For: | Wang WL, Xu SY, Ren ZG, Tao L, Jiang JW, Zheng SS. Application of metagenomics in the human gut microbiome. World J Gastroenterol 2015; 21(3): 803-814 [PMID: 25624713 DOI: 10.3748/wjg.v21.i3.803] |
---|---|
URL: | https://www.wjgnet.com/1948-5182/full/v21/i3/803.htm |
Number | Citing Articles |
1 |
Maya Raman, Padma Ambalam, Mukesh Doble. Probiotics and Bioactive Carbohydrates in Colon Cancer Management. 2016; : 15 doi: 10.1007/978-81-322-2586-7_2
|
2 |
Yi Wang, Jiabao Xu, Lingchao Kong, Bei Li, Hang Li, Wei E. Huang, Chunmiao Zheng. Raman‐activated sorting of antibiotic‐resistant bacteria in human gut microbiota. Environmental Microbiology 2020; 22(7): 2613 doi: 10.1111/1462-2920.14962
|
3 |
Uffe Vest Schneider, Nikolaj Dam Mikkelsen, Flemming Scheutz, Alice Friis-Møller, Gorm Lisby, Ruslan Kalendar. Nonaplex PCR using Cliffhanger primers to identify diarrhoeagenic Escherichia coli from crude lysates of human faecal samples. PLOS ONE 2018; 13(6): e0199766 doi: 10.1371/journal.pone.0199766
|
4 |
Emilee E. Shine, Jason M. Crawford. Molecules from the Microbiome. Annual Review of Biochemistry 2021; 90(1): 789 doi: 10.1146/annurev-biochem-080320-115307
|
5 |
Maria Muñoz-Benavent, Felix Hartkopf, Tim Van Den Bossche, Vitor C Piro, Carlos García-Ferris, Amparo Latorre, Bernhard Y Renard, Thilo Muth. gNOMO: a multi-omics pipeline for integrated host and microbiome analysis of non-model organisms. NAR Genomics and Bioinformatics 2020; 2(3) doi: 10.1093/nargab/lqaa058
|
6 |
Elsa Pinto, Marisol Anselmo, Manuela Calha, Andrew Bottrill, Isabel Duarte, Peter W Andrew, Maria L Faleiro. The intestinal proteome of diabetic and control children is enriched with different microbial and host proteins.
Microbiology
2017; 163(2): 161 doi: 10.1099/mic.0.000412
|
7 |
Lucy J. Mailing, Jacob M. Allen, Thomas W. Buford, Christopher J. Fields, Jeffrey A. Woods. Exercise and the Gut Microbiome: A Review of the Evidence, Potential Mechanisms, and Implications for Human Health. Exercise and Sport Sciences Reviews 2019; 47(2): 75 doi: 10.1249/JES.0000000000000183
|
8 |
Sara Iqbal, Eamonn M. M. Quigley. Progress in Our Understanding of the Gut Microbiome: Implications for the Clinician. Current Gastroenterology Reports 2016; 18(9) doi: 10.1007/s11894-016-0524-y
|
9 |
Aitor Blanco-Míguez, Florentino Fdez-Riverola, Borja Sánchez, Anália Lourenço. Resources and tools for the high-throughput, multi-omic study of intestinal microbiota. Briefings in Bioinformatics 2019; 20(3): 1032 doi: 10.1093/bib/bbx156
|
10 |
Daniela Braconi, Annalisa Santucci. Comprehensive Foodomics. 2021; : 558 doi: 10.1016/B978-0-08-100596-5.22898-9
|
11 |
Michael S. Johns, Nicholas J. Petrelli. Microbiome and colorectal cancer: A review of the past, present, and future. Surgical Oncology 2021; 37: 101560 doi: 10.1016/j.suronc.2021.101560
|
12 |
Dharman Kalaimurugan, Balasubramanian Balamuralikrishnan, Rasiravathanahalli Kaveriyappan Govindarajan, Naif Abdullah Al-Dhabi, Mariadhas Valan Arasu, Chithravel Vadivalagan, Srinivasan Venkatesan, Hesam Kamyab, Shreeshivadasan Chelliapan, Chartchai Khanongnuch. Production and Characterization of a Novel Biosurfactant Molecule from Bacillus safensis YKS2 and Assessment of Its Efficiencies in Wastewater Treatment by a Directed Metagenomic Approach. Sustainability 2022; 14(4): 2142 doi: 10.3390/su14042142
|
13 |
Panagiotis Agioutantis, Vassiliki Lila Koumandou. Bioenergetic diversity of the human gut microbiome. Meta Gene 2018; 16: 10 doi: 10.1016/j.mgene.2017.12.007
|
14 |
D. Rianda, R. Agustina, E.A. Setiawan, N.R.M. Manikam. Effect of probiotic supplementation on cognitive function in children and adolescents: a systematic review of randomised trials. Beneficial Microbes 2019; 10(8): 873 doi: 10.3920/BM2019.0068
|
15 |
Nazanin Parhizgar, Mehrnaz Azadyekta, Parynaz Parhizgar. Validity and Reliability Assessments of a 16-item Food Frequency Questionnaire as a Probiotic and Prebiotic Consumption Scale in People Aged 20 to 40 Years in Tehran. Nutrition and Food Sciences Research 2021; 8(2): 35 doi: 10.52547/nfsr.8.2.35
|
16 |
Melhem Bilen. Strategies and advancements in human microbiome description and the importance of culturomics. Microbial Pathogenesis 2020; 149: 104460 doi: 10.1016/j.micpath.2020.104460
|
17 |
Yaocheng Cui, Jiancheng Qi, Dongjie Cai, Jing Fang, Yue Xie, Hongrui Guo, Shiyi Chen, Xiaoping Ma, Liping Gou, Hengmin Cui, Yi Geng, Gang Ye, Zhijun Zhong, Zhihua Ren, Yanchun Hu, Ya Wang, Junliang Deng, Shuming Yu, Suizhong Cao, Huawei Zou, Zhisheng Wang, Zhicai Zuo. Metagenomics Reveals That Proper Placement After Long-Distance Transportation Significantly Affects Calf Nasopharyngeal Microbiota and Is Critical for the Prevention of Respiratory Diseases. Frontiers in Microbiology 2021; 12 doi: 10.3389/fmicb.2021.700704
|
18 |
Sejeong Kim, Jong-Chan Kim, Sunhyun Park, Jinkwi Kim, Yohan Yoon, Heeyoung Lee. Identification of Microbial Flora in Dry Aged Beef to Evaluate the Rancidity during Dry Aging. Processes 2021; 9(11): 2049 doi: 10.3390/pr9112049
|
19 |
Romit Mitra, Lipika Das, Subrata K. Das. Microbial Diversity in Ecosystem Sustainability and Biotechnological Applications. 2019; : 355 doi: 10.1007/978-981-13-8315-1_12
|
20 |
Bin Xue, Kun Dai, Xi Zhang, Shang Wang, Chenyu Li, Chen Zhao, Xiaobo Yang, Zhuge Xi, Zhigang Qiu, Zhiqiang Shen, Jingfeng Wang. Low-concentration of dichloroacetonitrile (DCAN) in drinking water perturbs the health-associated gut microbiome and metabolic profile in rats. Chemosphere 2020; 258: 127067 doi: 10.1016/j.chemosphere.2020.127067
|
21 |
Elliott D. Crouser, Tasha E. Fingerlin, Ivana V. Yang, Lisa A. Maier, Patrick Nana-Sinkam, Ronald G. Collman, Naftali Kaminski. Application of “Omics” and Systems Biology to Sarcoidosis Research. Annals of the American Thoracic Society 2017; 14(Supplement_6): S445 doi: 10.1513/AnnalsATS.201707-567OT
