsMicrobial Ecology 2017; 73(3): 739 doi: 10.1007/s00248-016-0874-x
24
Stephen Hayes, Jennifer Mahony, Arjen Nauta, Douwe van Sinderen. Metagenomic Approaches to Assess Bacteriophages in Various Environmental NichesViruses 2017; 9(6): 127 doi: 10.3390/v9060127
25
Jiayu Shang, Yanni Sun. CHEER: HierarCHical taxonomic classification for viral mEtagEnomic data via deep leaRningMethods 2021; 189: 95 doi: 10.1016/j.ymeth.2020.05.018
26
Learn-Han Lee, Sunny Hei Wong, Siok-Fong Chin, Vishal Singh, Nurul-Syakima Ab Mutalib. Editorial: Human Microbiome: Symbiosis to PathogenesisFrontiers in Microbiology 2021; 12 doi: 10.3389/fmicb.2021.605783
27
Jacinta Ryan, Sandra Jones, Peter Hayes, Jeffrey Craig. Leadership Evolution for Planetary Health: A Genomics PerspectiveChallenges 2019; 10(1): 4 doi: 10.3390/challe10010004
28
Weilin Wang, Shaoyan Xu, Zhigang Ren, Jianwen Jiang, Shusen Zheng. Gut microbiota and allogeneic transplantationJournal of Translational Medicine 2015; 13(1) doi: 10.1186/s12967-015-0640-8
29
Anuj Tyagi, Balwinder Singh, Naveen K. Billekallu Thammegowda, Niraj K. Singh. Shotgun metagenomics offers novel insights into taxonomic compositions, metabolic pathways and antibiotic resistance genes in fish gut microbiomeArchives of Microbiology 2019; 201(3): 295 doi: 10.1007/s00203-018-1615-y
30
Ekaterine Gabashvili, Saba Kobakhidze, Stylianos Koulouris, Tobin Robinson, Mamuka Kotetishvili. Bi- and Multi-directional Gene Transfer in the Natural Populations of Polyvalent Bacteriophages, and Their Host Species Spectrum Representing Foodborne Versus Other Human and/or Animal PathogensFood and Environmental Virology 2021; 13(2): 179 doi: 10.1007/s12560-021-09460-6
31
Oladipo Oladiti Olaniyi, Hongzhe Li, Yongguan Zhu, Li Cui. Metabolic responses of indigenous bacteria in chicken faeces and maggots to multiple antibiotics via heavy water labeled single-cell Raman spectroscopyJournal of Environmental Sciences 2022; 113: 394 doi: 10.1016/j.jes.2021.06.024
32
Koji Ando, Qingjiang Hu, Yuta Kasagi, Eiji Oki, Masaki Mori. Recent developments in cancer research: Expectations for a new remedyAnnals of Gastroenterological Surgery 2021; 5(4): 419 doi: 10.1002/ags3.12440
33
Kang Zhou, Nen-Qun Xiao, Zhou-Jin Tan. Intestinal microecological mechanism for Baohe Pill to treat food-stagnation-type gastrointestinal diarrheaWorld Chinese Journal of Digestology 2022; 30(5): 217 doi: 10.11569/wcjd.v30.i5.217
Abstract() |  Core Tip() |  Full Article(HTML)() | Times Cited  (0) | Total Visits (0) | Open
34
Mohammad Al-Balawi, Fatthy Mohamed Morsy. Enterococcus faecalis Is a Better Competitor Than Other Lactic Acid Bacteria in the Initial Colonization of Colon of Healthy Newborn Babies at First Week of Their LifeFrontiers in Microbiology 2020; 11 doi: 10.3389/fmicb.2020.02017
35
Yanping Zheng, Ying Ran, Hongxia Zhang, Bangmao Wang, Lu Zhou. The Microbiome in Autoimmune Liver Diseases: Metagenomic and Metabolomic ChangesFrontiers in Physiology 2021; 12 doi: 10.3389/fphys.2021.715852
36
Lynnette R. Ferguson, Bobbi Laing, Gareth Marlow, Karen Bishop. The role of vitamin D in reducing gastrointestinal disease risk and assessment of individual dietary intake needs: Focus on genetic and genomic technologiesMolecular Nutrition & Food Research 2016; 60(1): 119 doi: 10.1002/mnfr.201500243
37
Shao-Chun Wu, Cheng-Shyuan Rau, Hang-Tsung Liu, Pao-Jen Kuo, Peng-Chen Chien, Ting-Min Hsieh, Ching-Hua Tsai, Jung-Fang Chuang, Chun-Ying Huang, Hsiao-Yun Hsieh, Ching-Hua Hsieh. Metagenome Analysis as a Tool to Study Bacterial Infection Associated with Acute Surgical AbdomenJournal of Clinical Medicine 2018; 7(10): 346 doi: 10.3390/jcm7100346
38
You Zhou, Meishen Ren, Pengfei Zhang, Dike Jiang, Xueping Yao, Yan Luo, Zexiao Yang, Yin Wang. Application of Nanopore Sequencing in the Detection of Foodborne MicroorganismsNanomaterials 2022; 12(9): 1534 doi: 10.3390/nano12091534
39
Namwiinga Ndulo, Rory Peters, Kirsten Macgregor, Mercy Imasiku, Beatrice Amadi, Paul Kelly. Infrequent small bowel intestinal bacterial overgrowth in malnourished Zambian childrenPan African Medical Journal 2020; 35 doi: 10.11604/pamj.2020.35.29.9831
40
Hojat Dehghanbanadaki, Hossein Aazami, Hanieh Sadat Ejtahed, Ahmad Sohrabi, Shahrbanoo Keshavarz Azizi Raftar, Samira Tarashi, Ozra Tabatabaei-Malazy, Golnaz Bahramali, Seyed Davar Siadat, Ensieh Nasli Esfahani, Farideh Razi. The global scientific publications on gut microbiota in type 2 diabetes; a bibliometric, Scientometric, and descriptive analysisJournal of Diabetes & Metabolic Disorders 2021;  doi: 10.1007/s40200-021-00920-1
41
Ning-Ning Liu, Qiang Ma, Yang Ge, Cheng-Xiang Yi, Lu-Qi Wei, Jing-Cong Tan, Qiao Chu, Jing-Quan Li, Peng Zhang, Hui Wang. Microbiome dysbiosis in lung cancer: from composition to therapynpj Precision Oncology 2020; 4(1) doi: 10.1038/s41698-020-00138-z
42
