Basic Study
Copyright ©The Author(s) 2024.
World J Gastroenterol. Mar 28, 2024; 30(12): 1764-1776
Published online Mar 28, 2024. doi: 10.3748/wjg.v30.i12.1764
Table 1 Primer sequences for qPCR
Genes
Sequence
ALKBH5Forward 5’- CTTTGCTTCGGCTGCAAGTT -3’
Reverse 5’- CCGGCGTTCCTTAATGTCCT -3’
ZKSCAN3Forward 5’- CAGAGTAGGGTGGAAAGCC -3’
Reverse 5’- AAGGTATGAAGGTCGGGTG -3’
Primer 1Forward 5’- CCAGGCGGTTCTATTGC -3’
Reverse 5’- TGGCTTTCCACCCTACTCT -3’
Primer 2Forward: 5’- CAGAGTAGGGTGGAAAGCC-3’
Reverse 5’- AGGTATGAAGGTCGGGTG-3’
Primer 3Forward 5’- TGGTTCGGGATGGCTAG-3’
Reverse 5’- AACAGCACTGCCTTGGAG-3’
β-actinForward 5’- GTGGCCGAGGACTTTGATTG-3’
Reverse 5’- CCTGTAACAACGCATCTCATATT-3’
Table 2 m6A sites of ZKSCAN3 mRNA
Number
Position
Sequence context
Confidence
134GUGCCCCGCCCCCCGGGGUCGGACUUUCGACACUUUUGUGACUGCHigh
2131ACAGCUACAGUGAAACGGGAGAACUGCUUGGUUCGGGAUGGCUAGHigh
3180UCAAGGGAAAGCACAACCUUGGACUCACACUCUGCAGAGGACCAGVery high
4198UUGGACUCACACUCUGCAGAGGACCAGAUGGAGCUACUGGUCAUAHigh
5229AGCUACUGGUCAUAAAGGUGGAACAAGAAGAGGCCUCCCCCUUGGModerate
6534GUGGCGCUGCUGGAGUACUUGGACAGGCAGCUGGAUGACACACCUHigh
7589CAGAUGAUGACGAUGGGCAGGAACUCCUUUGCUCCAAGGCAGUGCModerate
8824CCCAGUCCUUUCCCCCAGAUGGACAGAGCAGGAUUCAUCUCAGAUVery high
9849GAGCAGGAUUCAUCUCAGAUGAACCUCUACAAAGAUGGAAUGCAGModerate
10906AGCCUGGUUUCCCUGGAUCAGGACAUGCAGACUAAGGUUAGGGACVery high
11914UUCCCUGGAUCAGGACAUGCAGACUAAGGUUAGGGACUUGCCUCGModerate
12927GACAUGCAGACUAAGGUUAGGGACUUGCCUCGAGCUGAAGAAUACVery high
13954CCUCGAGCUGAAGAAUACAGGGACCAAAAGCCUGAGCAGACAGUGHigh
14971CAGGGACCAAAAGCCUGAGCAGACAGUGUGCUUCCUGGGUGAAGALow
15993ACAGUGUGCUUCCUGGGUGAAGACACUGUCCCGAUUCCUACAGGULow
161347GAAAAGCCCUACGAGUGUGAUGACUGUGGGAAAACCUUCACUCAGHigh
171387CUCAGAGCUGCAGCCUCCUUGAACAUCACAGAAUUCACACUGGGGLow
181471GGCGUAGCUCACAUCUUCUGAGACAUCAGAGGACCCAUACUGGGGModerate
191633GUAGGAUUACAAGCCUUAUUGAACACCAAAAAGUACACACUGGUGLow
201745GAGAAGACACACGGGGAAGAAAACUUCUGUCACAGUGACCCCUGCModerate
211803GUUGGUGUUCAACUGUCAUUGAACUGAAGCCACUCUGUAGUUCUUHigh
221830AGCCACUCUGUAGUUCUUAAUGACUGCAGAAGUCAUAGGCUGGGGVery high
231985ACAAGAGUCCUCACCCAUUGGAACUAAAUGGGCUUCCUGACUGUCVery high