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For: Vella D, Marini S, Vitali F, Di Silvestre D, Mauri G, Bellazzi R. MTGO: PPI Network Analysis Via Topological and Functional Module Identification. Sci Rep 2018;8:5499. [PMID: 29615773 DOI: 10.1038/s41598-018-23672-0] [Cited by in Crossref: 31] [Cited by in F6Publishing: 43] [Article Influence: 7.8] [Reference Citation Analysis]
Number Citing Articles
1 Xiong Q, Li Z, Zhang J, Yang L, Chen X, Gong Y, Cai X, Ke M, Zhu T. Exploration of Hub Genes in Retinopathy of Prematurity Based on Bioinformatics Analysis of the Oxygen-Induced Retinopathy Model. Journal of Ophthalmology 2022;2022:1-12. [DOI: 10.1155/2022/9835524] [Reference Citation Analysis]
2 Robin V, Bodein A, Scott-boyer M, Leclercq M, Périn O, Droit A. Overview of methods for characterization and visualization of a protein–protein interaction network in a multi-omics integration context. Front Mol Biosci 2022;9:962799. [DOI: 10.3389/fmolb.2022.962799] [Reference Citation Analysis]
3 Zhao JY, Zhong ZZ, Zhao LY, Li W. Key pathways and genes in hepatitis B virus-related liver inflammation: Expression profiling and bioinformatics analysis. Medicine (Baltimore) 2022;101:e30229. [PMID: 36042612 DOI: 10.1097/MD.0000000000030229] [Reference Citation Analysis]
4 Wang X, Song X, Liu C, Xing C, Wu T, Zhang Y, Su J, Hao J, Chen X, Zhang Z, Li Y, Liu Y. Active components and molecular mechanism of Syringa oblata Lindl. in the treatment of endometritis based on pharmacology network prediction. Front Vet Sci 2022;9:885952. [DOI: 10.3389/fvets.2022.885952] [Reference Citation Analysis]
5 Wang H, Wang X, Li M, Wang S, Chen Q, Lu S. Identification of key sex-specific pathways and genes in the subcutaneous adipose tissue from pigs using WGCNA method. BMC Genom Data 2022;23. [DOI: 10.1186/s12863-022-01054-w] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
6 Mo C, Wu Y, Ma J, Xie L, Huang Y, Xu Y, Peng H, Chen Z, Zeng M, Mao R. Clinicopathological value of the upregulation of cyclin-dependent kinases regulatory subunit 2 in osteosarcoma. BMC Med Genomics 2022;15:81. [PMID: 35410253 DOI: 10.1186/s12920-022-01234-8] [Reference Citation Analysis]
7 Wang X, Guan H, Liu W, Li H, Ding J, Feng Y, Chen Z. Identification of Immune Markers in Dilated Cardiomyopathies with Heart Failure by Integrated Weighted Gene Coexpression Network Analysis. Genes 2022;13:393. [DOI: 10.3390/genes13030393] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
8 Wu X, Li W, Luo Z, Chen Y. The molecular mechanism of Ligusticum wallichii for improving idiopathic pulmonary fibrosis: A network pharmacology and molecular docking study. Medicine (Baltimore) 2022;101:e28787. [PMID: 35147109 DOI: 10.1097/MD.0000000000028787] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
9 Liu S, Cai X, Wang T, Xu J, Cheng W, Wang X, Wei G, Yan S. Downregulation of ALDH6A1 is a New Marker of Muscle Insulin Resistance in Type 2 Diabetes Mellitus. IJGM 2022;Volume 15:2137-47. [DOI: 10.2147/ijgm.s343727] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
10 Wang B, Ding Y, Zhao P, Li W, Li M, Zhu J, Ye S. Systems pharmacology-based drug discovery and active mechanism of natural products for coronavirus pneumonia (COVID-19): An example using flavonoids. Comput Biol Med 2022;143:105241. [PMID: 35114443 DOI: 10.1016/j.compbiomed.2022.105241] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 4.0] [Reference Citation Analysis]
11 Gupta R, Kumar P. CREB1K292 and HINFPK330 as Putative Common Therapeutic Targets in Alzheimer's and Parkinson's Disease. ACS Omega 2021;6:35780-98. [PMID: 34984308 DOI: 10.1021/acsomega.1c05827] [Reference Citation Analysis]
12 Jiang JS, Zhang Y, Luo Y, Ru Y, Luo Y, Fei XY, Song JK, Ding XJ, Zhang Z, Yang D, Yin SY, Zhang HP, Liu TY, Li B, Kuai L. The Identification of the Biomarkers of Sheng-Ji Hua-Yu Formula Treated Diabetic Wound Healing Using Modular Pharmacology. Front Pharmacol 2021;12:726158. [PMID: 34867329 DOI: 10.3389/fphar.2021.726158] [Reference Citation Analysis]