Najla El-Jurdi, Marcos de Lima, Hillard Lazarus, Mahmoud A. Ghannoum. Microbiome: Its Impact Is Being Revealed!Current Clinical Microbiology Reports 2017; 4(2): 78 doi: 10.1007/s40588-017-0063-9
43
Sivadasanpillai Harikrishnan. Diet, the Gut Microbiome and Heart FailureCardiac Failure Review 2019; 5(2): 119 doi: 10.15420/cfr.2018.39.2
44
Nadeem Siddiqui, Potluri Bhavana, Vemuri Sarvani. Impact of Metabolic Regulation in Understanding the Status of Human Health and Diseases: A ReviewInternational Journal of Pharma and Bio Sciences 2022; 12(1): 19 doi: 10.22376/ijpbs/lpr.2022.12.1.L19-31
45
Sasha R. Fehily, Chamara Basnayake, Emily K. Wright, Michael A. Kamm. The gut microbiota and gut diseaseInternal Medicine Journal 2021; 51(10): 1594 doi: 10.1111/imj.15520
46
Lauren S White, Johan Van den Bogaerde, Michael Kamm. The gut microbiota: cause and cure of gut diseasesMedical Journal of Australia 2018; 209(7): 312 doi: 10.5694/mja17.01067
47
Minh Thuy Vi Hoang, Laszlo Irinyi, Yiheng Hu, Benjamin Schwessinger, Wieland Meyer. Long-Reads-Based Metagenomics in Clinical Diagnosis With a Special Focus on Fungal InfectionsFrontiers in Microbiology 2022; 12 doi: 10.3389/fmicb.2021.708550
48
Bei Gao, Liang Chi, Yixin Zhu, Xiaochun Shi, Pengcheng Tu, Bing Li, Jun Yin, Nan Gao, Weishou Shen, Bernd Schnabl. An Introduction to Next Generation Sequencing Bioinformatic Analysis in Gut Microbiome StudiesBiomolecules 2021; 11(4): 530 doi: 10.3390/biom11040530
49
Emidio SCARPELLINI, Martina BASILICO, Emanuele RINNINELLA, Florencia CARBONE, Jolien SCHOL, Carlo RASETTI, Ludovico ABENAVOLI, Pierangelo SANTORI. Probiotics and gut healthMinerva Gastroenterology 2022; 67(4) doi: 10.23736/S2724-5985.21.02910-7
50
Lorena Ruiz, Claudio Hidalgo, Aitor Blanco-Míguez, Anália Lourenço, Borja Sánchez, Abelardo Margolles. Tackling probiotic and gut microbiota functionality through proteomicsJournal of Proteomics 2016; 147: 28 doi: 10.1016/j.jprot.2016.03.023
51
Raquel Ortigão, Pedro Pimentel-Nunes, Mário Dinis-Ribeiro, Diogo Libânio. Gastrointestinal Microbiome – What We Need to Know in Clinical PracticeGE - Portuguese Journal of Gastroenterology 2020; 27(5): 336 doi: 10.1159/000505036
52
Maria Gavriilaki, Ioanna Sakellari, Achilles Anagnostopoulos, Eleni Gavriilaki. The Impact of Antibiotic-Mediated Modification of the Intestinal Microbiome on Outcomes of Allogeneic Hematopoietic Cell Transplantation: Systematic Review and Meta-AnalysisBiology of Blood and Marrow Transplantation 2020; 26(9): 1738 doi: 10.1016/j.bbmt.2020.05.011
53
Shuai Zhuang, Yuqing Tan, Hui Hong, Dapeng Li, Longteng Zhang, Yongkang Luo. Exploration of the roles of spoilage bacteria in degrading grass carp proteins during chilled storage: A combined metagenomic and metabolomic approachFood Research International 2022; 152: 110926 doi: 10.1016/j.foodres.2021.110926
54
H. L. Simpson, B. J. Campbell. Review article: dietary fibre-microbiota interactionsAlimentary Pharmacology & Therapeutics 2015; 42(2): 158 doi: 10.1111/apt.13248
55
Mubanga Hellen Kabwe, Surendra Vikram, Khodani Mulaudzi, Janet K. Jansson, Thulani P. Makhalanyane. The gut mycobiota of rural and urban individuals is shaped by geographyBMC Microbiology 2020; 20(1) doi: 10.1186/s12866-020-01907-3
56
Xin Zhang, Shubhagata Das, Sherry Dunbar, Yi-Wei Tang. Advances in Clinical Chemistry 2020; 99: 49 doi: 10.1016/bs.acc.2020.02.007
57
Feng Chen, Qi Wen, Jun Jiang, Hai-Long Li, Yin-Feng Tan, Yong-Hui Li, Nian-Kai Zeng. Could the gut microbiota reconcile the oral bioavailability conundrum of traditional herbs?Journal of Ethnopharmacology 2016; 179: 253 doi: 10.1016/j.jep.2015.12.031
58
Yan Ni, Gang Yu, Huan Chen, Yongqiong Deng, Philippa M Wells, Claire J Steves, Feng Ju, Junfen Fu, Jinbo Xu. M2IA: a web server for microbiome and metabolome integrative analysisBioinformatics 2020; 36(11): 3493 doi: 10.1093/bioinformatics/btaa188
59
丹 李. Research Progress on the Relationship between Biliary Calculi, Tumor and MicroorganismAdvances in Clinical Medicine 2021; 11(03): 912 doi: 10.12677/ACM.2021.113131
60
Radu Tudor Ciornei, Claudiu Cobuz, Silvia Filipiuc, Elisa Albu, Mihai Covasa. Evaluation of Metabolic Syndrome in Type-2 Diabetes Mellitus and the Role of Gut Microbiota: the microDIAB Study2019 E-Health and Bioengineering Conference (EHB) 2019; : 1 doi: 10.1109/EHB47216.2019.8969991
61
Jiancheng Qi, Dongjie Cai, Yaocheng Cui, Tianyu Tan, Huawei Zou, Wei Guo, Yue Xie, Hongrui Guo, Shi-Yi Chen, Xiaoping Ma, Liping Gou, Hengmin Cui, Yi Geng, Ming Zhang, Gang Ye, Zhijun Zhong, Zhihua Ren, Yanchun Hu, Ya Wang, Junliang Deng, Shumin YU, Suizhong Cao, Metha Wanapat, Jing Fang, Zhisheng Wang, Zhicai Zuo. Metagenomics Reveals That Intravenous Injection of Beta-Hydroxybutyric Acid (BHBA) Disturbs the Nasopharynx Microflora and Increases the Risk of Respiratory DiseasesFrontiers in Microbiology 2021; 11 doi: 10.3389/fmicb.2020.630280
