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For: Becerra A, Bucheli VA, Moreno PA. Prediction of virus-host protein-protein interactions mediated by short linear motifs. BMC Bioinformatics 2017;18:163. [PMID: 28279163 DOI: 10.1186/s12859-017-1570-7] [Cited by in Crossref: 27] [Cited by in F6Publishing: 23] [Article Influence: 5.4] [Reference Citation Analysis]
Number Citing Articles
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2 Halder AK, Dutta P, Kundu M, Basu S, Nasipuri M. Review of computational methods for virus-host protein interaction prediction: a case study on novel Ebola-human interactions. Brief Funct Genomics 2018;17:381-91. [PMID: 29028879 DOI: 10.1093/bfgp/elx026] [Cited by in Crossref: 5] [Cited by in F6Publishing: 2] [Article Influence: 1.7] [Reference Citation Analysis]
3 Lian X, Yang X, Yang S, Zhang Z. Current status and future perspectives of computational studies on human-virus protein-protein interactions. Brief Bioinform 2021:bbab029. [PMID: 33693490 DOI: 10.1093/bib/bbab029] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
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5 Wadie B, Kleshchevnikov V, Sandaltzopoulou E, Benz C, Petsalaki E. Use of viral motif mimicry improves the proteome-wide discovery of human linear motifs. Cell Rep 2022;39:110764. [PMID: 35508127 DOI: 10.1016/j.celrep.2022.110764] [Reference Citation Analysis]
6 James K, Muñoz-Muñoz J. Computational Network Inference for Bacterial Interactomics. mSystems 2022;:e0145621. [PMID: 35353009 DOI: 10.1128/msystems.01456-21] [Reference Citation Analysis]
7 Li Y, Maleki M, Carruthers NJ, Stemmer PM, Ngom A, Rueda L. The predictive performance of short-linear motif features in the prediction of calmodulin-binding proteins. BMC Bioinformatics 2018;19:410. [PMID: 30453876 DOI: 10.1186/s12859-018-2378-9] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 1.5] [Reference Citation Analysis]
8 Karabulut OC, Karpuzcu BA, Türk E, Ibrahim AH, Süzek BE. ML-AdVInfect: A Machine-Learning Based Adenoviral Infection Predictor. Front Mol Biosci 2021;8:647424. [PMID: 34026828 DOI: 10.3389/fmolb.2021.647424] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
9 Janaki C, Malini M, Tyagi N, Srinivasan N. Unity and diversity among viral kinases. Gene 2020;723:144134. [PMID: 31589960 DOI: 10.1016/j.gene.2019.144134] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.7] [Reference Citation Analysis]
10 Young F, Rogers S, Robertson DL. Predicting host taxonomic information from viral genomes: A comparison of feature representations. PLoS Comput Biol 2020;16:e1007894. [PMID: 32453718 DOI: 10.1371/journal.pcbi.1007894] [Cited by in Crossref: 8] [Cited by in F6Publishing: 5] [Article Influence: 4.0] [Reference Citation Analysis]
11 Yang CW, Shi ZL. Uncovering potential host proteins and pathways that may interact with eukaryotic short linear motifs in viral proteins of MERS, SARS and SARS2 coronaviruses that infect humans. PLoS One 2021;16:e0246150. [PMID: 33534852 DOI: 10.1371/journal.pone.0246150] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
12 Seo MH, Kim PM. The present and the future of motif-mediated protein-protein interactions. Curr Opin Struct Biol 2018;50:162-70. [PMID: 29730529 DOI: 10.1016/j.sbi.2018.04.005] [Cited by in Crossref: 15] [Cited by in F6Publishing: 13] [Article Influence: 3.8] [Reference Citation Analysis]
13 Martínez YA, Guo X, Portales-Pérez DP, Rivera G, Castañeda-Delgado JE, García-Pérez CA, Enciso-Moreno JA, Lara-Ramírez EE. The analysis on the human protein domain targets and host-like interacting motifs for the MERS-CoV and SARS-CoV/CoV-2 infers the molecular mimicry of coronavirus. PLoS One 2021;16:e0246901. [PMID: 33596252 DOI: 10.1371/journal.pone.0246901] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
14 Hu R, Hesham AE, Zou Q. Machine Learning and Its Applications for Protozoal Pathogens and Protozoal Infectious Diseases. Front Cell Infect Microbiol 2022;12:882995. [DOI: 10.3389/fcimb.2022.882995] [Reference Citation Analysis]