|
22 |
Haihua Liu, Huiying Liu, Chang Liu, Mengxue Shang, Tianfu Wei, Peiyuan Yin. Gut Microbiome and the Role of Metabolites in the Study of Graves’ Disease. Frontiers in Molecular Biosciences 2022; 9 doi: 10.3389/fmolb.2022.841223
|
23 |
Ahmed Abdelfattah, Santa O. Cacciola, Saveria Mosca, Rocco Zappia, Leonardo Schena. Analysis of the Fungal Diversity in Citrus Leaves with Greasy Spot Disease Symptoms. Microbial Ecology 2017; 73(3): 739 doi: 10.1007/s00248-016-0874-x
|
24 |
Stephen Hayes, Jennifer Mahony, Arjen Nauta, Douwe van Sinderen. Metagenomic Approaches to Assess Bacteriophages in Various Environmental Niches. Viruses 2017; 9(6): 127 doi: 10.3390/v9060127
|
25 |
Jiayu Shang, Yanni Sun. CHEER: HierarCHical taxonomic classification for viral mEtagEnomic data via deep leaRning. Methods 2021; 189: 95 doi: 10.1016/j.ymeth.2020.05.018
|
26 |
Learn-Han Lee, Sunny Hei Wong, Siok-Fong Chin, Vishal Singh, Nurul-Syakima Ab Mutalib. Editorial: Human Microbiome: Symbiosis to Pathogenesis. Frontiers in Microbiology 2021; 12 doi: 10.3389/fmicb.2021.605783
|
27 |
Jacinta Ryan, Sandra Jones, Peter Hayes, Jeffrey Craig. Leadership Evolution for Planetary Health: A Genomics Perspective. Challenges 2019; 10(1): 4 doi: 10.3390/challe10010004
|
28 |
Weilin Wang, Shaoyan Xu, Zhigang Ren, Jianwen Jiang, Shusen Zheng. Gut microbiota and allogeneic transplantation. Journal of Translational Medicine 2015; 13(1) doi: 10.1186/s12967-015-0640-8
|
29 |
Anuj Tyagi, Balwinder Singh, Naveen K. Billekallu Thammegowda, Niraj K. Singh. Shotgun metagenomics offers novel insights into taxonomic compositions, metabolic pathways and antibiotic resistance genes in fish gut microbiome. Archives of Microbiology 2019; 201(3): 295 doi: 10.1007/s00203-018-1615-y
|
30 |
Ekaterine Gabashvili, Saba Kobakhidze, Stylianos Koulouris, Tobin Robinson, Mamuka Kotetishvili. Bi- and Multi-directional Gene Transfer in the Natural Populations of Polyvalent Bacteriophages, and Their Host Species Spectrum Representing Foodborne Versus Other Human and/or Animal Pathogens. Food and Environmental Virology 2021; 13(2): 179 doi: 10.1007/s12560-021-09460-6
|
31 |
Oladipo Oladiti Olaniyi, Hongzhe Li, Yongguan Zhu, Li Cui. Metabolic responses of indigenous bacteria in chicken faeces and maggots to multiple antibiotics via heavy water labeled single-cell Raman spectroscopy. Journal of Environmental Sciences 2022; 113: 394 doi: 10.1016/j.jes.2021.06.024
|
32 |
Koji Ando, Qingjiang Hu, Yuta Kasagi, Eiji Oki, Masaki Mori. Recent developments in cancer research: Expectations for a new remedy. Annals of Gastroenterological Surgery 2021; 5(4): 419 doi: 10.1002/ags3.12440
|
33 |
Kang Zhou, Nen-Qun Xiao, Zhou-Jin Tan. Intestinal microecological mechanism for Baohe Pill to treat food-stagnation-type gastrointestinal diarrhea. World Chinese Journal of Digestology 2022; 30(5): 217 doi: 10.11569/wcjd.v30.i5.217
|
34 |
Mohammad Al-Balawi, Fatthy Mohamed Morsy. Enterococcus faecalis Is a Better Competitor Than Other Lactic Acid Bacteria in the Initial Colonization of Colon of Healthy Newborn Babies at First Week of Their Life. Frontiers in Microbiology 2020; 11 doi: 10.3389/fmicb.2020.02017
|
35 |
Yanping Zheng, Ying Ran, Hongxia Zhang, Bangmao Wang, Lu Zhou. The Microbiome in Autoimmune Liver Diseases: Metagenomic and Metabolomic Changes. Frontiers in Physiology 2021; 12 doi: 10.3389/fphys.2021.715852
|
36 |
Lynnette R. Ferguson, Bobbi Laing, Gareth Marlow, Karen Bishop. The role of vitamin D in reducing gastrointestinal disease risk and assessment of individual dietary intake needs: Focus on genetic and genomic technologies. Molecular Nutrition & Food Research 2016; 60(1): 119 doi: 10.1002/mnfr.201500243
|
37 |
Shao-Chun Wu, Cheng-Shyuan Rau, Hang-Tsung Liu, Pao-Jen Kuo, Peng-Chen Chien, Ting-Min Hsieh, Ching-Hua Tsai, Jung-Fang Chuang, Chun-Ying Huang, Hsiao-Yun Hsieh, Ching-Hua Hsieh. Metagenome Analysis as a Tool to Study Bacterial Infection Associated with Acute Surgical Abdomen. Journal of Clinical Medicine 2018; 7(10): 346 doi: 10.3390/jcm7100346
|
38 |
You Zhou, Meishen Ren, Pengfei Zhang, Dike Jiang, Xueping Yao, Yan Luo, Zexiao Yang, Yin Wang. Application of Nanopore Sequencing in the Detection of Foodborne Microorganisms. Nanomaterials 2022; 12(9): 1534 doi: 10.3390/nano12091534
|
39 |
Namwiinga Ndulo, Rory Peters, Kirsten Macgregor, Mercy Imasiku, Beatrice Amadi, Paul Kelly. Infrequent small bowel intestinal bacterial overgrowth in malnourished Zambian children. Pan African Medical Journal 2020; 35 doi: 10.11604/pamj.2020.35.29.9831
|
40 |
Hojat Dehghanbanadaki, Hossein Aazami, Hanieh Sadat Ejtahed, Ahmad Sohrabi, Shahrbanoo Keshavarz Azizi Raftar, Samira Tarashi, Ozra Tabatabaei-Malazy, Golnaz Bahramali, Seyed Davar Siadat, Ensieh Nasli Esfahani, Farideh Razi. The global scientific publications on gut microbiota in type 2 diabetes; a bibliometric, Scientometric, and descriptive analysis. Journal of Diabetes & Metabolic Disorders 2021; doi: 10.1007/s40200-021-00920-1
|
41 |
Ning-Ning Liu, Qiang Ma, Yang Ge, Cheng-Xiang Yi, Lu-Qi Wei, Jing-Cong Tan, Qiao Chu, Jing-Quan Li, Peng Zhang, Hui Wang. Microbiome dysbiosis in lung cancer: from composition to therapy. npj Precision Oncology 2020; 4(1) doi: 10.1038/s41698-020-00138-z
|
42 |
Najla El-Jurdi, Marcos de Lima, Hillard Lazarus, Mahmoud A. Ghannoum. Microbiome: Its Impact Is Being Revealed!. Current Clinical Microbiology Reports 2017; 4(2): 78 doi: 10.1007/s40588-017-0063-9
|
43 |
Sivadasanpillai Harikrishnan. Diet, the Gut Microbiome and Heart Failure. Cardiac Failure Review 2019; 5(2): 119 doi: 10.15420/cfr.2018.39.2
