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For: Fu T, Li F, Zhang Y, Yin J, Qiu W, Li X, Liu X, Xin W, Wang C, Yu L, Gao J, Zheng Q, Zeng S, Zhu F. VARIDT 2.0: structural variability of drug transporter. Nucleic Acids Res 2021:gkab1013. [PMID: 34747471 DOI: 10.1093/nar/gkab1013] [Cited by in Crossref: 29] [Cited by in F6Publishing: 35] [Article Influence: 14.5] [Reference Citation Analysis]
Number Citing Articles
1 Wang T, Sun J, Zhao Q. Investigating cardiotoxicity related with hERG channel blockers using molecular fingerprints and graph attention mechanism. Comput Biol Med 2023;153:106464. [PMID: 36584603 DOI: 10.1016/j.compbiomed.2022.106464] [Reference Citation Analysis]
2 Alshabrmi FM, Alatawi EA. Deciphering the mechanism of resistance by novel double mutations in pncA in Mycobacterium tuberculosis using protein structural graphs (PSG) and structural bioinformatic approaches. Comput Biol Med 2023;154:106599. [PMID: 36731361 DOI: 10.1016/j.compbiomed.2023.106599] [Reference Citation Analysis]
3 Cheemanapalli S, Palaniappan C, Mahesh Y, Iyyappan Y, Yarrappagaari S, Kanagaraj S. In vitro and in silico perspectives to explain anticancer activity of a novel syringic acid analog ((4-(1H-1, 3-benzodiazol-2-yl)-2, 6-dimethoxy phenol)) through apoptosis activation and NFkB inhibition in K562 leukemia cells. Comput Biol Med 2023;152:106349. [PMID: 36470147 DOI: 10.1016/j.compbiomed.2022.106349] [Reference Citation Analysis]
4 Yue ZX, Yan TC, Xu HQ, Liu YH, Hong YF, Chen GX, Xie T, Tao L. A systematic review on the state-of-the-art strategies for protein representation. Comput Biol Med 2023;152:106440. [PMID: 36543002 DOI: 10.1016/j.compbiomed.2022.106440] [Reference Citation Analysis]
5 Yan TC, Yue ZX, Xu HQ, Liu YH, Hong YF, Chen GX, Tao L, Xie T. A systematic review of state-of-the-art strategies for machine learning-based protein function prediction. Comput Biol Med 2022;154:106446. [PMID: 36680931 DOI: 10.1016/j.compbiomed.2022.106446] [Reference Citation Analysis]
6 Tang H, Sun L, Huang J, Yang Z, Li C, Zhou X. The mechanism and biomarker function of Cavin-2 in lung ischemia-reperfusion injury. Comput Biol Med 2022;151:106234. [PMID: 36335812 DOI: 10.1016/j.compbiomed.2022.106234] [Reference Citation Analysis]
7 Chang SN, Keretsu S, Kang SC. Evaluation of decursin and its isomer decursinol angelate as potential inhibitors of human glutamate dehydrogenase activity through in silico and enzymatic assay screening. Comput Biol Med 2022;151:106287. [PMID: 36455296 DOI: 10.1016/j.compbiomed.2022.106287] [Reference Citation Analysis]
8 Zhang H, Wang Y, Pan Z, Sun X, Mou M, Zhang B, Li Z, Li H, Zhu F. ncRNAInter: a novel strategy based on graph neural network to discover interactions between lncRNA and miRNA. Brief Bioinform 2022;23:bbac411. [PMID: 36198065 DOI: 10.1093/bib/bbac411] [Reference Citation Analysis]
9 Yang Q, Li B, Wang P, Xie J, Feng Y, Liu Z, Zhu F. LargeMetabo: an out-of-the-box tool for processing and analyzing large-scale metabolomic data. Brief Bioinform 2022;23:bbac455. [PMID: 36274234 DOI: 10.1093/bib/bbac455] [Reference Citation Analysis]
10 Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res 2023;51:D1263-75. [PMID: 36243960 DOI: 10.1093/nar/gkac812] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
11 Li F, Yin J, Lu M, Mou M, Li Z, Zeng Z, Tan Y, Wang S, Chu X, Dai H, Hou T, Zeng S, Chen Y, Zhu F. DrugMAP: molecular atlas and pharma-information of all drugs. Nucleic Acids Res 2023;51:D1288-99. [PMID: 36243961 DOI: 10.1093/nar/gkac813] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 2.0] [Reference Citation Analysis]
12 Amahong K, Zhang W, Zhou Y, Zhang S, Yin J, Li F, Xu H, Yan T, Yue Z, Liu Y, Hou T, Qiu Y, Tao L, Han L, Zhu F. CovInter: interaction data between coronavirus RNAs and host proteins. Nucleic Acids Res 2023;51:D546-56. [PMID: 36200814 DOI: 10.1093/nar/gkac834] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