62
Gamaliel López-Leal, Fernanda Cornejo-Granados, Juan Manuel Hurtado-Ramírez, Alfredo Mendoza-Vargas, Adrian Ochoa-Leyva. Functional and taxonomic classification of a greenhouse water drain metagenomeStandards in Genomic Sciences 2018; 13(1) doi: 10.1186/s40793-018-0326-y
63
Srinivasan Mahalingam, Dhanasekaran Dharumadurai, Govindaraju Archunan. Vaginal microbiome analysis of buffalo (Bubalus bubalis) during estrous cycle using high-throughput amplicon sequence of 16S rRNA geneSymbiosis 2019; 78(1): 97 doi: 10.1007/s13199-018-00595-y
64
Veronica Moskovicz, Adi Gross, Boaz Mizrahi. Extrinsic Factors Shaping the Skin MicrobiomeMicroorganisms 2020; 8(7): 1023 doi: 10.3390/microorganisms8071023
65
Marie Binvignat, Harry Sokol, Encarnita Mariotti-Ferrandiz, Francis Berenbaum, Jérémie Sellam. Arthrose et microbiote intestinalRevue du Rhumatisme Monographies 2021; 88(2): 92 doi: 10.1016/j.monrhu.2021.02.001
66
Soumya Chatterjee, Sibnarayan Datta, Dharmendra K. Gupta. Arsenic Contamination in the Environment2017; : 37 doi: 10.1007/978-3-319-54356-7_3
67
Basit Yousuf, Avinash Mishra. Microbial Diversity in the Genomic Era2019; : 519 doi: 10.1016/B978-0-12-814849-5.00029-0
68
Amedeo Minichino, Matthew A. Jackson, Marta Francesconi, Claire J. Steves, Cristina Menni, Philip W. J. Burnet, Belinda R. Lennox. Endocannabinoid system mediates the association between gut-microbial diversity and anhedonia/amotivation in a general population cohortMolecular Psychiatry 2021; 26(11): 6269 doi: 10.1038/s41380-021-01147-5
69
Pavol Fülöp, Marianna Dvorožňáková, Marianna Vachalcová, Zuzana Fülöpová, Katarína Šoltys, Gabriel Valočik. Gut microbiome in heart failure and aortic stenosisVnitřní lékařství 2022; 68(2): E04 doi: 10.36290/vnl.2022.026
70
Joseph Krystel, Qingchun Shi, Jefferson Shaw, Goutam Gupta, David Hall, Ed Stover. An in vitro protocol for rapidly assessing the effects of antimicrobial compounds on the unculturable bacterial plant pathogen, Candidatus Liberibacter asiaticusPlant Methods 2019; 15(1) doi: 10.1186/s13007-019-0465-1
71
Sandeep Appunni, Muni Rubens, Venkataraghavan Ramamoorthy, Raees Tonse, Anshul Saxena, Peter McGranaghan, Adeel Kaiser, Rupesh Kotecha. Emerging Evidence on the Effects of Dietary Factors on the Gut Microbiome in Colorectal CancerFrontiers in Nutrition 2021; 8 doi: 10.3389/fnut.2021.718389
72
Pey Yee Lee, Siok-Fong Chin, Hui-min Neoh, Rahman Jamal. Metaproteomic analysis of human gut microbiota: where are we heading?Journal of Biomedical Science 2017; 24(1) doi: 10.1186/s12929-017-0342-z
73
B. C. Guard, J. S. Suchodolski. HORSE SPECIES SYMPOSIUM: Canine intestinal microbiology and metagenomics: From phylogeny to function1Journal of Animal Science 2016; 94(6): 2247 doi: 10.2527/jas.2015-0029
74
Tao Hong, Rui Wang, Xiaoqi Wang, Shijie Yang, Weihao Wang, Qiangguo Gao, Xi Zhang. Interplay Between the Intestinal Microbiota and Acute Graft-Versus-Host Disease: Experimental Evidence and Clinical SignificanceFrontiers in Immunology 2021; 12 doi: 10.3389/fimmu.2021.644982
75
Yaxin Pei, Zhengsheng Yu, Jing Ji, Aman Khan, Xiangkai Li. Microbial Community Structure and Function Indicate the Severity of Chromium Contamination of the Yellow RiverFrontiers in Microbiology 2018; 9 doi: 10.3389/fmicb.2018.00038
76
Ian Rowland, Glenn Gibson, Almut Heinken, Karen Scott, Jonathan Swann, Ines Thiele, Kieran Tuohy. Gut microbiota functions: metabolism of nutrients and other food componentsEuropean Journal of Nutrition 2018; 57(1): 1 doi: 10.1007/s00394-017-1445-8
77
Santosh Lamichhane, Partho Sen, Alex M. Dickens, Matej Orešič, Hanne Christine Bertram. Gut metabolome meets microbiome: A methodological perspective to understand the relationship between host and microbeMethods 2018; 149: 3 doi: 10.1016/j.ymeth.2018.04.029
78
Xinyao Tian, Zhe Yang, Fangzhou Luo, Shusen Zheng. Gut microbial balance and liver transplantation: alteration, management, and predictionFrontiers of Medicine 2018; 12(2): 123 doi: 10.1007/s11684-017-0563-2
79
Lindsay M. Hopson, Stephanie S. Singleton, John A. David, Atin Basuchoudhary, Stefanie Prast-Nielsen, Pavel Klein, Sabyasachi Sen, Raja Mazumder. The MicrobiomeProgress in Molecular Biology and Translational Science 2020; 176: 141 doi: 10.1016/bs.pmbts.2020.08.011
80
Benjamin C. Fu, Timothy W. Randolph, Unhee Lim, Kristine R. Monroe, Iona Cheng, Lynne R. Wilkens, Loïc Le Marchand, Meredith A.J. Hullar, Johanna W. Lampe. Characterization of the gut microbiome in epidemiologic studies: the multiethnic cohort experienceAnnals of Epidemiology 2016; 26(5): 373 doi: 10.1016/j.annepidem.2016.02.009
81
Jose Antonio Garrido-Cardenas, Francisco Manzano-Agugliaro. The metagenomics worldwide researchCurrent Genetics 2017; 63(5): 819 doi: 10.1007/s00294-017-0693-8
82