|
44 |
Nadeem Siddiqui, Potluri Bhavana, Vemuri Sarvani. Impact of Metabolic Regulation in Understanding the Status of Human Health and Diseases: A Review. International Journal of Pharma and Bio Sciences 2022; 12(1): 19 doi: 10.22376/ijpbs/lpr.2022.12.1.L19-31
|
45 |
Sasha R. Fehily, Chamara Basnayake, Emily K. Wright, Michael A. Kamm. The gut microbiota and gut disease. Internal Medicine Journal 2021; 51(10): 1594 doi: 10.1111/imj.15520
|
46 |
Lauren S White, Johan Van den Bogaerde, Michael Kamm. The gut microbiota: cause and cure of gut diseases. Medical Journal of Australia 2018; 209(7): 312 doi: 10.5694/mja17.01067
|
47 |
Minh Thuy Vi Hoang, Laszlo Irinyi, Yiheng Hu, Benjamin Schwessinger, Wieland Meyer. Long-Reads-Based Metagenomics in Clinical Diagnosis With a Special Focus on Fungal Infections. Frontiers in Microbiology 2022; 12 doi: 10.3389/fmicb.2021.708550
|
48 |
Bei Gao, Liang Chi, Yixin Zhu, Xiaochun Shi, Pengcheng Tu, Bing Li, Jun Yin, Nan Gao, Weishou Shen, Bernd Schnabl. An Introduction to Next Generation Sequencing Bioinformatic Analysis in Gut Microbiome Studies. Biomolecules 2021; 11(4): 530 doi: 10.3390/biom11040530
|
49 |
Emidio SCARPELLINI, Martina BASILICO, Emanuele RINNINELLA, Florencia CARBONE, Jolien SCHOL, Carlo RASETTI, Ludovico ABENAVOLI, Pierangelo SANTORI. Probiotics and gut health. Minerva Gastroenterology 2022; 67(4) doi: 10.23736/S2724-5985.21.02910-7
|
50 |
Lorena Ruiz, Claudio Hidalgo, Aitor Blanco-Míguez, Anália Lourenço, Borja Sánchez, Abelardo Margolles. Tackling probiotic and gut microbiota functionality through proteomics. Journal of Proteomics 2016; 147: 28 doi: 10.1016/j.jprot.2016.03.023
|
51 |
Raquel Ortigão, Pedro Pimentel-Nunes, Mário Dinis-Ribeiro, Diogo Libânio. Gastrointestinal Microbiome – What We Need to Know in Clinical Practice. GE - Portuguese Journal of Gastroenterology 2020; 27(5): 336 doi: 10.1159/000505036
|
52 |
Maria Gavriilaki, Ioanna Sakellari, Achilles Anagnostopoulos, Eleni Gavriilaki. The Impact of Antibiotic-Mediated Modification of the Intestinal Microbiome on Outcomes of Allogeneic Hematopoietic Cell Transplantation: Systematic Review and Meta-Analysis. Biology of Blood and Marrow Transplantation 2020; 26(9): 1738 doi: 10.1016/j.bbmt.2020.05.011
|
53 |
Shuai Zhuang, Yuqing Tan, Hui Hong, Dapeng Li, Longteng Zhang, Yongkang Luo. Exploration of the roles of spoilage bacteria in degrading grass carp proteins during chilled storage: A combined metagenomic and metabolomic approach. Food Research International 2022; 152: 110926 doi: 10.1016/j.foodres.2021.110926
|
54 |
H. L. Simpson, B. J. Campbell. Review article: dietary fibre-microbiota interactions. Alimentary Pharmacology & Therapeutics 2015; 42(2): 158 doi: 10.1111/apt.13248
|
55 |
Mubanga Hellen Kabwe, Surendra Vikram, Khodani Mulaudzi, Janet K. Jansson, Thulani P. Makhalanyane. The gut mycobiota of rural and urban individuals is shaped by geography. BMC Microbiology 2020; 20(1) doi: 10.1186/s12866-020-01907-3
|
56 |
Xin Zhang, Shubhagata Das, Sherry Dunbar, Yi-Wei Tang. . Advances in Clinical Chemistry 2020; 99: 49 doi: 10.1016/bs.acc.2020.02.007
|
57 |
Feng Chen, Qi Wen, Jun Jiang, Hai-Long Li, Yin-Feng Tan, Yong-Hui Li, Nian-Kai Zeng. Could the gut microbiota reconcile the oral bioavailability conundrum of traditional herbs?. Journal of Ethnopharmacology 2016; 179: 253 doi: 10.1016/j.jep.2015.12.031
|
58 |
Yan Ni, Gang Yu, Huan Chen, Yongqiong Deng, Philippa M Wells, Claire J Steves, Feng Ju, Junfen Fu, Jinbo Xu. M2IA: a web server for microbiome and metabolome integrative analysis. Bioinformatics 2020; 36(11): 3493 doi: 10.1093/bioinformatics/btaa188
|
59 |
丹 李. Research Progress on the Relationship between Biliary Calculi, Tumor and Microorganism. Advances in Clinical Medicine 2021; 11(03): 912 doi: 10.12677/ACM.2021.113131
|
60 |
Radu Tudor Ciornei, Claudiu Cobuz, Silvia Filipiuc, Elisa Albu, Mihai Covasa. Evaluation of Metabolic Syndrome in Type-2 Diabetes Mellitus and the Role of Gut Microbiota: the microDIAB Study. 2019 E-Health and Bioengineering Conference (EHB) 2019; : 1 doi: 10.1109/EHB47216.2019.8969991
|
61 |
Jiancheng Qi, Dongjie Cai, Yaocheng Cui, Tianyu Tan, Huawei Zou, Wei Guo, Yue Xie, Hongrui Guo, Shi-Yi Chen, Xiaoping Ma, Liping Gou, Hengmin Cui, Yi Geng, Ming Zhang, Gang Ye, Zhijun Zhong, Zhihua Ren, Yanchun Hu, Ya Wang, Junliang Deng, Shumin YU, Suizhong Cao, Metha Wanapat, Jing Fang, Zhisheng Wang, Zhicai Zuo. Metagenomics Reveals That Intravenous Injection of Beta-Hydroxybutyric Acid (BHBA) Disturbs the Nasopharynx Microflora and Increases the Risk of Respiratory Diseases. Frontiers in Microbiology 2021; 11 doi: 10.3389/fmicb.2020.630280
|
62 |
Gamaliel López-Leal, Fernanda Cornejo-Granados, Juan Manuel Hurtado-Ramírez, Alfredo Mendoza-Vargas, Adrian Ochoa-Leyva. Functional and taxonomic classification of a greenhouse water drain metagenome. Standards in Genomic Sciences 2018; 13(1) doi: 10.1186/s40793-018-0326-y
|
63 |
Srinivasan Mahalingam, Dhanasekaran Dharumadurai, Govindaraju Archunan. Vaginal microbiome analysis of buffalo (Bubalus bubalis) during estrous cycle using high-throughput amplicon sequence of 16S rRNA gene. Symbiosis 2019; 78(1): 97 doi: 10.1007/s13199-018-00595-y
|
64 |
Veronica Moskovicz, Adi Gross, Boaz Mizrahi. Extrinsic Factors Shaping the Skin Microbiome. Microorganisms 2020; 8(7): 1023 doi: 10.3390/microorganisms8071023
|
65 |
Marie Binvignat, Harry Sokol, Encarnita Mariotti-Ferrandiz, Francis Berenbaum, Jérémie Sellam. Arthrose et microbiote intestinal. Revue du Rhumatisme Monographies 2021; 88(2): 92 doi: 10.1016/j.monrhu.2021.02.001
|
66 |
