Basic Study
Copyright ©The Author(s) 2022.
World J Gastroenterol. May 7, 2022; 28(17): 1814-1829
Published online May 7, 2022. doi: 10.3748/wjg.v28.i17.1814
Table 1 Initiators of the phylum or class of microorganisms of gut microbiota
Phylum or class
Forward initiator
Reverse initiator
Eubacteria (All Bacteria)[5’-ACTCCTACGGGAGGCAGAGT-3’] [5’-ATTACCGCGGCTGCTGGC-3’]
Bacteroidetes[5’-CRAACAGGATTAGATACCCT-3’] [5’-GGTAAGGTTCCTCGCGTAT-3’]
Firmicutes[5’-TGAAACTYAAAGGAATTGACG-3’] [5’-ACCATGCACCACCTGTC-3’]
Actinobacteria[5’-TACGGCCGCAAGGCTA-3’][5’-TCRTCCCCACCTTCCTCCG-3’]
Class-γ-Proteobacteria[5’-TCGTCAGCTCGTGTYGTGA -3’] [5’-CGTAAGGGCCATGATG-3’]
Table 2 Forward and reverse sequences of real-time reverse transcriptase–polymerase chain reaction primers–liver
Gene
5’-3’ Left
3’-5’ Right
LbpGGTGGCTGCTGAATCTCTTCTCTGCTGTGACTGGCAGAGT
Tlr4 GCCGGAAGGTTATTGTGGTAGAAACTGCCATGTTTGAGCA
Nlrp3 ATGCTGCTTCGACATCTCCTGTTTCTGGAGGTTGCAGAGC
Cd206 CAAGGAAGGTTGGCATTTGTCCTTTCAGTCCTTTGCAAGC
IL-10 GCCTTATCGGAAATGATCCATCCTGAGGGTCTTCAGCTTC
IL-13CTGGATTCCCTGACCAACATGGTTACAGAGGCCATGCAAT
Beta-actinTGTTACCAACTGGGACGACAGGGGTGTTGAAGGTCTCAAA
Table 3 Forward and reverse sequences of real-time reverse transcriptase–polymerase chain reaction primers–intestine
Gene
5’-3’ Left
3’-5’ Right
Mucin2GTAGTTTCCGTTGGAACAGTGAAATGCCCACCTCCTCAAAGAC
OccludinCCTTCTGCTTCATCGCTTCCAGCGCTGACTATGATCACGA
Zo-1TCAGAGCCCTCCGATCATTCGCTTTGGGTGGATGATCGTC
Tlr4GCCGGAAGGTTATTGTGGTAGAAACTGCCATGTTTGAGCA
GapdhCATCACTGCCACCCAGAAGACTGATGCCAGTGAGCTTCCCGTTCAG