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For: Xiong J, Ren J, Luo L, Horowitz M. Mapping Histological Slice Sequences to the Allen Mouse Brain Atlas Without 3D Reconstruction. Front Neuroinform 2018;12:93. [PMID: 30618698 DOI: 10.3389/fninf.2018.00093] [Cited by in Crossref: 20] [Cited by in F6Publishing: 20] [Article Influence: 5.0] [Reference Citation Analysis]
Number Citing Articles
1 Douros IK, Xie Y, Dourou C, Isaieva K, Vuissoz P, Felblinger J, Laprie Y. 3D Dynamic Spatiotemporal Atlas of the Vocal Tract during Consonant–Vowel Production from 2D Real Time MRI. J Imaging 2022;8:227. [DOI: 10.3390/jimaging8090227] [Reference Citation Analysis]
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4 Sadeghi M, Neto P, Ramos-prats A, Castaldi F, Paradiso E, Mahmoodian N, Ferraguti F, Goebel G. Automatic 2D to 3D localization of histological mouse brain sections in the reference atlas using deep learning. Medical Imaging 2022: Image Processing 2022. [DOI: 10.1117/12.2604231] [Reference Citation Analysis]
5 Wu D, Richards LJ, Zhao Z, Cao Z, Luo W, Shao W, Shi SH, Miller MI, Mori S, Blackshaw S, Zhang J. A diffusion MRI-based spatiotemporal continuum of the embryonic mouse brain for probing gene-neuroanatomy connections. Proc Natl Acad Sci U S A 2022;119:e2111869119. [PMID: 35165149 DOI: 10.1073/pnas.2111869119] [Reference Citation Analysis]
6 Antanavicius J, Leiras R, Selvan R. Identifying Partial Mouse Brain Microscopy Images from the Allen Reference Atlas Using a Contrastively Learned Semantic Space. Biomedical Image Registration 2022. [DOI: 10.1007/978-3-031-11203-4_18] [Reference Citation Analysis]
7 Arefin TM, Lee CH, White JD, Zhang J, Kaffman A. Macroscopic Structural and Connectome Mapping of the Mouse Brain Using Diffusion Magnetic Resonance Imaging. Bio Protoc 2021;11:e4221. [PMID: 34909442 DOI: 10.21769/BioProtoc.4221] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
8 Piluso S, Souedet N, Jan C, Clouchoux C, Delzescaux T. Automated Atlas-based Segmentation of Single Coronal Mouse Brain Slices using Linear 2D-2D Registration. 2021 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) 2021. [DOI: 10.1109/embc46164.2021.9631097] [Reference Citation Analysis]
9 Krepl J, Casalegno F, Delattre E, Erö C, Lu H, Keller D, Rodarie D, Markram H, Schürmann F. Supervised Learning With Perceptual Similarity for Multimodal Gene Expression Registration of a Mouse Brain Atlas. Front Neuroinform 2021;15:691918. [PMID: 34393747 DOI: 10.3389/fninf.2021.691918] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
10 Tian S, Hou Z, Zuo X, Xiong W, Huang G. Automatic Registration of the Mass Spectrometry Imaging Data of Sagittal Brain Slices to the Reference Atlas. J Am Soc Mass Spectrom 2021;32:1789-97. [PMID: 34096712 DOI: 10.1021/jasms.1c00137] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 2.0] [Reference Citation Analysis]
11 Khalesi R, Razmara E, Asgaritarghi G, Tavasoli AR, Riazalhosseini Y, Auld D, Garshasbi M. Novel manifestations of Warburg micro syndrome type 1 caused by a new splicing variant of RAB3GAP1: a case report. BMC Neurol 2021;21:180. [PMID: 33910511 DOI: 10.1186/s12883-021-02204-w] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
12 Lee NC, Peng WH, Tsai LK, Lu YH, Wang HC, Shih YC, Pung ZX, Hu HY, Hwu WL, Tseng WI, Chien YH. Ultrastructural and diffusion tensor imaging studies reveal axon abnormalities in Pompe disease mice. Sci Rep 2020;10:20239. [PMID: 33214573 DOI: 10.1038/s41598-020-77193-w] [Reference Citation Analysis]
13 Groeneboom NE, Yates SC, Puchades MA, Bjaalie JG. Nutil: A Pre- and Post-processing Toolbox for Histological Rodent Brain Section Images. Front Neuroinform 2020;14:37. [PMID: 32973479 DOI: 10.3389/fninf.2020.00037] [Cited by in Crossref: 7] [Cited by in F6Publishing: 10] [Article Influence: 3.5] [Reference Citation Analysis]
14 Wang Q, Ding SL, Li Y, Royall J, Feng D, Lesnar P, Graddis N, Naeemi M, Facer B, Ho A, Dolbeare T, Blanchard B, Dee N, Wakeman W, Hirokawa KE, Szafer A, Sunkin SM, Oh SW, Bernard A, Phillips JW, Hawrylycz M, Koch C, Zeng H, Harris JA, Ng L. The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas. Cell 2020;181:936-953.e20. [PMID: 32386544 DOI: 10.1016/j.cell.2020.04.007] [Cited by in Crossref: 244] [Cited by in F6Publishing: 275] [Article Influence: 122.0] [Reference Citation Analysis]
15 Liang Z, Lee CH, Arefin TM, Dong Z, Walczak P, Shi S, Knoll F, Ge Y, Ying L, Zhang J. Virtual Mouse Brain Histology from Multi-contrast MRI via Deep Learning.. [DOI: 10.1101/2020.05.01.072561] [Reference Citation Analysis]
16 Tward D, Li X, Huo B, Lee B, Miller MI, Mitra PP. Solving the where problem in neuroanatomy: a generative framework with learned mappings to register multimodal, incomplete data into a reference brain.. [DOI: 10.1101/2020.03.22.002618] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
17 Yates SC, Groeneboom NE, Coello C, Lichtenthaler SF, Kuhn PH, Demuth HU, Hartlage-Rübsamen M, Roßner S, Leergaard T, Kreshuk A, Puchades MA, Bjaalie JG. QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Front Neuroinform 2019;13:75. [PMID: 31849633 DOI: 10.3389/fninf.2019.00075] [Cited by in Crossref: 16] [Cited by in F6Publishing: 18] [Article Influence: 5.3] [Reference Citation Analysis]
18 Lefebvre J, Delafontaine-martel P, Lesage F. A Review of Intrinsic Optical Imaging Serial Blockface Histology (ICI-SBH) for Whole Rodent Brain Imaging. Photonics 2019;6:66. [DOI: 10.3390/photonics6020066] [Cited by in Crossref: 1] [Article Influence: 0.3] [Reference Citation Analysis]
19 Tward D, Li X, Huo B, Lee B, Mitra P, Miller M. 3D Mapping of Serial Histology Sections with Anomalies Using a Novel Robust Deformable Registration Algorithm. Multimodal Brain Image Analysis and Mathematical Foundations of Computational Anatomy 2019. [DOI: 10.1007/978-3-030-33226-6_18] [Cited by in Crossref: 4] [Article Influence: 1.3] [Reference Citation Analysis]