Soumya Chatterjee, Sibnarayan Datta, Dharmendra K. Gupta. Arsenic Contamination in the Environment. 2017; : 37 doi: 10.1007/978-3-319-54356-7_3
|
67 |
Basit Yousuf, Avinash Mishra. Microbial Diversity in the Genomic Era. 2019; : 519 doi: 10.1016/B978-0-12-814849-5.00029-0
|
68 |
Amedeo Minichino, Matthew A. Jackson, Marta Francesconi, Claire J. Steves, Cristina Menni, Philip W. J. Burnet, Belinda R. Lennox. Endocannabinoid system mediates the association between gut-microbial diversity and anhedonia/amotivation in a general population cohort. Molecular Psychiatry 2021; 26(11): 6269 doi: 10.1038/s41380-021-01147-5
|
69 |
Pavol Fülöp, Marianna Dvorožňáková, Marianna Vachalcová, Zuzana Fülöpová, Katarína Šoltys, Gabriel Valočik. Gut microbiome in heart failure and aortic stenosis. Vnitřní lékařství 2022; 68(2): E04 doi: 10.36290/vnl.2022.026
|
70 |
Joseph Krystel, Qingchun Shi, Jefferson Shaw, Goutam Gupta, David Hall, Ed Stover. An in vitro protocol for rapidly assessing the effects of antimicrobial compounds on the unculturable bacterial plant pathogen, Candidatus Liberibacter asiaticus. Plant Methods 2019; 15(1) doi: 10.1186/s13007-019-0465-1
|
71 |
Sandeep Appunni, Muni Rubens, Venkataraghavan Ramamoorthy, Raees Tonse, Anshul Saxena, Peter McGranaghan, Adeel Kaiser, Rupesh Kotecha. Emerging Evidence on the Effects of Dietary Factors on the Gut Microbiome in Colorectal Cancer. Frontiers in Nutrition 2021; 8 doi: 10.3389/fnut.2021.718389
|
72 |
Pey Yee Lee, Siok-Fong Chin, Hui-min Neoh, Rahman Jamal. Metaproteomic analysis of human gut microbiota: where are we heading?. Journal of Biomedical Science 2017; 24(1) doi: 10.1186/s12929-017-0342-z
|
73 |
B. C. Guard, J. S. Suchodolski. HORSE SPECIES SYMPOSIUM: Canine intestinal microbiology and metagenomics: From phylogeny to function1. Journal of Animal Science 2016; 94(6): 2247 doi: 10.2527/jas.2015-0029
|
74 |
Tao Hong, Rui Wang, Xiaoqi Wang, Shijie Yang, Weihao Wang, Qiangguo Gao, Xi Zhang. Interplay Between the Intestinal Microbiota and Acute Graft-Versus-Host Disease: Experimental Evidence and Clinical Significance. Frontiers in Immunology 2021; 12 doi: 10.3389/fimmu.2021.644982
|
75 |
Yaxin Pei, Zhengsheng Yu, Jing Ji, Aman Khan, Xiangkai Li. Microbial Community Structure and Function Indicate the Severity of Chromium Contamination of the Yellow River. Frontiers in Microbiology 2018; 9 doi: 10.3389/fmicb.2018.00038
|
76 |
Ian Rowland, Glenn Gibson, Almut Heinken, Karen Scott, Jonathan Swann, Ines Thiele, Kieran Tuohy. Gut microbiota functions: metabolism of nutrients and other food components. European Journal of Nutrition 2018; 57(1): 1 doi: 10.1007/s00394-017-1445-8
|
77 |
Santosh Lamichhane, Partho Sen, Alex M. Dickens, Matej Orešič, Hanne Christine Bertram. Gut metabolome meets microbiome: A methodological perspective to understand the relationship between host and microbe. Methods 2018; 149: 3 doi: 10.1016/j.ymeth.2018.04.029
|
78 |
Xinyao Tian, Zhe Yang, Fangzhou Luo, Shusen Zheng. Gut microbial balance and liver transplantation: alteration, management, and prediction. Frontiers of Medicine 2018; 12(2): 123 doi: 10.1007/s11684-017-0563-2
|
79 |
Lindsay M. Hopson, Stephanie S. Singleton, John A. David, Atin Basuchoudhary, Stefanie Prast-Nielsen, Pavel Klein, Sabyasachi Sen, Raja Mazumder. The Microbiome. Progress in Molecular Biology and Translational Science 2020; 176: 141 doi: 10.1016/bs.pmbts.2020.08.011
|
80 |
Benjamin C. Fu, Timothy W. Randolph, Unhee Lim, Kristine R. Monroe, Iona Cheng, Lynne R. Wilkens, Loïc Le Marchand, Meredith A.J. Hullar, Johanna W. Lampe. Characterization of the gut microbiome in epidemiologic studies: the multiethnic cohort experience. Annals of Epidemiology 2016; 26(5): 373 doi: 10.1016/j.annepidem.2016.02.009
|
81 |
Jose Antonio Garrido-Cardenas, Francisco Manzano-Agugliaro. The metagenomics worldwide research. Current Genetics 2017; 63(5): 819 doi: 10.1007/s00294-017-0693-8
|
82 |
Marjorie F. Oleksiak, Om P. Rajora. Population Genomics: Marine Organisms. Population Genomics 2019; : 3 doi: 10.1007/13836_2019_70
|
83 |
Nicholas D. Youngblut, Jacobo de la Cuesta-Zuluaga, Georg H. Reischer, Silke Dauser, Nathalie Schuster, Chris Walzer, Gabrielle Stalder, Andreas H. Farnleitner, Ruth E. Ley, Jack A. Gilbert. Large-Scale Metagenome Assembly Reveals Novel Animal-Associated Microbial Genomes, Biosynthetic Gene Clusters, and Other Genetic Diversity. mSystems 2020; 5(6) doi: 10.1128/mSystems.01045-20
|
84 |
J. Schulberg, P. De Cruz. Characterisation and therapeutic manipulation of the gut microbiome in inflammatory bowel disease. Internal Medicine Journal 2016; 46(3): 266 doi: 10.1111/imj.13003
|
85 |
Gherman Uritskiy, Jocelyne DiRuggiero. Applying Genome-Resolved Metagenomics to Deconvolute the Halophilic Microbiome. Genes 2019; 10(3): 220 doi: 10.3390/genes10030220
|
86 |
Jose Antonio Garrido-Cardenas, María Inmaculada Polo-López, Isabel Oller-Alberola. Advanced microbial analysis for wastewater quality monitoring: metagenomics trend. Applied Microbiology and Biotechnology 2017; 101(20): 7445 doi: 10.1007/s00253-017-8490-3
|
87 |
Anna Chizhayeva, Yelena Oleinikova, Margarita Saubenova, Amankeldy Sadanov, Alma Amangeldi, Aida Aitzhanova, Aigul Alybaeva, Makpal Yelubaeva. Impact of probiotics and their metabolites in enhancement the functional properties of whey-based beverages. AIMS Agriculture and Food 2020; 5(3): 521 doi: 10.3934/agrfood.2020.3.521
|
88 |
Christine Anyansi, Timothy J. Straub, Abigail L. Manson, Ashlee M. Earl, Thomas Abeel. Computational Methods for Strain-Level Microbial Detection in Colony and Metagenome Sequencing Data. Frontiers in Microbiology 2020; 11 doi: 10.3389/fmicb.2020.01925
|
89 |
