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For: Smith AM. Host-pathogen kinetics during influenza infection and coinfection: insights from predictive modeling. Immunol Rev 2018;285:97-112. [PMID: 30129197 DOI: 10.1111/imr.12692] [Cited by in Crossref: 37] [Cited by in F6Publishing: 27] [Article Influence: 12.3] [Reference Citation Analysis]
Number Citing Articles
1 Reeves DB, Rolland M, Dearlove BL, Li Y, Robb ML, Schiffer JT, Gilbert P, Cardozo-Ojeda EF, Mayer BT. Timing HIV infection with a simple and accurate population viral dynamics model. J R Soc Interface 2021;18:20210314. [PMID: 34186015 DOI: 10.1098/rsif.2021.0314] [Reference Citation Analysis]
2 Motawi TK, Shahin NN, Awad K, Maghraby AS, Abd-Elshafy DN, Bahgat MM. Glycolytic and immunological alterations in human U937 monocytes in response to H1N1 infection. IUBMB Life 2020;72:2481-98. [PMID: 32941696 DOI: 10.1002/iub.2378] [Reference Citation Analysis]
3 Rippee-Brooks MD, Marcinczyk RN, Lupfer CR. What came first, the virus or the egg: Innate immunity during viral coinfections. Immunol Rev 2020;297:194-206. [PMID: 32761626 DOI: 10.1111/imr.12911] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
4 Villeret B, Solhonne B, Straube M, Lemaire F, Cazes A, Garcia-Verdugo I, Sallenave JM. Influenza A Virus Pre-Infection Exacerbates Pseudomonas aeruginosa-Mediated Lung Damage Through Increased MMP-9 Expression, Decreased Elafin Production and Tissue Resilience. Front Immunol 2020;11:117. [PMID: 32117268 DOI: 10.3389/fimmu.2020.00117] [Cited by in Crossref: 8] [Cited by in F6Publishing: 7] [Article Influence: 4.0] [Reference Citation Analysis]
5 Belser JA, Pulit-Penaloza JA, Maines TR. Ferreting Out Influenza Virus Pathogenicity and Transmissibility: Past and Future Risk Assessments in the Ferret Model. Cold Spring Harb Perspect Med 2020;10:a038323. [PMID: 31871233 DOI: 10.1101/cshperspect.a038323] [Cited by in Crossref: 9] [Cited by in F6Publishing: 7] [Article Influence: 4.5] [Reference Citation Analysis]
6 Néant N, Lingas G, Le Hingrat Q, Ghosn J, Engelmann I, Lepiller Q, Gaymard A, Ferré V, Hartard C, Plantier JC, Thibault V, Marlet J, Montes B, Bouiller K, Lescure FX, Timsit JF, Faure E, Poissy J, Chidiac C, Raffi F, Kimmoun A, Etienne M, Richard JC, Tattevin P, Garot D, Le Moing V, Bachelet D, Tardivon C, Duval X, Yazdanpanah Y, Mentré F, Laouénan C, Visseaux B, Guedj J; French COVID Cohort Investigators and French Cohort Study groups. Modeling SARS-CoV-2 viral kinetics and association with mortality in hospitalized patients from the French COVID cohort. Proc Natl Acad Sci U S A 2021;118:e2017962118. [PMID: 33536313 DOI: 10.1073/pnas.2017962118] [Cited by in Crossref: 24] [Cited by in F6Publishing: 16] [Article Influence: 24.0] [Reference Citation Analysis]
7 Baabdulla AA, Now H, Park JA, Kim WJ, Jung S, Yoo JY, Hillen T. Homogenization of a reaction diffusion equation can explain influenza A virus load data. J Theor Biol 2021;527:110816. [PMID: 34161792 DOI: 10.1016/j.jtbi.2021.110816] [Reference Citation Analysis]
8 Perelson AS, Ribeiro RM. Introduction to modeling viral infections and immunity. Immunol Rev 2018;285:5-8. [PMID: 30129196 DOI: 10.1111/imr.12700] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 2.7] [Reference Citation Analysis]
9 Smith AP, Williams EP, Plunkett TR, Selvaraj M, Lane LC, Zalduondo L, Xue Y, Vogel P, Channappanavar R, Jonsson CB, Smith AM. Time-Dependent Increase in Susceptibility and Severity of Secondary Bacterial Infections During SARS-CoV-2. Front Immunol 2022;13:894534. [DOI: 10.3389/fimmu.2022.894534] [Reference Citation Analysis]