13 Pitsillou E, Liang JJ, Beh RC, Hung A, Karagiannis TC. Molecular dynamics simulations highlight the altered binding landscape at the spike-ACE2 interface between the Delta and Omicron variants compared to the SARS-CoV-2 original strain. Computers in Biology and Medicine 2022;149:106035. [DOI: 10.1016/j.compbiomed.2022.106035] [Reference Citation Analysis]
14 Pandiyan S, Wang L. A comprehensive review on recent approaches for cancer drug discovery associated with artificial intelligence. Comput Biol Med 2022;150:106140. [PMID: 36179510 DOI: 10.1016/j.compbiomed.2022.106140] [Reference Citation Analysis]
15 Liu S, Chen L, Zhang Y, Zhou Y, He Y, Chen Z, Qi S, Zhu J, Chen X, Zhang H, Luo Y, Qiu Y, Tao L, Zhu F. M6AREG: m6A-centered regulation of disease development and drug response. Nucleic Acids Res 2023;51:D1333-44. [PMID: 36134713 DOI: 10.1093/nar/gkac801] [Reference Citation Analysis]
16 Yang Q, Li Y, Li B, Gong Y. A novel multi-class classification model for schizophrenia, bipolar disorder and healthy controls using comprehensive transcriptomic data. Comput Biol Med 2022;148:105956. [PMID: 35981456 DOI: 10.1016/j.compbiomed.2022.105956] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
17 Zhang T, Lin Y, He W, Yuan F, Zeng Y, Zhang S. GCN-GENE: A novel method for prediction of coronary heart disease-related genes. Computers in Biology and Medicine 2022. [DOI: 10.1016/j.compbiomed.2022.105918] [Reference Citation Analysis]
18 Chakraborty R, Bhattacharje G, Baral J, Manna B, Mullick J, Mathapati BS, Abraham P, J M, Hasija Y, Ghosh A, Das AK. In-silico screening and in-vitro assay show the antiviral effect of Indomethacin against SARS-CoV-2. Comput Biol Med 2022;147:105788. [PMID: 35809412 DOI: 10.1016/j.compbiomed.2022.105788] [Reference Citation Analysis]
19 Li X, Liu X, Wang S, Shi X, Lu M, Hao X, Fu Y, Zhang Y, Jia Q, He D. Design, Synthesis, and biological evaluation of HDAC6 inhibitors based on Cap modification strategy. Bioorganic Chemistry 2022;125:105874. [DOI: 10.1016/j.bioorg.2022.105874] [Reference Citation Analysis]
20 Zhang S, Sun X, Mou M, Amahong K, Sun H, Zhang W, Shi S, Li Z, Gao J, Zhu F. REGLIV: Molecular regulation data of diverse living systems facilitating current multiomics research. Comput Biol Med 2022;148:105825. [PMID: 35872412 DOI: 10.1016/j.compbiomed.2022.105825] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 4.0] [Reference Citation Analysis]
21 Fan R, Suo B, Ding Y. Identification of Vesicle Transport Proteins via Hypergraph Regularized K-Local Hyperplane Distance Nearest Neighbour Model. Front Genet 2022;13:960388. [DOI: 10.3389/fgene.2022.960388] [Reference Citation Analysis]
22 Xie J, Chen R, Wang Q, Mao H. Exploration and validation of Taraxacum mongolicum anti-cancer effect. Comput Biol Med 2022;148:105819. [PMID: 35810695 DOI: 10.1016/j.compbiomed.2022.105819] [Reference Citation Analysis]
23 Khan A, Li W, Ambreen A, Wei D, Wang Y, Mao Y. A protein coupling and molecular simulation analysis of the clinical mutants of androgen receptor revealed a higher binding for Leupaxin, to increase the prostate cancer invasion and motility. Computers in Biology and Medicine 2022;146:105537. [DOI: 10.1016/j.compbiomed.2022.105537] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
24 Shafiq A, Zubair F, Ambreen A, Suleman M, Yousafi Q, Rasul Niazi Z, Anwar Z, Khan A, Mohammad A, Wei DQ. Investigation of the binding and dynamic features of A.30 variant revealed higher binding of RBD for hACE2 and escapes the neutralizing antibody: A molecular simulation approach. Comput Biol Med 2022;146:105574. [PMID: 35533461 DOI: 10.1016/j.compbiomed.2022.105574] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
25 Zahid S, Gul M, Shafique S, Rashid S. E2(UbcH5B)-derived peptide ligands target HECT E3-E2 binding site and block the Ub-dependent SARS-CoV-2 egression: A computational study. Comput Biol Med 2022;146:105660. [PMID: 35751189 DOI: 10.1016/j.compbiomed.2022.105660] [Reference Citation Analysis]
26 Li F, Yin J, Lu M, Yang Q, Zeng Z, Zhang B, Li Z, Qiu Y, Dai H, Chen Y, Zhu F. ConSIG: consistent discovery of molecular signature from OMIC data. Brief Bioinform 2022:bbac253. [PMID: 35758241 DOI: 10.1093/bib/bbac253] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 7.0] [Reference Citation Analysis]