Shanshan Yu, Yangyang Xiong, Yangyang Fu, Guorong Chen, Huadong Zhu, Xun Mo, Dong Wu, Jun Xu. Shotgun metagenomics reveals significant gut microbiome features in different grades of acute pancreatitis. Microbial Pathogenesis 2021; 154: 104849 doi: 10.1016/j.micpath.2021.104849
|
90 |
Vartika Bisht, Animesh Acharjee, Georgios V. Gkoutos. NFnetFu: A novel workflow for microbiome data fusion. Computers in Biology and Medicine 2021; 135: 104556 doi: 10.1016/j.compbiomed.2021.104556
|
91 |
Peter E. Larsen, Yang Dai. Metabolome of human gut microbiome is predictive of host dysbiosis. GigaScience 2015; 4(1) doi: 10.1186/s13742-015-0084-3
|
92 |
Humphrey A. Mabwi, Eunjung Kim, Dae-Geun Song, Hyo Shin Yoon, Cheol-Ho Pan, Erick.V.G. Komba, GwangPyo Ko, Kwang Hyun Cha. Synthetic gut microbiome: Advances and challenges. Computational and Structural Biotechnology Journal 2021; 19: 363 doi: 10.1016/j.csbj.2020.12.029
|
93 |
Elizabeth G. Phimister, Susan V. Lynch, Oluf Pedersen. The Human Intestinal Microbiome in Health and Disease. New England Journal of Medicine 2016; 375(24): 2369 doi: 10.1056/NEJMra1600266
|
94 |
Sven-Bastiaan Haange, Nico Jehmlich. Proteomic interrogation of the gut microbiota: potential clinical impact. Expert Review of Proteomics 2016; 13(6): 535 doi: 10.1080/14789450.2016.1190652
|
95 |
Atif Khurshid Wani, Priyanka Roy, Vijay Kumar, Tahir ul Gani Mir. Metagenomics and artificial intelligence in the context of human health. Infection, Genetics and Evolution 2022; 100: 105267 doi: 10.1016/j.meegid.2022.105267
|
96 |
Patrick Coit, Amr H. Sawalha. The human microbiome in rheumatic autoimmune diseases: A comprehensive review. Clinical Immunology 2016; 170: 70 doi: 10.1016/j.clim.2016.07.026
|
97 |
Ravindra Pal Singh, Ramesh Kothari, Suhelen Egan. Systems Biology of Marine Ecosystems. 2017; : 301 doi: 10.1007/978-3-319-62094-7_15
|
98 |
Eamonn M. M. Quigley. Microbiota-Brain-Gut Axis and Neurodegenerative Diseases. Current Neurology and Neuroscience Reports 2017; 17(12) doi: 10.1007/s11910-017-0802-6
|
99 |
|
100 |
Jeannette S. Messer, Eugene B. Chang. Physiology of the Gastrointestinal Tract. 2018; : 795 doi: 10.1016/B978-0-12-809954-4.00036-0
|
101 |
Dirk K. Wissenbach, Kaitlyn Oliphant, Ulrike Rolle-Kampczyk, Sandi Yen, Henrike Höke, Sven Baumann, Sven B. Haange, Elena F. Verdu, Emma Allen-Vercoe, Martin von Bergen. Optimization of metabolomics of defined in vitro gut microbial ecosystems. International Journal of Medical Microbiology 2016; 306(5): 280 doi: 10.1016/j.ijmm.2016.03.007
|
102 |
Reuben Maghembe, Donath Damian, Abdalah Makaranga, Stephen Samwel Nyandoro, Sylvester Leonard Lyantagaye, Souvik Kusari, Rajni Hatti-Kaul. Omics for Bioprospecting and Drug Discovery from Bacteria and Microalgae. Antibiotics 2020; 9(5): 229 doi: 10.3390/antibiotics9050229
|
103 |
Jun-Ke Wang, Shu-Kun Yao, Duygu Ağagündüz. Roles of Gut Microbiota and Metabolites in Pathogenesis of Functional Constipation. Evidence-Based Complementary and Alternative Medicine 2021; 2021: 1 doi: 10.1155/2021/5560310
|
104 |
Fatima Shahid, Tahreem Zaheer, Hayeqa Shahwar Awan, Maaz Waseem, Amina Basheer, Amjad Ali. Biotechnology in Healthcare, Volume 1. 2022; : 227 doi: 10.1016/B978-0-323-89837-9.00009-7
|
105 |
Ting Jia, Sufen Zhao, Katrina Knott, Xiaoguang Li, Yan Liu, Ying Li, Yuefei Chen, Minghai Yang, Yanping Lu, Junyi Wu, Chenglin Zhang. The gastrointestinal tract microbiota of northern white-cheeked gibbons (Nomascus leucogenys) varies with age and captive condition. Scientific Reports 2018; 8(1) doi: 10.1038/s41598-018-21117-2
|
106 |
Elisabeth Meedt, Andreas Hiergeist, André Gessner, Katja Dettmer, Gerhard Liebisch, Sakhila Ghimire, Hendrik Poeck, Matthias Edinger, Daniel Wolff, Wolfgang Herr, Ernst Holler, Daniela Weber. Prolonged Suppression of Butyrate-Producing Bacteria Is Associated With Acute Gastrointestinal Graft-vs-Host Disease and Transplantation-Related Mortality After Allogeneic Stem Cell Transplantation. Clinical Infectious Diseases 2022; 74(4): 614 doi: 10.1093/cid/ciab500
|
107 |
Omid Jazayeri, S. Mojtaba Daghighi, Farhad Rezaee. Lifestyle alters GUT-bacteria function: Linking immune response and host. Best Practice & Research Clinical Gastroenterology 2017; 31(6): 625 doi: 10.1016/j.bpg.2017.09.009
|
108 |
Seth J. Rotz, Christopher E. Dandoy. The microbiome in pediatric oncology. Cancer 2020; 126(16): 3629 doi: 10.1002/cncr.33030
|
109 |
Madangchanok Imchen, Ranjith Kumavath. Metagenomics for Gut Microbes. 2018; doi: 10.5772/intechopen.76214
|
110 |
Gherman V. Uritskiy, Jocelyne DiRuggiero, James Taylor. MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis. Microbiome 2018; 6(1) doi: 10.1186/s40168-018-0541-1
|
111 |
Yorick Janssens, Antoon Bronselaer, Evelien Wynendaele, Guy De Tré, Bart De Spiegeleer. Systems Medicine. 2021; : 468 doi: 10.1016/B978-0-12-801238-3.11526-0
|
112 |
A Zulian, R Cancello, E Cesana, E Rizzi, C Consolandi, M Severgnini, V Panizzo, A M Di Blasio, G Micheletto, C Invitti. Adipose tissue microbiota in humans: an open issue. International Journal of Obesity 2016; 40(11): 1643 doi: 10.1038/ijo.2016.111
|
113 |
Benedikt von Bronk, Alexandra Götz, Madeleine Opitz. Complex microbial systems across different levels of description. Physical Biology 2018; 15(5): 051002 doi: 10.1088/1478-3975/aac473
|
114 |
Alba Cortés, Laura E. Peachey, Timothy P. Jenkins, Riccardo Scotti, Cinzia Cantacessi. Helminths and microbes within the vertebrate gut – not all studies are created equal. Parasitology 2019; 146(11): 1371 doi: 10.1017/S003118201900088X
|
115 |
Ashton Harper, Malwina Naghibi, Davinder Garcha. The Role of Bacteria, Probiotics and Diet in Irritable Bowel Syndrome. Foods 2018; 7(2): 13 doi: 10.3390/foods7020013
|
116 |
|
117 |