10 Smith AP, Lane LC, van Opijnen T, Woolard S, Carter R, Iverson A, Burnham C, Vogel P, Roeber D, Hochu G, Johnson MDL, McCullers JA, Rosch J, Smith AM. Dynamic Pneumococcal Genetic Adaptations Support Bacterial Growth and Inflammation during Coinfection with Influenza. Infect Immun 2021;89:e0002321. [PMID: 33875471 DOI: 10.1128/IAI.00023-21] [Reference Citation Analysis]
11 Minucci S, Heise RL, Valentine MS, Kamga Gninzeko FJ, Reynolds AM. Mathematical modeling of ventilator-induced lung inflammation. J Theor Biol 2021;526:110738. [PMID: 33930440 DOI: 10.1016/j.jtbi.2021.110738] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
12 Minucci SB, Heise RL, Reynolds AM. Review of Mathematical Modeling of the Inflammatory Response in Lung Infections and Injuries. Front Appl Math Stat 2020;6:36. [DOI: 10.3389/fams.2020.00036] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 1.5] [Reference Citation Analysis]
13 Contreras C, Newby JM, Hillen T. Personalized Virus Load Curves for Acute Viral Infections. Viruses 2021;13:1815. [PMID: 34578396 DOI: 10.3390/v13091815] [Reference Citation Analysis]
14 Smith AM. Validated Models of Immune Response to Virus Infection. Curr Opin Syst Biol 2018;12:46-52. [PMID: 31723715 DOI: 10.1016/j.coisb.2018.10.005] [Cited by in Crossref: 9] [Cited by in F6Publishing: 8] [Article Influence: 2.3] [Reference Citation Analysis]
15 Jenner AL, Aogo RA, Alfonso S, Crowe V, Deng X, Smith AP, Morel PA, Davis CL, Smith AM, Craig M. COVID-19 virtual patient cohort suggests immune mechanisms driving disease outcomes. PLoS Pathog 2021;17:e1009753. [PMID: 34260666 DOI: 10.1371/journal.ppat.1009753] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
16 Jenner AL, Aogo RA, Davis CL, Smith AM, Craig M. Leveraging Computational Modeling to Understand Infectious Diseases. Curr Pathobiol Rep 2020;:1-13. [PMID: 32989410 DOI: 10.1007/s40139-020-00213-x] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 2.0] [Reference Citation Analysis]
17 Nakahira Y, Liu Q, Sejnowski TJ, Doyle JC. Diversity-enabled sweet spots in layered architectures and speed-accuracy trade-offs in sensorimotor control. Proc Natl Acad Sci U S A 2021;118:e1916367118. [PMID: 34050009 DOI: 10.1073/pnas.1916367118] [Reference Citation Analysis]
18 Pinky L, Gonzalez-Parra G, Dobrovolny HM. Effect of stochasticity on coinfection dynamics of respiratory viruses. BMC Bioinformatics 2019;20:191. [PMID: 30991939 DOI: 10.1186/s12859-019-2793-6] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 0.7] [Reference Citation Analysis]
19 Gonçalves A, Bertrand J, Ke R, Comets E, de Lamballerie X, Malvy D, Pizzorno A, Terrier O, Calatrava MR, Mentré F, Smith P, Perelson AS, Guedj J. Timing of antiviral treatment initiation is critical to reduce SARS-CoV-2 viral load. medRxiv 2020:2020. [PMID: 32511641 DOI: 10.1101/2020.04.04.20047886] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 2.5] [Reference Citation Analysis]
20 Jenner AL, Aogo RA, Alfonso S, Crowe V, Smith AP, Morel PA, Davis CL, Smith AM, Craig M. COVID-19 virtual patient cohort reveals immune mechanisms driving disease outcomes. bioRxiv 2021:2021. [PMID: 33442689 DOI: 10.1101/2021.01.05.425420] [Cited by in Crossref: 2] [Article Influence: 2.0] [Reference Citation Analysis]
21 Myers MA, Smith AP, Lane LC, Moquin DJ, Aogo R, Woolard S, Thomas P, Vogel P, Smith AM. Dynamically linking influenza virus infection kinetics, lung injury, inflammation, and disease severity. Elife 2021;10:e68864. [PMID: 34282728 DOI: 10.7554/eLife.68864] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
22 Kong D, Zheng Y, Hu L, Chen J, Wu H, Teng Z, Zhou Y, Qiu Q, Lu Y, Pan H. Epidemiological and co-infection characteristics of common human coronaviruses in Shanghai, 2015-2020: a retrospective observational study. Emerg Microbes Infect 2021;10:1660-8. [PMID: 34350810 DOI: 10.1080/22221751.2021.1965498] [Reference Citation Analysis]
