| 1 |
Soto DC, Uribe-Salazar JM, Shew CJ, Sekar A, McGinty SP, Dennis MY. Genomic structural variation: A complex but important driver of human evolution. Am J Biol Anthropol 2023. [PMID: 36794631 DOI: 10.1002/ajpa.24713] [Reference Citation Analysis]
|
| 2 |
Ma C, Li C, Ma H, Yu D, Zhang Y, Zhang D, Su T, Wu J, Wang X, Zhang L, Chen CL, Zhang YE. Pan-cancer surveys indicate cell cycle-related roles of primate-specific genes in tumors and embryonic cerebrum. Genome Biol 2022;23:251. [PMID: 36474250 DOI: 10.1186/s13059-022-02821-9] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 3 |
Li C, Fan X, Guo X, Liu Y, Wang M, Zhao XC, Wu P, Yan Q, Sun L. Accuracy benchmark of the GeneMind GenoLab M sequencing platform for WGS and WES analysis. BMC Genomics 2022;23. [DOI: 10.1186/s12864-022-08775-3] [Reference Citation Analysis]
|
| 4 |
Nowakowski TJ, Salama SR. Cerebral Organoids as an Experimental Platform for Human Neurogenomics. Cells 2022;11. [PMID: 36139380 DOI: 10.3390/cells11182803] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 5 |
Vollger MR, Guitart X, Dishuck PC, Mercuri L, Harvey WT, Gershman A, Diekhans M, Sulovari A, Munson KM, Lewis AP, Hoekzema K, Porubsky D, Li R, Nurk S, Koren S, Miga KH, Phillippy AM, Timp W, Ventura M, Eichler EE. Segmental duplications and their variation in a complete human genome. Science 2022;376:eabj6965. [PMID: 35357917 DOI: 10.1126/science.abj6965] [Cited by in Crossref: 25] [Cited by in F6Publishing: 22] [Article Influence: 25.0] [Reference Citation Analysis]
|
| 6 |
Išerić H, Alkan C, Hach F, Numanagić I. Fast characterization of segmental duplication structure in multiple genome assemblies. Algorithms Mol Biol 2022;17:4. [PMID: 35303886 DOI: 10.1186/s13015-022-00210-2] [Reference Citation Analysis]
|
| 7 |
Zhang D, Leng L, Chen C, Huang J, Zhang Y, Yuan H, Ma C, Chen H, Zhang YE. Dosage sensitivity and exon shuffling shape the landscape of polymorphic duplicates in Drosophila and humans. Nat Ecol Evol 2021. [PMID: 34969986 DOI: 10.1038/s41559-021-01614-w] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 8 |
Ferrández-peral L, Zhan X, Álvarez-estapé M, Chiva C, Esteller-cucala P, García-pérez R, Julià E, Lizano E, Fornas Ò, Sabidó E, Li Q, Marquès-bonet T, Juan D, Zhang G. Transcriptome innovations in primates revealed by single-molecule long-read sequencing.. [DOI: 10.1101/2021.11.10.468034] [Reference Citation Analysis]
|
| 9 |
Ma Y, Chen Z, Yu J. Pseudogenes and their potential functions in hematopoiesis. Exp Hematol 2021:S0301-472X(21)00292-7. [PMID: 34517065 DOI: 10.1016/j.exphem.2021.09.001] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 10 |
Berto S, Liu Y, Konopka G. Genomics at cellular resolution: insights into cognitive disorders and their evolution. Hum Mol Genet 2020;29:R1-9. [PMID: 32566943 DOI: 10.1093/hmg/ddaa117] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 11 |
Hsieh P, Dang V, Vollger MR, Mao Y, Huang TH, Dishuck PC, Baker C, Cantsilieris S, Lewis AP, Munson KM, Sorensen M, Welch AE, Underwood JG, Eichler EE. Evidence for opposing selective forces operating on human-specific duplicated TCAF genes in Neanderthals and humans. Nat Commun 2021;12:5118. [PMID: 34433829 DOI: 10.1038/s41467-021-25435-4] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
|
| 12 |
Vollger MR, Guitart X, Dishuck PC, Mercuri L, Harvey WT, Gershman A, Diekhans M, Sulovari A, Munson KM, Lewis AM, Hoekzema K, Porubsky D, Li R, Nurk S, Koren S, Miga KH, Phillippy AM, Timp W, Ventura M, Eichler EE. Segmental duplications and their variation in a complete human genome.. [DOI: 10.1101/2021.05.26.445678] [Cited by in Crossref: 15] [Cited by in F6Publishing: 14] [Article Influence: 7.5] [Reference Citation Analysis]