Bettina Glasl, Nicole S. Webster, David G. Bourne. Microbial indicators as a diagnostic tool for assessing water quality and climate stress in coral reef ecosystems. Marine Biology 2017; 164(4) doi: 10.1007/s00227-017-3097-x
|
118 |
Masayuki Takahashi, Yasuko Kita, Akihiro Mizuno, Nami Goto-Yamamoto. Evaluation of method bias for determining bacterial populations in bacterial community analyses. Journal of Bioscience and Bioengineering 2017; 124(4): 476 doi: 10.1016/j.jbiosc.2017.05.007
|
119 |
Navid Adnani, Scott R. Rajski, Tim S. Bugni. Symbiosis-inspired approaches to antibiotic discovery. Natural Product Reports 2017; 34(7): 784 doi: 10.1039/C7NP00009J
|
120 |
Joanna W. Szopinska, Raphaële Gresse, Saskia van der Marel, Jos Boekhorst, Sabina Lukovac, Iris van Swam, Barbara Franke, Harro Timmerman, Clara Belzer, Alejandro Arias Vasquez. Reliability of a participant-friendly fecal collection method for microbiome analyses: a step towards large sample size investigation. BMC Microbiology 2018; 18(1) doi: 10.1186/s12866-018-1249-x
|
121 |
Fiona J. Whelan, Barbara Waddell, Saad A. Syed, Shahrokh Shekarriz, Harvey R. Rabin, Michael D. Parkins, Michael G. Surette. Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota. Nature Microbiology 2020; 5(2): 379 doi: 10.1038/s41564-019-0643-y
|
122 |
Anindita Mitra, Soumya Chatterjee, Dharmendra K. Gupta. Arsenic Water Resources Contamination. Advances in Water Security 2020; : 103 doi: 10.1007/978-3-030-21258-2_5
|
123 |
Timo A. Thumann, Eva-Maria Pferschy-Wenzig, Christine Moissl-Eichinger, Rudolf Bauer. The role of gut microbiota for the activity of medicinal plants traditionally used in the European Union for gastrointestinal disorders. Journal of Ethnopharmacology 2019; 245: 112153 doi: 10.1016/j.jep.2019.112153
|
124 |
Estela Salagre, Eduard Vieta, Iria Grande. El cerebro visceral: trastorno bipolar y microbiota. Revista de Psiquiatría y Salud Mental 2017; 10(2): 67 doi: 10.1016/j.rpsm.2017.02.001
|
125 |
Sama Rezasoltani, Dorrieh Ahmadi Bashirzadeh, Ehsan Nazemalhosseini Mojarad, Hamid Asadzadeh Aghdaei, Mohsen Norouzinia, Shabnam Shahrokh. Signature of Gut Microbiome by Conventional and Advanced Analysis Techniques: Advantages and Disadvantages. Middle East Journal of Digestive Diseases 2019; 12(1): 5 doi: 10.15171/mejdd.2020.157
|
126 |
Utkarsh Sood, Vipin Gupta, Roshan Kumar, Sukanya Lal, Derek Fawcett, Supriya Rattan, Gerrard Eddy Jai Poinern, Rup Lal. Chicken Gut Microbiome and Human Health: Past Scenarios, Current Perspectives, and Futuristic Applications. Indian Journal of Microbiology 2020; 60(1): 2 doi: 10.1007/s12088-019-00785-2
|
127 |
Liang-Jen Wang, Chia-Yu Yang, Wen-Jiun Chou, Min-Jing Lee, Miao-Chun Chou, Ho-Chang Kuo, Yuan-Ming Yeh, Sheng-Yu Lee, Lien-Hung Huang, Sung-Chou Li. Gut microbiota and dietary patterns in children with attention-deficit/hyperactivity disorder. European Child & Adolescent Psychiatry 2020; 29(3): 287 doi: 10.1007/s00787-019-01352-2
|
128 |
Prasoon Kumar, Rajeshwari Sinha, Pratyoosh Shukla. Artificial intelligence and synthetic biology approaches for human gut microbiome. Critical Reviews in Food Science and Nutrition 2022; 62(8): 2103 doi: 10.1080/10408398.2020.1850415
|
129 |
S. S. Al-Shehri, E. L. Sweeney, D. M. Cowley, H. G. Liley, P. D. Ranasinghe, B. G. Charles, P. N. Shaw, D. Vagenas, J. A. Duley, C. L. Knox. Deep sequencing of the 16S ribosomal RNA of the neonatal oral microbiome: a comparison of breast-fed and formula-fed infants. Scientific Reports 2016; 6(1) doi: 10.1038/srep38309
|
130 |
Goutam Chowdhury, T. Ramamurthy. Antimicrobial Resistance. 2020; : 53 doi: 10.1007/978-981-15-3658-8_3
|
131 |
Quang Vo Nguyen, Li Chuin Chong, Yan-Yan Hor, Lee-Ching Lew, Irfan A. Rather, Sy-Bing Choi. Role of Probiotics in the Management of COVID-19: A Computational Perspective. Nutrients 2022; 14(2): 274 doi: 10.3390/nu14020274
|
132 |
Maya Raman, Padma Ambalam, Mukesh Doble. Probiotics and Bioactive Carbohydrates in Colon Cancer Management. 2016; : 1 doi: 10.1007/978-81-322-2586-7_1
|
133 |
Nur Syafika Mohd-Yusof, Muhammad Abu Bakar Abdul-Latiff, Abd Rahman Mohd-Ridwan, Aqilah Sakinah Badrulisham, Nursyuhada Othman, Salmah Yaakop, Shukor Md-Nor, Badrul Munir Md-Zain. First report on metabarcoding analysis of gut microbiome in Island Flying Fox (Pteropus hypomelanus) in island populations of Malaysia. Biodiversity Data Journal 2022; 10 doi: 10.3897/BDJ.10.e69631
|
134 |
Ashfaque Hossain, Godfred Menezes, Mohammad Al, Ibraheem Ashankyty. Food Toxicology. 2016; : 491 doi: 10.1201/9781315371443-25
|
135 |
Ciara M. O’Donovan, Orla O’Sullivan, Paul D. Cotter. Comprehensive Biotechnology. 2018; : 629 doi: 10.1016/B978-0-12-809633-8.09233-5
|
136 |
H. Astudillo-de la Vega, O. Alonso-Luna, J. Ali-Pérez, C. López-Camarillo, E. Ruiz-Garcia. Translational Research and Onco-Omics Applications in the Era of Cancer Personal Genomics. Advances in Experimental Medicine and Biology 2019; 1168: 147 doi: 10.1007/978-3-030-24100-1_10
|
137 |
Florian Plaza Oñate, Emmanuelle Le Chatelier, Mathieu Almeida, Alessandra C L Cervino, Franck Gauthier, Frédéric Magoulès, S Dusko Ehrlich, Matthieu Pichaud, Jonathan Wren. MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data. Bioinformatics 2019; 35(9): 1544 doi: 10.1093/bioinformatics/bty830
|
138 |
Ted George O Achufusi, Anuj Sharma, Ernesto A Zamora, Divey Manocha. Small Intestinal Bacterial Overgrowth: Comprehensive Review of Diagnosis, Prevention, and Treatment Methods. Cureus 2020; doi: 10.7759/cureus.8860
|
139 |
Gelio Alves, Guanghui Wang, Aleksey Y. Ogurtsov, Steven K. Drake, Marjan Gucek, David B. Sacks, Yi-Kuo Yu. Rapid Classification and Identification of Multiple Microorganisms with Accurate Statistical Significance via High-Resolution Tandem Mass Spectrometry. Journal of the American Society for Mass Spectrometry 2018; 29(8): 1721 doi: 10.1007/s13361-018-1986-y