23 Gonçalves A, Bertrand J, Ke R, Comets E, de Lamballerie X, Malvy D, Pizzorno A, Terrier O, Rosa Calatrava M, Mentré F, Smith P, Perelson AS, Guedj J. Timing of Antiviral Treatment Initiation is Critical to Reduce SARS-CoV-2 Viral Load. CPT Pharmacometrics Syst Pharmacol 2020;9:509-14. [PMID: 32558354 DOI: 10.1002/psp4.12543] [Cited by in Crossref: 42] [Cited by in F6Publishing: 52] [Article Influence: 21.0] [Reference Citation Analysis]
24 Nissly RH, Zaman N, Ibrahim PAS, McDaniel K, Lim L, Kiser JN, Bird I, Chothe SK, Bhushan GL, Vandegrift K, Neibergs HL, Kuchipudi SV. Influenza C and D viral load in cattle correlates with bovine respiratory disease (BRD): Emerging role of orthomyxoviruses in the pathogenesis of BRD. Virology 2020;551:10-5. [PMID: 33010670 DOI: 10.1016/j.virol.2020.08.014] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 2.5] [Reference Citation Analysis]
25 Liu W, Qiu S, Zhang L, Wu H, Tian X, Li X, Xu D, Dai J, Gu S, Liu Q, Chen D, Zhou R. Analysis of severe human adenovirus infection outbreak in Guangdong Province, southern China in 2019. Virologica Sinica 2022. [DOI: 10.1016/j.virs.2022.01.010] [Reference Citation Analysis]
26 Mikušová M, Tomčíková K, Briestenská K, Kostolanský F, Varečková E. The Contribution of Viral Proteins to the Synergy of Influenza and Bacterial Co-Infection. Viruses 2022;14:1064. [PMID: 35632805 DOI: 10.3390/v14051064] [Reference Citation Analysis]
27 Chung M, Binois M, Gramacy RB, Bardsley JM, Moquin DJ, Smith AP, Smith AM. PARAMETER AND UNCERTAINTY ESTIMATION FOR DYNAMICAL SYSTEMS USING SURROGATE STOCHASTIC PROCESSES. SIAM J Sci Comput 2019;41:A2212-38. [PMID: 31749599 DOI: 10.1137/18M1213403] [Cited by in Crossref: 6] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
28 Moore JR, Ahmed H, Manicassamy B, Garcia-Sastre A, Handel A, Antia R. Varying Inoculum Dose to Assess the Roles of the Immune Response and Target Cell Depletion by the Pathogen in Control of Acute Viral Infections. Bull Math Biol 2020;82:35. [PMID: 32125535 DOI: 10.1007/s11538-020-00711-4] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]
29 Getz M, Wang Y, An G, Asthana M, Becker A, Cockrell C, Collier N, Craig M, Davis CL, Faeder JR, Versypt ANF, Mapder T, Gianlupi JF, Glazier JA, Hamis S, Heiland R, Hillen T, Hou D, Islam MA, Jenner AL, Kurtoglu F, Larkin CI, Liu B, Macfarlane F, Maygrundter P, Morel PA, Narayanan A, Ozik J, Pienaar E, Rangamani P, Saglam AS, Shoemaker JE, Smith AM, Weaver JJA, Macklin P. Iterative community-driven development of a SARS-CoV-2 tissue simulator. bioRxiv 2021:2020. [PMID: 32511322 DOI: 10.1101/2020.04.02.019075] [Cited by in Crossref: 13] [Cited by in F6Publishing: 5] [Article Influence: 13.0] [Reference Citation Analysis]
30 Gallagher ME, Brooke CB, Ke R, Koelle K. Causes and Consequences of Spatial Within-Host Viral Spread. Viruses 2018;10:E627. [PMID: 30428545 DOI: 10.3390/v10110627] [Cited by in Crossref: 34] [Cited by in F6Publishing: 21] [Article Influence: 8.5] [Reference Citation Analysis]
31 Sasaki K, Bruder D, Hernandez-Vargas EA. Topological data analysis to model the shape of immune responses during co-infections. Commun Nonlinear Sci Numer Simul 2020;85:105228. [PMID: 32288422 DOI: 10.1016/j.cnsns.2020.105228] [Cited by in Crossref: 5] [Cited by in F6Publishing: 1] [Article Influence: 2.5] [Reference Citation Analysis]
32 Smith AM. Host-pathogen kinetics during influenza infection and coinfection: insights from predictive modeling. Immunol Rev 2018;285:97-112. [PMID: 30129197 DOI: 10.1111/imr.12692] [Cited by in Crossref: 37] [Cited by in F6Publishing: 27] [Article Influence: 12.3] [Reference Citation Analysis]
33 Esneau C, Duff AC, Bartlett NW. Understanding Rhinovirus Circulation and Impact on Illness. Viruses 2022;14:141. [PMID: 35062345 DOI: 10.3390/v14010141] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]