Basic Study
Copyright ©The Author(s) 2016.
World J Gastroenterol. Oct 14, 2016; 22(38): 8528-8539
Published online Oct 14, 2016. doi: 10.3748/wjg.v22.i38.8528
Table 1 Primer sequences used in quantitative real-time polymerase chain reaction for detection of stem cell marker mRNA expression
GeneSequence
CD133-F5’ TTTGTCTTCTATTCTTGGCTTC 3’
CD133-R5’ ACCTTGTCATAATCAATTTTGG 3’
CD44-F5’ GGTTCATAGAAGGGCACGT 3’
CD44-R5’ TGTCTTCGTCTGGGATGG 3’
CD24-F5’ TCAAGTATTTGGGAAGTG 3’
CD24-R5’ GTGTTCTAAATGTGGCTAT 3’
OCT3/4-F5’ CGACCATCTGCCGCTTTGAG 3’
OCT3/4-R5’ CCCCCTGTCCCCCATTCCTA 3’
KLF4-F5’ TGGGTCTTGAGGAAGTGCTG 3’
KLF4-R5’ TGTTTACGGTAGTGCCTGGTC 3’
SOX2-F5’ CACCTACAGCATGTCCTACTC 3’
SOX2-R5’ CATGCTGTTTCTTACTCTCCTC 3’
PRL-1-F5’ GGCAAACTTCGAGTCTCCT 3’
PRL-1-R5’ CCGGTTGATGAATGGCTAA 3’
MEIS2-F5’ GTCCACGAACTGTGCGATAA 3’
MEIS2-R5’ TTCGGAAGGGTACGGATG 3’
AXIN2-F5’ AGCATTTTAATCAACAGCATCTA 3’
AXIN2-R5’ TAACTAAGAATGTGATCCAAGAA 3’
NANOG-F5’ CAACTGGCCGAAGAATAGCA 3’
NANOG-R5’ GCAGGAGAATTTGGCTGGAA 3’
GAPDH-F5’ GGAGCGAGATCCCTCCAAAAT 3’
GAPDH-R5’ GGCTGTTGTCATACTTCTCATGG 3’
Table 2 Primer sequences used in polymerase chain reaction for detecting genomic binding sites for stem cell markers
GeneSequence
CD133-F5’ TTTGTCTTCTATTCTTGGCTTC 3’
CD133-R5’ ACCTTGTCATAATCAATTTTGG 3’
CD44(1)-F5’ CTCATGGCTCAGTCGCCCAATCA 3’
CD44(1)-R5’ TTTGCTCCTGAGCTGTTGCGTGG 3’
CD44(2)-F5’ AGATTAAGGAGCTAGGACTC 3’
CD44(2)-R5’ AAGATCACTTGGCAAGAAAG 3’
CD44(3)-F5’ GGCACGTGTGAAACCTTTCCATTC 3’
CD44(3)-R5’ GCTGAGCTGGACGCCAAGCA 3’
CD44(4)-F5’ GCCTTTCATCCCTCGGGTGTGC 3’
CD44(4)-R5’ TTCCTCCCAGGGACCAGGCC 3’
MEIS2(1)-F5’ GGATTCCTGGCCAAAGGACGC 3’
MEIS2(1)-R5’ CTCCCCCTAAGAGCGGCTCCA 3’
MEIS2(2)-F5’ ACTGCCCGCAAGGATTCCACAA 3’
MEIS2(2)-R5’ GGACTGTGGACCAAATCCAGCACAG 3’
AXIN2-F5’ TATTCAAGGCATCTTTTACTGGAC 3’
AXIN2-R5’ AGCAAAGAACTAGCCAATAAGGAG 3’