|
140 |
Tasha M. Santiago-Rodriguez, Raul Cano, Rafael Jiménez-Flores. Potential applications of metagenomics to assess the biological effects of food structure and function. Food & Function 2016; 7(10): 4160 doi: 10.1039/C6FO00317F
|
141 |
Pilar Calo-Mata, Jose Manuel Ageitos, Karola Böhme, Jorge Barros-Velázquez. New Weapons to Control Bacterial Growth. 2016; : 281 doi: 10.1007/978-3-319-28368-5_12
|
142 |
Matthias Willmann, Silke Peter. Translational metagenomics and the human resistome: confronting the menace of the new millennium. Journal of Molecular Medicine 2017; 95(1): 41 doi: 10.1007/s00109-016-1478-0
|
143 |
Ting-Chin David Shen, Nikolaos Pyrsopoulos, Vinod K. Rustgi. Microbiota and the liver. Liver Transplantation 2018; 24(4): 539 doi: 10.1002/lt.25008
|
144 |
Marines du Teil Espina, Giorgio Gabarrini, Hermie J M Harmsen, Johanna Westra, Arie Jan van Winkelhoff, Jan Maarten van Dijl. Talk to your gut: the oral-gut microbiome axis and its immunomodulatory role in the etiology of rheumatoid arthritis. FEMS Microbiology Reviews 2019; 43(1): 1 doi: 10.1093/femsre/fuy035
|
145 |
Caterina Foppa, Siew Chien Ng, Marco Montorsi, Antonino Spinelli. Anastomotic leak in colorectal cancer patients: New insights and perspectives. European Journal of Surgical Oncology 2020; 46(6): 943 doi: 10.1016/j.ejso.2020.02.027
|
146 |
Rajpal Srivastav, Garima Suneja. Microbial Genomics in Sustainable Agroecosystems. 2019; : 131 doi: 10.1007/978-981-32-9860-6_8
|
147 |
Natalia Molinero, Carlos Sabater, Inés Calvete, Susana Delgado, Patricia Ruas-Madiedo, Lorena Ruiz, Abelardo Margolles. Comprehensive Gut Microbiota. 2022; : 84 doi: 10.1016/B978-0-12-819265-8.00095-4
|
148 |
Yorick Janssens, Joachim Nielandt, Antoon Bronselaer, Nathan Debunne, Frederick Verbeke, Evelien Wynendaele, Filip Van Immerseel, Yves-Paul Vandewynckel, Guy De Tré, Bart De Spiegeleer. Disbiome database: linking the microbiome to disease. BMC Microbiology 2018; 18(1) doi: 10.1186/s12866-018-1197-5
|
149 |
Borja Sánchez, Susana Delgado, Aitor Blanco-Míguez, Anália Lourenço, Miguel Gueimonde, Abelardo Margolles. Probiotics, gut microbiota, and their influence on host health and disease. Molecular Nutrition & Food Research 2017; 61(1): 1600240 doi: 10.1002/mnfr.201600240
|
150 |
Petar Tonkovic, Slobodan Kalajdziski, Eftim Zdravevski, Petre Lameski, Roberto Corizzo, Ivan Miguel Pires, Nuno M. Garcia, Tatjana Loncar-Turukalo, Vladimir Trajkovik. Literature on Applied Machine Learning in Metagenomic Classification: A Scoping Review. Biology 2020; 9(12): 453 doi: 10.3390/biology9120453
|
151 |
Ian F. Akyildiz, Jiande Chen, Maysam Ghovanloo, Ulkuhan Guler, Tevhide Ozkaya-Ahmadov, Massimiliano Pierobon, A. Fatih Sarioglu, Bige D. Unluturk. Microbiome-Gut-Brain Axis as a Biomolecular Communication Network for the Internet of Bio-NanoThings. IEEE Access 2019; 7: 136161 doi: 10.1109/ACCESS.2019.2942312
|
152 |
Xiao-wei Feng, Wen-ping Ding, Ling-yun Xiong, Liang Guo, Jia-ming Sun, Peng Xiao. Recent Advancements in Intestinal Microbiota Analyses: A Review for Non-Microbiologists. Current Medical Science 2018; 38(6): 949 doi: 10.1007/s11596-018-1969-z
|
153 |
Farah Shahi, Kelly Redeker, James Chong. Rethinking antimicrobial stewardship paradigms in the context of the gut microbiome. JAC-Antimicrobial Resistance 2019; 1(1) doi: 10.1093/jacamr/dlz015
|
154 |
Shuming Mo, Jinhui Li, Bin Li, Muhammad Kashif, Shiqing Nie, Jianping Liao, Guijiao Su, Qiong Jiang, Bing Yan, Chengjian Jiang. L-Cysteine Synthase Enhanced Sulfide Biotransformation in Subtropical Marine Mangrove Sediments as Revealed by Metagenomics Analysis. Water 2021; 13(21): 3053 doi: 10.3390/w13213053
|
155 |
S. I. Sitkin, T. Ya. Vakhitov, E. V. Demyanova. Microbiome, gut dysbiosis and inflammatory bowel disease: That moment when the function is more important than taxonomy. Almanac of Clinical Medicine 2018; 46(5): 396 doi: 10.18786/2072-0505-2018-46-5-396-425
|
156 |
Reena Kumari, Senthilnathan Palaniyandi, Gerhard Carl Hildebrandt. Microbiome: An Emerging New Frontier in Graft-Versus-Host Disease. Digestive Diseases and Sciences 2019; 64(3): 669 doi: 10.1007/s10620-018-5369-9
|
157 |
Marie Binvignat, Harry Sokol, Encarnita Mariotti-Ferrandiz, Francis Berenbaum, Jérémie Sellam. Osteoarthritis and gut microbiome. Joint Bone Spine 2021; 88(5): 105203 doi: 10.1016/j.jbspin.2021.105203
|
158 |
Eamonn M.M. Quigley. Basic Definitions and Concepts: Organization of the Gut Microbiome. Gastroenterology Clinics of North America 2017; 46(1): 1 doi: 10.1016/j.gtc.2016.09.002
|
159 |
Y. Seesao, M. Gay, S. Merlin, E. Viscogliosi, C.M. Aliouat-Denis, C. Audebert. A review of methods for nematode identification. Journal of Microbiological Methods 2017; 138: 37 doi: 10.1016/j.mimet.2016.05.030
|
160 |
Gaud Catho, Benedikt D Huttner. Strategies for the eradication of extended-spectrum beta-lactamase or carbapenemase-producing Enterobacteriaceae intestinal carriage. Expert Review of Anti-infective Therapy 2019; 17(8): 557 doi: 10.1080/14787210.2019.1645007
|
161 |
Manoj Kumar Verma, Vasim Ahmed, Shashank Gupta, Jitendra Kumar, Rajesh Pandey, Vibha Mandhan, Nar Singh Chauhan. Functional metagenomics identifies novel genes ABCTPP, TMSRP1 and TLSRP1 among human gut enterotypes. Scientific Reports 2018; 8(1) doi: 10.1038/s41598-018-19862-5
|
162 |
Efrat L. Amitay, Agne Krilaviciute, Hermann Brenner. Systematic review: Gut microbiota in fecal samples and detection of colorectal neoplasms. Gut Microbes 2018; : 1 doi: 10.1080/19490976.2018.1445957
|
163 |