|
| 13 |
Heide M, Huttner WB. Human-Specific Genes, Cortical Progenitor Cells, and Microcephaly. Cells 2021;10:1209. [PMID: 34063381 DOI: 10.3390/cells10051209] [Cited by in Crossref: 8] [Cited by in F6Publishing: 9] [Article Influence: 4.0] [Reference Citation Analysis]
|
| 14 |
Shew CJ, Carmona-Mora P, Soto DC, Mastoras M, Roberts E, Rosas J, Jagannathan D, Kaya G, O'Geen H, Dennis MY. Diverse Molecular Mechanisms Contribute to Differential Expression of Human Duplicated Genes. Mol Biol Evol 2021;38:3060-77. [PMID: 34009325 DOI: 10.1093/molbev/msab131] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 15 |
Brohard-Julien S, Frouin V, Meyer V, Chalabi S, Deleuze JF, Le Floch E, Battail C. Region-specific expression of young small-scale duplications in the human central nervous system. BMC Ecol Evol 2021;21:59. [PMID: 33882820 DOI: 10.1186/s12862-021-01794-w] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 16 |
Gui Q, Deng S, Zhou Z, Cao W, Zhang X, Shi W, Cai X, Jiang W, Cui Z, Hu Z, Chen X. Transcriptome Analysis in Yeast Reveals the Externality of Position Effects. Mol Biol Evol 2021;38:3294-307. [PMID: 33871622 DOI: 10.1093/molbev/msab104] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 17 |
Lodewijk GA, Fernandes DP, Vretzakis I, Savage JE, Jacobs FMJ. Evolution of Human Brain Size-Associated NOTCH2NL Genes Proceeds toward Reduced Protein Levels. Mol Biol Evol 2020;37:2531-48. [PMID: 32330268 DOI: 10.1093/molbev/msaa104] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 3.0] [Reference Citation Analysis]
|
| 18 |
Li-pook-than J, Banuelos S, Honkala A, Sahoo MK, Pinsky BA, Snyder MP. Long-read sequencing of SARS-CoV-2 reveals novel transcripts and a diverse complex transcriptome landscape.. [DOI: 10.1101/2021.03.05.434150] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 19 |
Warren WC, Harris RA, Haukness M, Fiddes IT, Murali SC, Fernandes J, Dishuck PC, Storer JM, Raveendran M, Hillier LW, Porubsky D, Mao Y, Gordon D, Vollger MR, Lewis AP, Munson KM, DeVogelaere E, Armstrong J, Diekhans M, Walker JA, Tomlinson C, Graves-Lindsay TA, Kremitzki M, Salama SR, Audano PA, Escalona M, Maurer NW, Antonacci F, Mercuri L, Maggiolini FAM, Catacchio CR, Underwood JG, O'Connor DH, Sanders AD, Korbel JO, Ferguson B, Kubisch HM, Picker L, Kalin NH, Rosene D, Levine J, Abbott DH, Gray SB, Sanchez MM, Kovacs-Balint ZA, Kemnitz JW, Thomasy SM, Roberts JA, Kinnally EL, Capitanio JP, Skene JHP, Platt M, Cole SA, Green RE, Ventura M, Wiseman RW, Paten B, Batzer MA, Rogers J, Eichler EE. Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility. Science 2020;370:eabc6617. [PMID: 33335035 DOI: 10.1126/science.abc6617] [Cited by in Crossref: 36] [Cited by in F6Publishing: 44] [Article Influence: 18.0] [Reference Citation Analysis]
|
| 20 |
Ma Y, Liu S, Gao J, Chen C, Zhang X, Yuan H, Chen Z, Yin X, Sun C, Mao Y, Zhou F, Shao Y, Liu Q, Xu J, Cheng L, Yu D, Li P, Yi P, He J, Geng G, Guo Q, Si Y, Zhao H, Li H, Banes GL, Liu H, Nakamura Y, Kurita R, Huang Y, Wang X, Wang F, Fang G, Engel JD, Shi L, Zhang YE, Yu J. Genome-wide analysis of pseudogenes reveals HBBP1's human-specific essentiality in erythropoiesis and implication in β-thalassemia. Dev Cell 2021;56:478-493.e11. [PMID: 33476555 DOI: 10.1016/j.devcel.2020.12.019] [Cited by in Crossref: 13] [Cited by in F6Publishing: 13] [Article Influence: 6.5] [Reference Citation Analysis]
|
| 21 |
Hurgobin B, Tamiru-Oli M, Welling MT, Doblin MS, Bacic A, Whelan J, Lewsey MG. Recent advances in Cannabis sativa genomics research. New Phytol 2021;230:73-89. [PMID: 33283274 DOI: 10.1111/nph.17140] [Cited by in Crossref: 34] [Cited by in F6Publishing: 37] [Article Influence: 17.0] [Reference Citation Analysis]