Marjorie F. Oleksiak, Om P. Rajora. Population Genomics: Marine OrganismsPopulation Genomics 2019; : 3 doi: 10.1007/13836_2019_70
83
Nicholas D. Youngblut, Jacobo de la Cuesta-Zuluaga, Georg H. Reischer, Silke Dauser, Nathalie Schuster, Chris Walzer, Gabrielle Stalder, Andreas H. Farnleitner, Ruth E. Ley, Jack A. Gilbert. Large-Scale Metagenome Assembly Reveals Novel Animal-Associated Microbial Genomes, Biosynthetic Gene Clusters, and Other Genetic DiversitymSystems 2020; 5(6) doi: 10.1128/mSystems.01045-20
84
J. Schulberg, P. De Cruz. Characterisation and therapeutic manipulation of the gut microbiome in inflammatory bowel diseaseInternal Medicine Journal 2016; 46(3): 266 doi: 10.1111/imj.13003
85
Gherman Uritskiy, Jocelyne DiRuggiero. Applying Genome-Resolved Metagenomics to Deconvolute the Halophilic MicrobiomeGenes 2019; 10(3): 220 doi: 10.3390/genes10030220
86
Jose Antonio Garrido-Cardenas, María Inmaculada Polo-López, Isabel Oller-Alberola. Advanced microbial analysis for wastewater quality monitoring: metagenomics trendApplied Microbiology and Biotechnology 2017; 101(20): 7445 doi: 10.1007/s00253-017-8490-3
87
Anna Chizhayeva, Yelena Oleinikova, Margarita Saubenova, Amankeldy Sadanov, Alma Amangeldi, Aida Aitzhanova, Aigul Alybaeva, Makpal Yelubaeva. Impact of probiotics and their metabolites in enhancement the functional properties of whey-based beveragesAIMS Agriculture and Food 2020; 5(3): 521 doi: 10.3934/agrfood.2020.3.521
88
Christine Anyansi, Timothy J. Straub, Abigail L. Manson, Ashlee M. Earl, Thomas Abeel. Computational Methods for Strain-Level Microbial Detection in Colony and Metagenome Sequencing DataFrontiers in Microbiology 2020; 11 doi: 10.3389/fmicb.2020.01925
89
Shanshan Yu, Yangyang Xiong, Yangyang Fu, Guorong Chen, Huadong Zhu, Xun Mo, Dong Wu, Jun Xu. Shotgun metagenomics reveals significant gut microbiome features in different grades of acute pancreatitisMicrobial Pathogenesis 2021; 154: 104849 doi: 10.1016/j.micpath.2021.104849
90
Vartika Bisht, Animesh Acharjee, Georgios V. Gkoutos. NFnetFu: A novel workflow for microbiome data fusionComputers in Biology and Medicine 2021; 135: 104556 doi: 10.1016/j.compbiomed.2021.104556
91
Peter E. Larsen, Yang Dai. Metabolome of human gut microbiome is predictive of host dysbiosisGigaScience 2015; 4(1) doi: 10.1186/s13742-015-0084-3
92
Humphrey A. Mabwi, Eunjung Kim, Dae-Geun Song, Hyo Shin Yoon, Cheol-Ho Pan, Erick.V.G. Komba, GwangPyo Ko, Kwang Hyun Cha. Synthetic gut microbiome: Advances and challengesComputational and Structural Biotechnology Journal 2021; 19: 363 doi: 10.1016/j.csbj.2020.12.029
93
Elizabeth G. Phimister, Susan V. Lynch, Oluf Pedersen. The Human Intestinal Microbiome in Health and DiseaseNew England Journal of Medicine 2016; 375(24): 2369 doi: 10.1056/NEJMra1600266
94
Sven-Bastiaan Haange, Nico Jehmlich. Proteomic interrogation of the gut microbiota: potential clinical impactExpert Review of Proteomics 2016; 13(6): 535 doi: 10.1080/14789450.2016.1190652
95
Atif Khurshid Wani, Priyanka Roy, Vijay Kumar, Tahir ul Gani Mir. Metagenomics and artificial intelligence in the context of human healthInfection, Genetics and Evolution 2022; 100: 105267 doi: 10.1016/j.meegid.2022.105267
96
Patrick Coit, Amr H. Sawalha. The human microbiome in rheumatic autoimmune diseases: A comprehensive reviewClinical Immunology 2016; 170: 70 doi: 10.1016/j.clim.2016.07.026
97
Ravindra Pal Singh, Ramesh Kothari, Suhelen Egan. Systems Biology of Marine Ecosystems2017; : 301 doi: 10.1007/978-3-319-62094-7_15
98
Eamonn M. M. Quigley. Microbiota-Brain-Gut Axis and Neurodegenerative DiseasesCurrent Neurology and Neuroscience Reports 2017; 17(12) doi: 10.1007/s11910-017-0802-6
99
Malathi Srinivasan. Metagenomic Systems Biology2020; : 185 doi: 10.1007/978-981-15-8562-3_9
100
Jeannette S. Messer, Eugene B. Chang. Physiology of the Gastrointestinal Tract2018; : 795 doi: 10.1016/B978-0-12-809954-4.00036-0
101
Dirk K. Wissenbach, Kaitlyn Oliphant, Ulrike Rolle-Kampczyk, Sandi Yen, Henrike Höke, Sven Baumann, Sven B. Haange, Elena F. Verdu, Emma Allen-Vercoe, Martin von Bergen. Optimization of metabolomics of defined in vitro gut microbial ecosystemsInternational Journal of Medical Microbiology 2016; 306(5): 280 doi: 10.1016/j.ijmm.2016.03.007
102
Reuben Maghembe, Donath Damian, Abdalah Makaranga, Stephen Samwel Nyandoro, Sylvester Leonard Lyantagaye, Souvik Kusari, Rajni Hatti-Kaul. Omics for Bioprospecting and Drug Discovery from Bacteria and MicroalgaeAntibiotics 2020; 9(5): 229 doi: 10.3390/antibiotics9050229
103
Jun-Ke Wang, Shu-Kun Yao, Duygu Ağagündüz. Roles of Gut Microbiota and Metabolites in Pathogenesis of Functional ConstipationEvidence-Based Complementary and Alternative Medicine 2021; 2021: 1 doi: 10.1155/2021/5560310
104
Fatima Shahid, Tahreem Zaheer, Hayeqa Shahwar Awan, Maaz Waseem, Amina Basheer, Amjad Ali. Biotechnology in Healthcare, Volume 12022; : 227 doi: 10.1016/B978-0-323-89837-9.00009-7