Jean Pierre Rutanga, Sandra Van Puyvelde, Anne-Sophie Heroes, Claude Mambo Muvunyi, Jan Jacobs, Stijn Deborggraeve. 16S metagenomics for diagnosis of bloodstream infections: opportunities and pitfalls. Expert Review of Molecular Diagnostics 2018; 18(8): 749 doi: 10.1080/14737159.2018.1498786
|
164 |
Estela Salagre, Eduard Vieta, Iria Grande. The visceral brain: Bipolar disorder and microbiota. Revista de Psiquiatría y Salud Mental (English Edition) 2017; 10(2): 67 doi: 10.1016/j.rpsmen.2017.02.005
|
165 |
Jan-Ulrich Kreft, Caroline M. Plugge, Clara Prats, Johan H. J. Leveau, Weiwen Zhang, Ferdi L. Hellweger. From Genes to Ecosystems in Microbiology: Modeling Approaches and the Importance of Individuality. Frontiers in Microbiology 2017; 8 doi: 10.3389/fmicb.2017.02299
|
166 |
Shahd Ezzeldin, Aya El-Wazir, Shymaa Enany, Abdelrahman Muhammad, Dina Johar, Aya Osama, Eman Ahmed, Hassan Shikshaky, Sameh Magdeldin. Current Understanding of Human Metaproteome Association and Modulation. Journal of Proteome Research 2019; 18(10): 3539 doi: 10.1021/acs.jproteome.9b00301
|
167 |
Jose E. Martínez, Augusto Vargas, Tania Pérez-Sánchez, Ignacio J. Encío, Miriam Cabello-Olmo, Miguel Barajas. Human Microbiota Network: Unveiling Potential Crosstalk between the Different Microbiota Ecosystems and Their Role in Health and Disease. Nutrients 2021; 13(9): 2905 doi: 10.3390/nu13092905
|
168 |
Mariam Doualeh, Matthew Payne, Edward Litton, Edward Raby, Andrew Currie. Molecular Methodologies for Improved Polymicrobial Sepsis Diagnosis. International Journal of Molecular Sciences 2022; 23(9): 4484 doi: 10.3390/ijms23094484
|
169 |
Huafeng Lin, Qing-Yu He, Lei Shi, Mark Sleeman, Mark S. Baker, Edouard C. Nice. Proteomics and the microbiome: pitfalls and potential. Expert Review of Proteomics 2019; 16(6): 501 doi: 10.1080/14789450.2018.1523724
|
170 |
Thierry Pédron, Giulia Nigro, Philippe J. Sansonetti. From homeostasis to pathology: decrypting microbe–host symbiotic signals in the intestinal crypt. Philosophical Transactions of the Royal Society B: Biological Sciences 2016; 371(1707): 20150500 doi: 10.1098/rstb.2015.0500
|
171 |
Hyun Kim, Yong-Hwan Lee. The Rice Microbiome: A Model Platform for Crop Holobiome. Phytobiomes Journal 2020; 4(1): 5 doi: 10.1094/PBIOMES-07-19-0035-RVW
|
172 |
Samuel T. Westreich, Jaime Salcedo, Blythe Durbin-Johnson, Jennifer T. Smilowitz, Ian Korf, David A. Mills, Daniela Barile, Danielle G. Lemay. Fecal metatranscriptomics and glycomics suggest that bovine milk oligosaccharides are fully utilized by healthy adults. The Journal of Nutritional Biochemistry 2020; 79: 108340 doi: 10.1016/j.jnutbio.2020.108340
|
173 |
Rohan M. Shah, Elizabeth J. McKenzie, Magda T. Rosin, Snehal R. Jadhav, Shakuntla V. Gondalia, Douglas Rosendale, David J. Beale. An Integrated Multi-Disciplinary Perspective for Addressing Challenges of the Human Gut Microbiome. Metabolites 2020; 10(3): 94 doi: 10.3390/metabo10030094
|
174 |
Yuanfeng Liu, Xiang Li, Yudie Yang, Ye Liu, Shijun Wang, Boyang Ji, Yongjun Wei. Exploring Gut Microbiota in Patients with Colorectal Disease Based on 16S rRNA Gene Amplicon and Shallow Metagenomic Sequencing. Frontiers in Molecular Biosciences 2021; 8 doi: 10.3389/fmolb.2021.703638
|
175 |
Lusine Khachatryan, Rick H. de Leeuw, Margriet E.M. Kraakman, Nikos Pappas, Marije te Raa, Hailiang Mei, Peter de Knijff, Jeroen F.J. Laros. Taxonomic classification and abundance estimation using 16S and WGS—A comparison using controlled reference samples. Forensic Science International: Genetics 2020; 46: 102257 doi: 10.1016/j.fsigen.2020.102257
|
176 |
Lucky T. Nesengani, Jun Wang, Yujiang Yang, Lianyu Yang, Wenfa Lu. Unravelling vaginal microbial genetic diversity and abundance between Holstein and Fleckvieh cattle. RSC Advances 2017; 7(88): 56137 doi: 10.1039/C7RA10553C
|
177 |
Pamela A. McCombe, Robert D. Henderson, Aven Lee, John D. Lee, Trent M. Woodruff, Restuadi Restuadi, Allan McRae, Naomi R. Wray, Shyuan Ngo, Frederik J. Steyn. Gut microbiota in ALS: possible role in pathogenesis?. Expert Review of Neurotherapeutics 2019; 19(9): 785 doi: 10.1080/14737175.2019.1623026
|
178 |
Toral Manvar, Vijay Lakhujani. Encyclopedia of Bioinformatics and Computational Biology. 2019; : 200 doi: 10.1016/B978-0-12-809633-8.20503-7
|
179 |
Zenon Zduńczyk. Functioning of the Intestinal Ecosystem: From New Technologies in Microbial Research to Practical Poultry Feeding – A Review. Annals of Animal Science 2019; 19(2): 239 doi: 10.2478/aoas-2019-0007
|
180 |
Samuel Anyaso-Samuel, Archie Sachdeva, Subharup Guha, Somnath Datta. Statistical Analysis of Microbiome Data. Frontiers in Probability and the Statistical Sciences 2021; : 45 doi: 10.1007/978-3-030-73351-3_3
|
181 |
Anukriti Sharma, Rup Lal. Survey of (Meta)genomic Approaches for Understanding Microbial Community Dynamics. Indian Journal of Microbiology 2017; 57(1): 23 doi: 10.1007/s12088-016-0629-x
|
182 |
Mudra Khare, Dhiraj Sinha, Rita Zgheib, Sory Ibrahima Traore, Jean-Christophe Lagier, Didier Raoult, Pierre-Edouard Fournier. Genomic description and characterization of Nigeribacterium massiliense gen. nov., sp. nov., isolated from the human gut. Microbes and Infection 2021; 23(8): 104842 doi: 10.1016/j.micinf.2021.104842
|
183 |
Hayato Takihara, Nobuaki Miura, Kiyoko F. Aoki-Kinoshita, Shujiro Okuda. Functional glyco-metagenomics elucidates the role of glycan-related genes in environments. BMC Bioinformatics 2021; 22(1) doi: 10.1186/s12859-021-04425-9
|
184 |
Xiaoyang Wu, Huanxin Zhang, Jun Chen, Shuai Shang, Jiakuo Yan, Yao Chen, Xuexi Tang, Honghai Zhang. Analysis and comparison of the wolf microbiome under different environmental factors using three different data of Next Generation Sequencing. Scientific Reports 2017; 7(1) doi: 10.1038/s41598-017-11770-4
|