27 Feng G, Yao H, Li C, Liu R, Huang R, Fan X, Ge R, Miao Q. ME-ACP: Multi-view neural networks with ensemble model for identification of anticancer peptides. Computers in Biology and Medicine 2022;145:105459. [DOI: 10.1016/j.compbiomed.2022.105459] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
28 Dwivedi M, Mukhopadhyay S, Yadav S, Dubey KD. A multidrug efflux protein in Mycobacterium tuberculosis; tap as a potential drug target for drug repurposing. Comput Biol Med 2022;146:105607. [PMID: 35617724 DOI: 10.1016/j.compbiomed.2022.105607] [Reference Citation Analysis]
29 Zhang C, Mou M, Zhou Y, Zhang W, Lian X, Shi S, Lu M, Sun H, Li F, Wang Y, Zeng Z, Li Z, Zhang B, Qiu Y, Zhu F, Gao J. Biological activities of drug inactive ingredients. Brief Bioinform 2022:bbac160. [PMID: 35524477 DOI: 10.1093/bib/bbac160] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
30 Khanal P, Patil VS, Bhandare VV, Dwivedi PS, Shastry C, Patil B, Gurav SS, Harish DR, Roy S. Computational investigation of benzalacetophenone derivatives against SARS-CoV-2 as potential multi-target bioactive compounds. Computers in Biology and Medicine 2022. [DOI: 10.1016/j.compbiomed.2022.105668] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
31 Stalin A, Daniel Reegan A, Rajiv Gandhi M, Saravanan RR, Balakrishna K, Hesham AE, Ignacimuthu S, Zhang Y. Mosquitocidal efficacy of embelin and its derivatives against Aedes aegypti L. and Culex quinquefasciatus Say. (Diptera: Culicidae) and computational analysis of acetylcholinesterase 1 (AChE1) inhibition. Comput Biol Med 2022;146:105535. [PMID: 35487124 DOI: 10.1016/j.compbiomed.2022.105535] [Reference Citation Analysis]
32 Chen Q, Gan Y, Wang K, Li Q, Muddassir Ali M. PregTox: A Resource of Knowledge about Drug Fetal Toxicity. BioMed Research International 2022;2022:1-7. [DOI: 10.1155/2022/4284146] [Reference Citation Analysis]
33 Xia W, Zheng L, Fang J, Li F, Zhou Y, Zeng Z, Zhang B, Li Z, Li H, Zhu F. PFmulDL: a novel strategy enabling multi-class and multi-label protein function annotation by integrating diverse deep learning methods. Comput Biol Med 2022;145:105465. [PMID: 35366467 DOI: 10.1016/j.compbiomed.2022.105465] [Cited by in Crossref: 12] [Cited by in F6Publishing: 14] [Article Influence: 12.0] [Reference Citation Analysis]
34 Zheng Z, Li Y, Lu X, Zhang J, Liu Q, Zhou D, Deng X, Qiu Y, Chen Q, Zheng H, Dai J. A novel mTOR-associated gene signature for predicting prognosis and evaluating tumor immune microenvironment in lung adenocarcinoma. Comput Biol Med 2022;145:105394. [PMID: 35325730 DOI: 10.1016/j.compbiomed.2022.105394] [Reference Citation Analysis]
35 Martinelli DD. Generative machine learning for de novo drug discovery: A systematic review. Comput Biol Med 2022;145:105403. [PMID: 35339849 DOI: 10.1016/j.compbiomed.2022.105403] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 4.0] [Reference Citation Analysis]
36 Li F, Zhou Y, Zhang Y, Yin J, Qiu Y, Gao J, Zhu F. POSREG: proteomic signature discovered by simultaneously optimizing its reproducibility and generalizability. Brief Bioinform 2022:bbac040. [PMID: 35183059 DOI: 10.1093/bib/bbac040] [Cited by in Crossref: 25] [Cited by in F6Publishing: 25] [Article Influence: 25.0] [Reference Citation Analysis]
37 Xue W, Fu T, Deng S, Yang F, Yang J, Zhu F. Molecular Mechanism for the Allosteric Inhibition of the Human Serotonin Transporter by Antidepressant Escitalopram. ACS Chem Neurosci 2022;13:340-51. [PMID: 35041375 DOI: 10.1021/acschemneuro.1c00694] [Cited by in Crossref: 33] [Cited by in F6Publishing: 35] [Article Influence: 33.0] [Reference Citation Analysis]
38 Chen Y, Wang Y, Ding Y, Su X, Wang C. RGCNCDA: Relational graph convolutional network improves circRNA-disease association prediction by incorporating microRNAs. Computers in Biology and Medicine 2022. [DOI: 10.1016/j.compbiomed.2022.105322] [Cited by in Crossref: 7] [Cited by in F6Publishing: 8] [Article Influence: 7.0] [Reference Citation Analysis]