|
| 22 |
Reiner O, Sapir T, Parichha A. Use of iPSC-derived brain organoids to study human brain evolution. Recent Advances in iPSC Technology 2021. [DOI: 10.1016/b978-0-12-822231-7.00012-6] [Reference Citation Analysis]
|
| 23 |
Logsdon GA, Vollger MR, Hsieh P, Mao Y, Liskovykh MA, Koren S, Nurk S, Mercuri L, Dishuck PC, Rhie A, de Lima LG, Dvorkina T, Porubsky D, Harvey WT, Mikheenko A, Bzikadze AV, Kremitzki M, Graves-Lindsay TA, Jain C, Hoekzema K, Murali SC, Munson KM, Baker C, Sorensen M, Lewis AM, Surti U, Gerton JL, Larionov V, Ventura M, Miga KH, Phillippy AM, Eichler EE. The structure, function and evolution of a complete human chromosome 8. Nature 2021;593:101-7. [PMID: 33828295 DOI: 10.1038/s41586-021-03420-7] [Cited by in Crossref: 138] [Cited by in F6Publishing: 131] [Article Influence: 69.0] [Reference Citation Analysis]
|
| 24 |
Shew CJ, Carmona-mora P, Soto DC, Mastoras M, Roberts E, Rosas J, Jagannathan D, Kaya G, O’geene H, Dennis MY. Diverse molecular mechanisms contribute to differential expression of human duplicated genes.. [DOI: 10.1101/2020.11.27.401752] [Reference Citation Analysis]
|
| 25 |
Cantsilieris S, Sunkin SM, Johnson ME, Anaclerio F, Huddleston J, Baker C, Dougherty ML, Underwood JG, Sulovari A, Hsieh P, Mao Y, Catacchio CR, Malig M, Welch AE, Sorensen M, Munson KM, Jiang W, Girirajan S, Ventura M, Lamb BT, Conlon RA, Eichler EE. An evolutionary driver of interspersed segmental duplications in primates. Genome Biol 2020;21:202. [PMID: 32778141 DOI: 10.1186/s13059-020-02074-4] [Cited by in Crossref: 10] [Cited by in F6Publishing: 5] [Article Influence: 3.3] [Reference Citation Analysis]
|
| 26 |
Oikonomopoulos S, Bayega A, Fahiminiya S, Djambazian H, Berube P, Ragoussis J. Methodologies for Transcript Profiling Using Long-Read Technologies. Front Genet 2020;11:606. [PMID: 32733532 DOI: 10.3389/fgene.2020.00606] [Cited by in Crossref: 40] [Cited by in F6Publishing: 41] [Article Influence: 13.3] [Reference Citation Analysis]
|
| 27 |
Logsdon GA, Vollger MR, Eichler EE. Long-read human genome sequencing and its applications. Nat Rev Genet 2020;21:597-614. [PMID: 32504078 DOI: 10.1038/s41576-020-0236-x] [Cited by in Crossref: 256] [Cited by in F6Publishing: 273] [Article Influence: 85.3] [Reference Citation Analysis]
|
| 28 |
Sheynkman GM, Tuttle KS, Laval F, Tseng E, Underwood JG, Yu L, Dong D, Smith ML, Sebra R, Willems L, Hao T, Calderwood MA, Hill DE, Vidal M. ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms. Nat Commun 2020;11:2326. [PMID: 32393825 DOI: 10.1038/s41467-020-16174-z] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 3.3] [Reference Citation Analysis]
|
| 29 |
Hsieh P, Vollger MR, Dang V, Porubsky D, Baker C, Cantsilieris S, Hoekzema K, Lewis AP, Munson KM, Sorensen M, Kronenberg ZN, Murali S, Nelson BJ, Chiatante G, Maggiolini FAM, Blanché H, Underwood JG, Antonacci F, Deleuze JF, Eichler EE. Adaptive archaic introgression of copy number variants and the discovery of previously unknown human genes. Science 2019;366:eaax2083. [PMID: 31624180 DOI: 10.1126/science.aax2083] [Cited by in Crossref: 47] [Cited by in F6Publishing: 48] [Article Influence: 15.7] [Reference Citation Analysis]
|
| 30 |
Namba T, Dóczi J, Pinson A, Xing L, Kalebic N, Wilsch-Bräuninger M, Long KR, Vaid S, Lauer J, Bogdanova A, Borgonovo B, Shevchenko A, Keller P, Drechsel D, Kurzchalia T, Wimberger P, Chinopoulos C, Huttner WB. Human-Specific ARHGAP11B Acts in Mitochondria to Expand Neocortical Progenitors by Glutaminolysis. Neuron 2020;105:867-881.e9. [PMID: 31883789 DOI: 10.1016/j.neuron.2019.11.027] [Cited by in Crossref: 73] [Cited by in F6Publishing: 42] [Article Influence: 24.3] [Reference Citation Analysis]