105
Ting Jia, Sufen Zhao, Katrina Knott, Xiaoguang Li, Yan Liu, Ying Li, Yuefei Chen, Minghai Yang, Yanping Lu, Junyi Wu, Chenglin Zhang. The gastrointestinal tract microbiota of northern white-cheeked gibbons (Nomascus leucogenys) varies with age and captive conditionScientific Reports 2018; 8(1) doi: 10.1038/s41598-018-21117-2
106
Elisabeth Meedt, Andreas Hiergeist, André Gessner, Katja Dettmer, Gerhard Liebisch, Sakhila Ghimire, Hendrik Poeck, Matthias Edinger, Daniel Wolff, Wolfgang Herr, Ernst Holler, Daniela Weber. Prolonged Suppression of Butyrate-Producing Bacteria Is Associated With Acute Gastrointestinal Graft-vs-Host Disease and Transplantation-Related Mortality After Allogeneic Stem Cell TransplantationClinical Infectious Diseases 2022; 74(4): 614 doi: 10.1093/cid/ciab500
107
Omid Jazayeri, S. Mojtaba Daghighi, Farhad Rezaee. Lifestyle alters GUT-bacteria function: Linking immune response and hostBest Practice & Research Clinical Gastroenterology 2017; 31(6): 625 doi: 10.1016/j.bpg.2017.09.009
108
Seth J. Rotz, Christopher E. Dandoy. The microbiome in pediatric oncologyCancer 2020; 126(16): 3629 doi: 10.1002/cncr.33030
109
Madangchanok Imchen, Ranjith Kumavath. Metagenomics for Gut Microbes2018;  doi: 10.5772/intechopen.76214
110
Gherman V. Uritskiy, Jocelyne DiRuggiero, James Taylor. MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysisMicrobiome 2018; 6(1) doi: 10.1186/s40168-018-0541-1
111
Yorick Janssens, Antoon Bronselaer, Evelien Wynendaele, Guy De Tré, Bart De Spiegeleer. Systems Medicine2021; : 468 doi: 10.1016/B978-0-12-801238-3.11526-0
112
A Zulian, R Cancello, E Cesana, E Rizzi, C Consolandi, M Severgnini, V Panizzo, A M Di Blasio, G Micheletto, C Invitti. Adipose tissue microbiota in humans: an open issueInternational Journal of Obesity 2016; 40(11): 1643 doi: 10.1038/ijo.2016.111
113
Benedikt von Bronk, Alexandra Götz, Madeleine Opitz. Complex microbial systems across different levels of descriptionPhysical Biology 2018; 15(5): 051002 doi: 10.1088/1478-3975/aac473
114
Alba Cortés, Laura E. Peachey, Timothy P. Jenkins, Riccardo Scotti, Cinzia Cantacessi. Helminths and microbes within the vertebrate gut – not all studies are created equalParasitology 2019; 146(11): 1371 doi: 10.1017/S003118201900088X
115
Ashton Harper, Malwina Naghibi, Davinder Garcha. The Role of Bacteria, Probiotics and Diet in Irritable Bowel SyndromeFoods 2018; 7(2): 13 doi: 10.3390/foods7020013
116
Full Issue PDFPhytobiomes Journal 2020; 4(1): 1 doi: 10.1094/PBIOMES-4-1
117
Bettina Glasl, Nicole S. Webster, David G. Bourne. Microbial indicators as a diagnostic tool for assessing water quality and climate stress in coral reef ecosystemsMarine Biology 2017; 164(4) doi: 10.1007/s00227-017-3097-x
118
Masayuki Takahashi, Yasuko Kita, Akihiro Mizuno, Nami Goto-Yamamoto. Evaluation of method bias for determining bacterial populations in bacterial community analysesJournal of Bioscience and Bioengineering 2017; 124(4): 476 doi: 10.1016/j.jbiosc.2017.05.007
119
Navid Adnani, Scott R. Rajski, Tim S. Bugni. Symbiosis-inspired approaches to antibiotic discoveryNatural Product Reports 2017; 34(7): 784 doi: 10.1039/C7NP00009J
120
Joanna W. Szopinska, Raphaële Gresse, Saskia van der Marel, Jos Boekhorst, Sabina Lukovac, Iris van Swam, Barbara Franke, Harro Timmerman, Clara Belzer, Alejandro Arias Vasquez. Reliability of a participant-friendly fecal collection method for microbiome analyses: a step towards large sample size investigationBMC Microbiology 2018; 18(1) doi: 10.1186/s12866-018-1249-x
121
Fiona J. Whelan, Barbara Waddell, Saad A. Syed, Shahrokh Shekarriz, Harvey R. Rabin, Michael D. Parkins, Michael G. Surette. Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiotaNature Microbiology 2020; 5(2): 379 doi: 10.1038/s41564-019-0643-y
122
Anindita Mitra, Soumya Chatterjee, Dharmendra K. Gupta. Arsenic Water Resources ContaminationAdvances in Water Security 2020; : 103 doi: 10.1007/978-3-030-21258-2_5
123
Timo A. Thumann, Eva-Maria Pferschy-Wenzig, Christine Moissl-Eichinger, Rudolf Bauer. The role of gut microbiota for the activity of medicinal plants traditionally used in the European Union for gastrointestinal disordersJournal of Ethnopharmacology 2019; 245: 112153 doi: 10.1016/j.jep.2019.112153
124
Estela Salagre, Eduard Vieta, Iria Grande. El cerebro visceral: trastorno bipolar y microbiotaRevista de Psiquiatría y Salud Mental 2017; 10(2): 67 doi: 10.1016/j.rpsm.2017.02.001
125
Sama Rezasoltani, Dorrieh Ahmadi Bashirzadeh, Ehsan Nazemalhosseini Mojarad, Hamid Asadzadeh Aghdaei, Mohsen Norouzinia, Shabnam Shahrokh. Signature of Gut Microbiome by Conventional and Advanced Analysis Techniques: Advantages and DisadvantagesMiddle East Journal of Digestive Diseases 2019; 12(1): 5 doi: 10.15171/mejdd.2020.157
126