15 Hraber P, O'Maille PE, Silberfarb A, Davis-Anderson K, Generous N, McMahon BH, Fair JM. Resources to Discover and Use Short Linear Motifs in Viral Proteins. Trends Biotechnol 2020;38:113-27. [PMID: 31427097 DOI: 10.1016/j.tibtech.2019.07.004] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 2.7] [Reference Citation Analysis]
16 Kumar N, Mishra B, Mehmood A, Mohammad Athar, M Shahid Mukhtar. Integrative Network Biology Framework Elucidates Molecular Mechanisms of SARS-CoV-2 Pathogenesis. iScience 2020;23:101526. [PMID: 32895641 DOI: 10.1016/j.isci.2020.101526] [Cited by in Crossref: 13] [Cited by in F6Publishing: 15] [Article Influence: 6.5] [Reference Citation Analysis]
17 Guven-Maiorov E, Tsai CJ, Ma B, Nussinov R. Interface-Based Structural Prediction of Novel Host-Pathogen Interactions. Methods Mol Biol 2019;1851:317-35. [PMID: 30298406 DOI: 10.1007/978-1-4939-8736-8_18] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 2.7] [Reference Citation Analysis]
18 Soyemi J, Isewon I, Oyelade J, Adebiyi E. Inter-Species/Host-Parasite Protein Interaction Predictions Reviewed. Curr Bioinform 2018;13:396-406. [PMID: 31496926 DOI: 10.2174/1574893613666180108155851] [Cited by in Crossref: 15] [Cited by in F6Publishing: 7] [Article Influence: 3.8] [Reference Citation Analysis]
19 Zheng N, Wang K, Zhan W, Deng L. Targeting Virus-host Protein Interactions: Feature Extraction and Machine Learning Approaches. Curr Drug Metab 2019;20:177-84. [PMID: 30156155 DOI: 10.2174/1389200219666180829121038] [Cited by in Crossref: 22] [Cited by in F6Publishing: 13] [Article Influence: 7.3] [Reference Citation Analysis]
20 Kumar N, Mishra B, Mehmood A, Athar M, Mukhtar MS. Integrative Network Biology Framework Elucidates Molecular Mechanisms of SARS-CoV-2 Pathogenesis. SSRN 2020;:3581857. [PMID: 32714115 DOI: 10.2139/ssrn.3581857] [Cited by in Crossref: 2] [Article Influence: 1.0] [Reference Citation Analysis]
21 Elkhaligy H, Balbin CA, Gonzalez JL, Liberatore T, Siltberg-Liberles J. Dynamic, but Not Necessarily Disordered, Human-Virus Interactions Mediated through SLiMs in Viral Proteins. Viruses 2021;13:2369. [PMID: 34960638 DOI: 10.3390/v13122369] [Reference Citation Analysis]
22 Chen J, Sun J, Liu X, Liu F, Liu R, Wang J. Structure-based prediction of West Nile virus-human protein-protein interactions. J Biomol Struct Dyn 2019;37:2310-21. [PMID: 30044201 DOI: 10.1080/07391102.2018.1479659] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
23 Dick K, Samanfar B, Barnes B, Cober ER, Mimee B, Tan LH, Molnar SJ, Biggar KK, Golshani A, Dehne F, Green JR. PIPE4: Fast PPI Predictor for Comprehensive Inter- and Cross-Species Interactomes. Sci Rep 2020;10:1390. [PMID: 31996697 DOI: 10.1038/s41598-019-56895-w] [Cited by in Crossref: 4] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
24 Lo Cascio E, Toto A, Babini G, De Maio F, Sanguinetti M, Mordente A, Della Longa S, Arcovito A. Structural determinants driving the binding process between PDZ domain of wild type human PALS1 protein and SLiM sequences of SARS-CoV E proteins. Comput Struct Biotechnol J 2021;19:1838-47. [PMID: 33758649 DOI: 10.1016/j.csbj.2021.03.014] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 3.0] [Reference Citation Analysis]
25 Guven-Maiorov E, Hakouz A, Valjevac S, Keskin O, Tsai CJ, Gursoy A, Nussinov R. HMI-PRED: A Web Server for Structural Prediction of Host-Microbe Interactions Based on Interface Mimicry. J Mol Biol 2020;432:3395-403. [PMID: 32061934 DOI: 10.1016/j.jmb.2020.01.025] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 3.0] [Reference Citation Analysis]
26 García-Pérez CA, Guo X, Navarro JG, Aguilar DAG, Lara-Ramírez EE. Proteome-wide analysis of human motif-domain interactions mapped on influenza a virus. BMC Bioinformatics 2018;19:238. [PMID: 29940841 DOI: 10.1186/s12859-018-2237-8] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 1.3] [Reference Citation Analysis]
27 Acharya D, Dutta TK. Elucidating the network features and evolutionary attributes of intra- and interspecific protein-protein interactions between human and pathogenic bacteria. Sci Rep 2021;11:190. [PMID: 33420198 DOI: 10.1038/s41598-020-80549-x] [Reference Citation Analysis]