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©The Author(s) 2015.
World J Gastroenterol. Jun 7, 2015; 21(21): 6684-6697
Published online Jun 7, 2015. doi: 10.3748/wjg.v21.i21.6684
Published online Jun 7, 2015. doi: 10.3748/wjg.v21.i21.6684
Table 1 Hepatitis B virus sequences with controversial genotype and/or sub-genotype results based on a direct reference from the Genbank sequence annotation
| Sequence ID | NCBI annotation | Online software Genotyping | MEGA5.0 softwarePhylogenetic tree |
| FJ386674 | C | B | B10 |
| EU939559 | C | B | B2 |
| GQ377630 | C4 | B | B2 |
| GQ377635 | C4 | B | B2 |
| AY217374 | B | C | C1 |
| EU939668 | B2 | C | C2 |
| GQ377556 | B | C | C2 |
| GQ377539 | B | C | C2 |
| GQ377590 | B | C | C2 |
| EU939630 | B2 | C | C2 |
| GQ377596 | B | C | C2 |
| GQ377614 | B | C | C2 |
| GQ377634 | B | C | C2 |
| GQ377604 | B | C | C2 |
| GQ377594 | B | C | C2 |
| GQ377602 | B | C | C2 |
| GQ377565 | B | C | C2 |
| GQ377631 | C1 | C | C2 |
| GQ377605 | C1 | C | C2 |
| GQ377573 | B | B | C2 |
| GQ377613 | B | B | C2 |
| GQ377549 | B | B | C2 |
| GQ377564 | B | B | C2 |
Table 2 Mean percentage of nucleotide divergence over the genome among hepatitis B virus isolates with controversial genotype and/or sub-genotype results
| A | B | C | D | E | F | G | H | I | J | |
| B | 0.10 ± 0.01 | |||||||||
| C | 0.10 ± 0.01 | 0.12 ± 0.00 | ||||||||
| D | 0.12 ± 0.01 | 0.13 ± 0.01 | 0.13 ± 0.01 | |||||||
| E | 0.11 ± 0.01 | 0.12 ± 0.01 | 0.13 ± 0.01 | 0.09 ± 0.01 | ||||||
| F | 0.15 ± 0.01 | 0.16 ± 0.01 | 0.15 ± 0.01 | 0.16 ± 0.01 | 0.15 ± 0.01 | |||||
| G | 0.14 ± 0.01 | 0.15 ± 0.01 | 0.15 ± 0.01 | 0.14 ± 0.01 | 0.13 ± 0.01 | 0.17 ± 0.02 | ||||
| H | 0.16 ± 0.02 | 0.16 ± 0.01 | 0.15 ± 0.01 | 0.16 ± 0.01 | 0.16 ± 0.01 | 0.10 ± 0.01 | 0.17 ± 0.02 | |||
| I | 0.09 ± 0.01 | 0.11 ± 0.01 | 0.08 ± 0.01 | 0.13 ± 0.01 | 0.12 ± 0.01 | 0.15 ± 0.01 | 0.14 ± 0.01 | 0.16 ± 0.01 | ||
| J | 0.14 ± 0.02 | 0.13 ± 0.01 | 0.13 ± 0.01 | 0.15 ± 0.02 | 0.14 ± 0.02 | 0.16 ± 0.02 | 0.16 ± 0.02 | 0.17 ± 0.02 | 0.13 ± 0.01 | |
| FJ386674 | 0.11 ± 0.01 | 0.06 ± 0.01 | 0.10 ± 0.01 | 0.14 ± 0.01 | 0.13 ± 0.01 | 0.16 ± 0.01 | 0.15 ± 0.01 | 0.17 ± 0.02 | 0.11 ± 0.01 | 0.13 ± 0.01 |
| B1 | B2 | B3 | B4 | B5 | B6 | B7 | B8 | B9 | ||
| B2 | 0.03 ± 0.00 | |||||||||
| B3 | 0.05 ± 0.01 | 0.05 ± 0.01 | ||||||||
| B4 | 0.04 ± 0.00 | 0.04 ± 0.00 | 0.05 ± 0.01 | |||||||
| B5 | 0.05 ± 0.01 | 0.05 ± 0.00 | 0.03 ± 0.00 | 0.05 ± 0.01 | ||||||
| B6 | 0.05 ± 0.01 | 0.05 ± 0.01 | 0.04 ± 0.00 | 0.06 ± 0.01 | 0.05 ± 0.01 | |||||
| B7 | 0.05 ± 0.01 | 0.05 ± 0.01 | 0.03 ± 0.00 | 0.05 ± 0.01 | 0.03 ± 0.00 | 0.04 ± 0.00 | ||||
| B8 | 0.05 ± 0.00 | 0.05 ± 0.00 | 0.03 ± 0.00 | 0.05 ± 0.00 | 0.03 ± 0.00 | 0.04 ± 0.01 | 0.03 ± 0.00 | |||
| B9 | 0.05 ± 0.01 | 0.05 ± 0.00 | 0.03 ± 0.00 | 0.05 ± 0.00 | 0.03 ± 0.00 | 0.05 ± 0.01 | 0.03 ± 0.00 | 0.03 ± 0.00 | ||
| FJ386674 | 0.05 ± 0.01 | 0.05 ± 0.00 | 0.07 ± 0.01 | 0.06 ± 0.01 | 0.07 ± 0.01 | 0.07 ± 0.01 | 0.07 ± 0.01 | 0.06 ± 0.01 | 0.06 ± 0.01 |
- Citation: Li HM, Wang JQ, Wang R, Zhao Q, Li L, Zhang JP, Shen T. Hepatitis B virus genotypes and genome characteristics in China. World J Gastroenterol 2015; 21(21): 6684-6697
- URL: https://www.wjgnet.com/1007-9327/full/v21/i21/6684.htm
- DOI: https://dx.doi.org/10.3748/wjg.v21.i21.6684