Utkarsh Sood, Vipin Gupta, Roshan Kumar, Sukanya Lal, Derek Fawcett, Supriya Rattan, Gerrard Eddy Jai Poinern, Rup Lal. Chicken Gut Microbiome and Human Health: Past Scenarios, Current Perspectives, and Futuristic ApplicationsIndian Journal of Microbiology 2020; 60(1): 2 doi: 10.1007/s12088-019-00785-2
127
Liang-Jen Wang, Chia-Yu Yang, Wen-Jiun Chou, Min-Jing Lee, Miao-Chun Chou, Ho-Chang Kuo, Yuan-Ming Yeh, Sheng-Yu Lee, Lien-Hung Huang, Sung-Chou Li. Gut microbiota and dietary patterns in children with attention-deficit/hyperactivity disorderEuropean Child & Adolescent Psychiatry 2020; 29(3): 287 doi: 10.1007/s00787-019-01352-2
128
Prasoon Kumar, Rajeshwari Sinha, Pratyoosh Shukla. Artificial intelligence and synthetic biology approaches for human gut microbiomeCritical Reviews in Food Science and Nutrition 2022; 62(8): 2103 doi: 10.1080/10408398.2020.1850415
129
S. S. Al-Shehri, E. L. Sweeney, D. M. Cowley, H. G. Liley, P. D. Ranasinghe, B. G. Charles, P. N. Shaw, D. Vagenas, J. A. Duley, C. L. Knox. Deep sequencing of the 16S ribosomal RNA of the neonatal oral microbiome: a comparison of breast-fed and formula-fed infantsScientific Reports 2016; 6(1) doi: 10.1038/srep38309
130
Goutam Chowdhury, T. Ramamurthy. Antimicrobial Resistance2020; : 53 doi: 10.1007/978-981-15-3658-8_3
131
Quang Vo Nguyen, Li Chuin Chong, Yan-Yan Hor, Lee-Ching Lew, Irfan A. Rather, Sy-Bing Choi. Role of Probiotics in the Management of COVID-19: A Computational PerspectiveNutrients 2022; 14(2): 274 doi: 10.3390/nu14020274
132
Maya Raman, Padma Ambalam, Mukesh Doble. Probiotics and Bioactive Carbohydrates in Colon Cancer Management2016; : 1 doi: 10.1007/978-81-322-2586-7_1
133
Nur Syafika Mohd-Yusof, Muhammad Abu Bakar Abdul-Latiff, Abd Rahman Mohd-Ridwan, Aqilah Sakinah Badrulisham, Nursyuhada Othman, Salmah Yaakop, Shukor Md-Nor, Badrul Munir Md-Zain. First report on metabarcoding analysis of gut microbiome in Island Flying Fox (Pteropus hypomelanus) in island populations of MalaysiaBiodiversity Data Journal 2022; 10 doi: 10.3897/BDJ.10.e69631
134
Ashfaque Hossain, Godfred Menezes, Mohammad Al, Ibraheem Ashankyty. Food Toxicology2016; : 491 doi: 10.1201/9781315371443-25
135
Ciara M. O’Donovan, Orla O’Sullivan, Paul D. Cotter. Comprehensive Biotechnology2018; : 629 doi: 10.1016/B978-0-12-809633-8.09233-5
136
H. Astudillo-de la Vega, O. Alonso-Luna, J. Ali-Pérez, C. López-Camarillo, E. Ruiz-Garcia. Translational Research and Onco-Omics Applications in the Era of Cancer Personal GenomicsAdvances in Experimental Medicine and Biology 2019; 1168: 147 doi: 10.1007/978-3-030-24100-1_10
137
Florian Plaza Oñate, Emmanuelle Le Chatelier, Mathieu Almeida, Alessandra C L Cervino, Franck Gauthier, Frédéric Magoulès, S Dusko Ehrlich, Matthieu Pichaud, Jonathan Wren. MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic dataBioinformatics 2019; 35(9): 1544 doi: 10.1093/bioinformatics/bty830
138
Ted George O Achufusi, Anuj Sharma, Ernesto A Zamora, Divey Manocha. Small Intestinal Bacterial Overgrowth: Comprehensive Review of Diagnosis, Prevention, and Treatment MethodsCureus 2020;  doi: 10.7759/cureus.8860
139
Gelio Alves, Guanghui Wang, Aleksey Y. Ogurtsov, Steven K. Drake, Marjan Gucek, David B. Sacks, Yi-Kuo Yu. Rapid Classification and Identification of Multiple Microorganisms with Accurate Statistical Significance via High-Resolution Tandem Mass SpectrometryJournal of the American Society for Mass Spectrometry 2018; 29(8): 1721 doi: 10.1007/s13361-018-1986-y
140
Tasha M. Santiago-Rodriguez, Raul Cano, Rafael Jiménez-Flores. Potential applications of metagenomics to assess the biological effects of food structure and functionFood & Function 2016; 7(10): 4160 doi: 10.1039/C6FO00317F
141
Pilar Calo-Mata, Jose Manuel Ageitos, Karola Böhme, Jorge Barros-Velázquez. New Weapons to Control Bacterial Growth2016; : 281 doi: 10.1007/978-3-319-28368-5_12
142
Matthias Willmann, Silke Peter. Translational metagenomics and the human resistome: confronting the menace of the new millenniumJournal of Molecular Medicine 2017; 95(1): 41 doi: 10.1007/s00109-016-1478-0
143
Ting-Chin David Shen, Nikolaos Pyrsopoulos, Vinod K. Rustgi. Microbiota and the liverLiver Transplantation 2018; 24(4): 539 doi: 10.1002/lt.25008
144
Marines du Teil Espina, Giorgio Gabarrini, Hermie J M Harmsen, Johanna Westra, Arie Jan van Winkelhoff, Jan Maarten van Dijl. Talk to your gut: the oral-gut microbiome axis and its immunomodulatory role in the etiology of rheumatoid arthritisFEMS Microbiology Reviews 2019; 43(1): 1 doi: 10.1093/femsre/fuy035
145
Caterina Foppa, Siew Chien Ng, Marco Montorsi, Antonino Spinelli. Anastomotic leak in colorectal cancer patients: New insights and perspectivesEuropean Journal of Surgical Oncology 2020; 46(6): 943 doi: 10.1016/j.ejso.2020.02.027
146
Rajpal Srivastav, Garima Suneja. Microbial Genomics in Sustainable Agroecosystems2019; : 131 doi: 10.1007/978-981-32-9860-6_8