|
| 31 |
Gilbert DG. Longest protein, longest transcript or most expression, for accurate gene reconstruction of transcriptomes?. [DOI: 10.1101/829184] [Cited by in Crossref: 23] [Cited by in F6Publishing: 23] [Article Influence: 5.8] [Reference Citation Analysis]
|
| 32 |
Kanton S, Boyle MJ, He Z, Santel M, Weigert A, Sanchís-calleja F, Guijarro P, Sidow L, Fleck JS, Han D, Qian Z, Heide M, Huttner WB, Khaitovich P, Pääbo S, Treutlein B, Camp JG. Organoid single-cell genomic atlas uncovers human-specific features of brain development. Nature 2019;574:418-22. [DOI: 10.1038/s41586-019-1654-9] [Cited by in Crossref: 301] [Cited by in F6Publishing: 312] [Article Influence: 75.3] [Reference Citation Analysis]
|
| 33 |
Kuo RI, Cheng Y, Smith J, Archibald AL, Burt DW. Illuminating the dark side of the human transcriptome with TAMA Iso-Seq analysis.. [DOI: 10.1101/780015] [Cited by in Crossref: 12] [Cited by in F6Publishing: 11] [Article Influence: 3.0] [Reference Citation Analysis]
|
| 34 |
Hardwick SA, Joglekar A, Flicek P, Frankish A, Tilgner HU. Getting the Entire Message: Progress in Isoform Sequencing. Front Genet 2019;10:709. [PMID: 31475029 DOI: 10.3389/fgene.2019.00709] [Cited by in Crossref: 22] [Cited by in F6Publishing: 21] [Article Influence: 5.5] [Reference Citation Analysis]
|
| 35 |
Sone J, Mitsuhashi S, Fujita A, Mizuguchi T, Hamanaka K, Mori K, Koike H, Hashiguchi A, Takashima H, Sugiyama H, Kohno Y, Takiyama Y, Maeda K, Doi H, Koyano S, Takeuchi H, Kawamoto M, Kohara N, Ando T, Ieda T, Kita Y, Kokubun N, Tsuboi Y, Katoh K, Kino Y, Katsuno M, Iwasaki Y, Yoshida M, Tanaka F, Suzuki IK, Frith MC, Matsumoto N, Sobue G. Long-read sequencing identifies GGC repeat expansions in NOTCH2NLC associated with neuronal intranuclear inclusion disease. Nat Genet. 2019;51:1215-1221. [PMID: 31332381 DOI: 10.1038/s41588-019-0459-y] [Cited by in Crossref: 205] [Cited by in F6Publishing: 217] [Article Influence: 51.3] [Reference Citation Analysis]
|
| 36 |
Vierra M. Full-Length Transcript Sequencing—No Assembly Required. Genetic Engineering & Biotechnology News 2019;39:46-48. [DOI: 10.1089/gen.39.07.13] [Reference Citation Analysis]
|
| 37 |
Fiddes IT, Pollen AA, Davis JM, Sikela JM. Paired involvement of human-specific Olduvai domains and NOTCH2NL genes in human brain evolution. Hum Genet 2019;138:715-21. [PMID: 31087184 DOI: 10.1007/s00439-019-02018-4] [Cited by in Crossref: 15] [Cited by in F6Publishing: 18] [Article Influence: 3.8] [Reference Citation Analysis]
|
| 38 |
Mantere T, Kersten S, Hoischen A. Long-Read Sequencing Emerging in Medical Genetics. Front Genet 2019;10:426. [PMID: 31134132 DOI: 10.3389/fgene.2019.00426] [Cited by in Crossref: 187] [Cited by in F6Publishing: 190] [Article Influence: 46.8] [Reference Citation Analysis]
|
| 39 |
Vollger MR, Dishuck PC, Sorensen M, Welch AE, Dang V, Dougherty ML, Graves-Lindsay TA, Wilson RK, Chaisson MJP, Eichler EE. Long-read sequence and assembly of segmental duplications. Nat Methods 2019;16:88-94. [PMID: 30559433 DOI: 10.1038/s41592-018-0236-3] [Cited by in Crossref: 96] [Cited by in F6Publishing: 90] [Article Influence: 19.2] [Reference Citation Analysis]
|
| 40 |
[DOI: 10.1101/2020.09.08.285395] [Cited by in Crossref: 11] [Cited by in F6Publishing: 11] [Reference Citation Analysis]
|
| 41 |
[DOI: 10.1101/685057] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Reference Citation Analysis]
|
| 42 |
[DOI: 10.1101/515635] [Cited by in Crossref: 5] [Cited by in F6Publishing: 6] [Reference Citation Analysis]
|