147
Natalia Molinero, Carlos Sabater, Inés Calvete, Susana Delgado, Patricia Ruas-Madiedo, Lorena Ruiz, Abelardo Margolles. Comprehensive Gut Microbiota2022; : 84 doi: 10.1016/B978-0-12-819265-8.00095-4
148
Yorick Janssens, Joachim Nielandt, Antoon Bronselaer, Nathan Debunne, Frederick Verbeke, Evelien Wynendaele, Filip Van Immerseel, Yves-Paul Vandewynckel, Guy De Tré, Bart De Spiegeleer. Disbiome database: linking the microbiome to diseaseBMC Microbiology 2018; 18(1) doi: 10.1186/s12866-018-1197-5
149
Borja Sánchez, Susana Delgado, Aitor Blanco-Míguez, Anália Lourenço, Miguel Gueimonde, Abelardo Margolles. Probiotics, gut microbiota, and their influence on host health and diseaseMolecular Nutrition & Food Research 2017; 61(1): 1600240 doi: 10.1002/mnfr.201600240
150
Petar Tonkovic, Slobodan Kalajdziski, Eftim Zdravevski, Petre Lameski, Roberto Corizzo, Ivan Miguel Pires, Nuno M. Garcia, Tatjana Loncar-Turukalo, Vladimir Trajkovik. Literature on Applied Machine Learning in Metagenomic Classification: A Scoping ReviewBiology 2020; 9(12): 453 doi: 10.3390/biology9120453
151
Ian F. Akyildiz, Jiande Chen, Maysam Ghovanloo, Ulkuhan Guler, Tevhide Ozkaya-Ahmadov, Massimiliano Pierobon, A. Fatih Sarioglu, Bige D. Unluturk. Microbiome-Gut-Brain Axis as a Biomolecular Communication Network for the Internet of Bio-NanoThingsIEEE Access 2019; 7: 136161 doi: 10.1109/ACCESS.2019.2942312
152
Xiao-wei Feng, Wen-ping Ding, Ling-yun Xiong, Liang Guo, Jia-ming Sun, Peng Xiao. Recent Advancements in Intestinal Microbiota Analyses: A Review for Non-MicrobiologistsCurrent Medical Science 2018; 38(6): 949 doi: 10.1007/s11596-018-1969-z
153
Farah Shahi, Kelly Redeker, James Chong. Rethinking antimicrobial stewardship paradigms in the context of the gut microbiomeJAC-Antimicrobial Resistance 2019; 1(1) doi: 10.1093/jacamr/dlz015
154
Shuming Mo, Jinhui Li, Bin Li, Muhammad Kashif, Shiqing Nie, Jianping Liao, Guijiao Su, Qiong Jiang, Bing Yan, Chengjian Jiang. L-Cysteine Synthase Enhanced Sulfide Biotransformation in Subtropical Marine Mangrove Sediments as Revealed by Metagenomics AnalysisWater 2021; 13(21): 3053 doi: 10.3390/w13213053
155
S. I. Sitkin, T. Ya. Vakhitov, E. V. Demyanova. Microbiome, gut dysbiosis and inflammatory bowel disease: That moment when the function is more important than taxonomyAlmanac of Clinical Medicine 2018; 46(5): 396 doi: 10.18786/2072-0505-2018-46-5-396-425
156
Reena Kumari, Senthilnathan Palaniyandi, Gerhard Carl Hildebrandt. Microbiome: An Emerging New Frontier in Graft-Versus-Host DiseaseDigestive Diseases and Sciences 2019; 64(3): 669 doi: 10.1007/s10620-018-5369-9
157
Marie Binvignat, Harry Sokol, Encarnita Mariotti-Ferrandiz, Francis Berenbaum, Jérémie Sellam. Osteoarthritis and gut microbiomeJoint Bone Spine 2021; 88(5): 105203 doi: 10.1016/j.jbspin.2021.105203
158
Eamonn M.M. Quigley. Basic Definitions and Concepts: Organization of the Gut MicrobiomeGastroenterology Clinics of North America 2017; 46(1): 1 doi: 10.1016/j.gtc.2016.09.002
159
Y. Seesao, M. Gay, S. Merlin, E. Viscogliosi, C.M. Aliouat-Denis, C. Audebert. A review of methods for nematode identificationJournal of Microbiological Methods 2017; 138: 37 doi: 10.1016/j.mimet.2016.05.030
160
Gaud Catho, Benedikt D Huttner. Strategies for the eradication of extended-spectrum beta-lactamase or carbapenemase-producing Enterobacteriaceae intestinal carriageExpert Review of Anti-infective Therapy 2019; 17(8): 557 doi: 10.1080/14787210.2019.1645007
161
Manoj Kumar Verma, Vasim Ahmed, Shashank Gupta, Jitendra Kumar, Rajesh Pandey, Vibha Mandhan, Nar Singh Chauhan. Functional metagenomics identifies novel genes ABCTPP, TMSRP1 and TLSRP1 among human gut enterotypesScientific Reports 2018; 8(1) doi: 10.1038/s41598-018-19862-5
162
Efrat L. Amitay, Agne Krilaviciute, Hermann Brenner. Systematic review: Gut microbiota in fecal samples and detection of colorectal neoplasmsGut Microbes 2018; : 1 doi: 10.1080/19490976.2018.1445957
163
Jean Pierre Rutanga, Sandra Van Puyvelde, Anne-Sophie Heroes, Claude Mambo Muvunyi, Jan Jacobs, Stijn Deborggraeve. 16S metagenomics for diagnosis of bloodstream infections: opportunities and pitfallsExpert Review of Molecular Diagnostics 2018; 18(8): 749 doi: 10.1080/14737159.2018.1498786
164
Estela Salagre, Eduard Vieta, Iria Grande. The visceral brain: Bipolar disorder and microbiotaRevista de Psiquiatría y Salud Mental (English Edition) 2017; 10(2): 67 doi: 10.1016/j.rpsmen.2017.02.005
165
Jan-Ulrich Kreft, Caroline M. Plugge, Clara Prats, Johan H. J. Leveau, Weiwen Zhang, Ferdi L. Hellweger. From Genes to Ecosystems in Microbiology: Modeling Approaches and the Importance of IndividualityFrontiers in Microbiology 2017; 8 doi: 10.3389/fmicb.2017.02299
166
Shahd Ezzeldin, Aya El-Wazir, Shymaa Enany, Abdelrahman Muhammad, Dina Johar, Aya Osama, Eman Ahmed, Hassan Shikshaky, Sameh Magdeldin. Current Understanding of Human Metaproteome Association and ModulationJournal of Proteome Research 2019; 18(10): 3539 doi: 10.1021/acs.jproteome.9b00301
167
Jose E. Martínez, Augusto Vargas, Tania Pérez-Sánchez, Ignacio J. Encío, Miriam Cabello-Olmo, Miguel Barajas. Human Microbiota Network: Unveiling Potential Crosstalk between the Different Microbiota Ecosystems and Their Role in Health and DiseaseNutrients 2021; 13(9): 2905 doi: 10.3390/nu13092905
168
Mariam Doualeh, Matthew Payne, Edward Litton, Edward Raby, Andrew Currie. Molecular Methodologies for Improved Polymicrobial Sepsis DiagnosisInternational Journal of Molecular Sciences 2022; 23(9): 4484 doi: 10.3390/ijms23094484
169
Huafeng Lin, Qing-Yu He, Lei Shi, Mark Sleeman, Mark S. Baker, Edouard C. Nice. Proteomics and the microbiome: pitfalls and potentialExpert Review of Proteomics 2019; 16(6): 501 doi: 10.1080/14789450.2018.1523724
170
Thierry Pédron, Giulia Nigro, Philippe J. Sansonetti. From homeostasis to pathology: decrypting microbe–host symbiotic signals in the intestinal cryptPhilosophical Transactions of the Royal Society B: Biological Sciences 2016; 371(1707): 20150500 doi: 10.1098/rstb.2015.0500
171
Hyun Kim, Yong-Hwan Lee. The Rice Microbiome: A Model Platform for Crop HolobiomePhytobiomes Journal 2020; 4(1): 5 doi: 10.1094/PBIOMES-07-19-0035-RVW
172
Samuel T. Westreich, Jaime Salcedo, Blythe Durbin-Johnson, Jennifer T. Smilowitz, Ian Korf, David A. Mills, Daniela Barile, Danielle G. Lemay. Fecal metatranscriptomics and glycomics suggest that bovine milk oligosaccharides are fully utilized by healthy adultsThe Journal of Nutritional Biochemistry 2020; 79: 108340 doi: 10.1016/j.jnutbio.2020.108340
173
Rohan M. Shah, Elizabeth J. McKenzie, Magda T. Rosin, Snehal R. Jadhav, Shakuntla V. Gondalia, Douglas Rosendale, David J. Beale. An Integrated Multi-Disciplinary Perspective for Addressing Challenges of the Human Gut MicrobiomeMetabolites 2020; 10(3): 94 doi: 10.3390/metabo10030094
174
Yuanfeng Liu, Xiang Li, Yudie Yang, Ye Liu, Shijun Wang, Boyang Ji, Yongjun Wei. Exploring Gut Microbiota in Patients with Colorectal Disease Based on 16S rRNA Gene Amplicon and Shallow Metagenomic SequencingFrontiers in Molecular Biosciences 2021; 8 doi: 10.3389/fmolb.2021.703638
175
Lusine Khachatryan, Rick H. de Leeuw, Margriet E.M. Kraakman, Nikos Pappas, Marije te Raa, Hailiang Mei, Peter de Knijff, Jeroen F.J. Laros. Taxonomic classification and abundance estimation using 16S and WGS—A comparison using controlled reference samplesForensic Science International: Genetics 2020; 46: 102257 doi: 10.1016/j.fsigen.2020.102257
176
Lucky T. Nesengani, Jun Wang, Yujiang Yang, Lianyu Yang, Wenfa Lu. Unravelling vaginal microbial genetic diversity and abundance between Holstein and Fleckvieh cattleRSC Advances 2017; 7(88): 56137 doi: 10.1039/C7RA10553C
177
Pamela A. McCombe, Robert D. Henderson, Aven Lee, John D. Lee, Trent M. Woodruff, Restuadi Restuadi, Allan McRae, Naomi R. Wray, Shyuan Ngo, Frederik J. Steyn. Gut microbiota in ALS: possible role in pathogenesis?Expert Review of Neurotherapeutics 2019; 19(9): 785 doi: 10.1080/14737175.2019.1623026
178
Toral Manvar, Vijay Lakhujani. Encyclopedia of Bioinformatics and Computational Biology2019; : 200 doi: 10.1016/B978-0-12-809633-8.20503-7
179
Zenon Zduńczyk. Functioning of the Intestinal Ecosystem: From New Technologies in Microbial Research to Practical Poultry Feeding – A ReviewAnnals of Animal Science 2019; 19(2): 239 doi: 10.2478/aoas-2019-0007
180
Samuel Anyaso-Samuel, Archie Sachdeva, Subharup Guha, Somnath Datta. Statistical Analysis of Microbiome DataFrontiers in Probability and the Statistical Sciences 2021; : 45 doi: 10.1007/978-3-030-73351-3_3
181
Anukriti Sharma, Rup Lal. Survey of (Meta)genomic Approaches for Understanding Microbial Community DynamicsIndian Journal of Microbiology 2017; 57(1): 23 doi: 10.1007/s12088-016-0629-x
182
Mudra Khare, Dhiraj Sinha, Rita Zgheib, Sory Ibrahima Traore, Jean-Christophe Lagier, Didier Raoult, Pierre-Edouard Fournier. Genomic description and characterization of Nigeribacterium massiliense gen. nov., sp. nov., isolated from the human gutMicrobes and Infection 2021; 23(8): 104842 doi: 10.1016/j.micinf.2021.104842
183
Hayato Takihara, Nobuaki Miura, Kiyoko F. Aoki-Kinoshita, Shujiro Okuda. Functional glyco-metagenomics elucidates the role of glycan-related genes in environmentsBMC Bioinformatics 2021; 22(1) doi: 10.1186/s12859-021-04425-9
184
Xiaoyang Wu, Huanxin Zhang, Jun Chen, Shuai Shang, Jiakuo Yan, Yao Chen, Xuexi Tang, Honghai Zhang. Analysis and comparison of the wolf microbiome under different environmental factors using three different data of Next Generation SequencingScientific Reports 2017; 7(1) doi: 10.1038/s41598-017-11770-4