13 Li JX, Cao XJ, Huang YY, Li YP, Yu ZY, Lin M, Li QY, Chen JC, Guo XG. Investigation of hub gene associated with the infection of Staphylococcus aureus via weighted gene co-expression network analysis. BMC Microbiol 2021;21:329. [PMID: 34852788 DOI: 10.1186/s12866-021-02392-y] [Reference Citation Analysis]
14 Lin D, Zeng Y, Tang D, Cai Y. Study on the Mechanism of Liuwei Dihuang Pills in Treating Parkinson's Disease Based on Network Pharmacology. Biomed Res Int 2021;2021:4490081. [PMID: 34746302 DOI: 10.1155/2021/4490081] [Reference Citation Analysis]
15 Zhu X, Hao M, Yu X, Lin W, Ma X, Xu Q, Cheng L, Kuang H. Dissecting the Pathogenesis of Diabetic Retinopathy Based on the Biological ceRNA Network and Genome Variation Disturbance. Comput Math Methods Med 2021;2021:9833142. [PMID: 34707685 DOI: 10.1155/2021/9833142] [Cited by in F6Publishing: 2] [Reference Citation Analysis]
16 Liu Y, Wang Z, Zhao L. A Potential Three-Gene-Based Diagnostic Signature for Hypertension in Pregnancy. Int J Gen Med 2021;14:6847-56. [PMID: 34703289 DOI: 10.2147/IJGM.S331573] [Reference Citation Analysis]
17 de P Mendes R, Yuan X, Genega EM, Xu X, da F Costa L, Comin CH. Gland context networks: A novel approach for improving prostate cancer identification. Comput Med Imaging Graph 2021;94:101999. [PMID: 34753056 DOI: 10.1016/j.compmedimag.2021.101999] [Reference Citation Analysis]
18 Mengke S, Xing L, Yuyao L, Zhixun L, Lijing L, Jiaqi Y, Xinyuan S. Investigation of the active components and mechanism of Sanao Decoction in treating chronic cough by network pharmacology and molecular docking. Digital Chinese Medicine 2021;4:191-201. [DOI: 10.1016/j.dcmed.2021.09.004] [Reference Citation Analysis]
19 Li Y, Qin J. A Two-Gene-Based Diagnostic Signature for Ruptured Intracranial Aneurysms. Front Cardiovasc Med 2021;8:671655. [PMID: 34485395 DOI: 10.3389/fcvm.2021.671655] [Reference Citation Analysis]
20 Wang Q, Zhang B, Yue Z. Disentangling the Molecular Pathways of Parkinson's Disease using Multiscale Network Modeling. Trends Neurosci 2021;44:182-8. [PMID: 33358606 DOI: 10.1016/j.tins.2020.11.006] [Cited by in F6Publishing: 2] [Reference Citation Analysis]
21 Xie LM, Yin X, Bi J, Luo HM, Cao XJ, Ma YW, Liu YL, Su JW, Lin GL, Guo XG. Identification of potential biomarkers in dengue via integrated bioinformatic analysis. PLoS Negl Trop Dis 2021;15:e0009633. [PMID: 34347790 DOI: 10.1371/journal.pntd.0009633] [Cited by in F6Publishing: 2] [Reference Citation Analysis]
22 Zhang Y, Song JK, Jiang JS, Yin SY, Luo Y, Luo Y, Ding XJ, Ru Y, Liu L, Li W, Kuai L, Li B. Modular pharmacology-based approach to identify hub genes and kernel pathways of taodan granules treated psoriasis. J Ethnopharmacol 2021;280:114485. [PMID: 34348195 DOI: 10.1016/j.jep.2021.114485] [Reference Citation Analysis]
23 Wang J, Chu H, Li H, Yang W, Zhao Y, Shen T, Cary J, Zhang L. A Network Pharmacology Approach to Investigate the Mechanism of Erjing Prescription in Type 2 Diabetes. Evid Based Complement Alternat Med 2021;2021:9933236. [PMID: 34349832 DOI: 10.1155/2021/9933236] [Reference Citation Analysis]
24 Yue Z, Li L, Fu H, Yin Y, Du B, Wang F, Ding Y, Liu Y, Zhao R, Zhang Z, Yu S. Effect of dapagliflozin on diabetic patients with cardiovascular disease via MAPK signalling pathway. J Cell Mol Med 2021;25:7500-12. [PMID: 34258872 DOI: 10.1111/jcmm.16786] [Cited by in F6Publishing: 4] [Reference Citation Analysis]
25 Wang Y, Qiong C, Yang L, Yang S, He K, Xie X. Overlapping Structures Detection in Protein-Protein Interaction Networks Using Community Detection Algorithm Based on Neighbor Clustering Coefficient. Front Genet 2021;12:689515. [PMID: 34249104 DOI: 10.3389/fgene.2021.689515] [Reference Citation Analysis]
26 Li X, Zhu J, Qiu J. Identification of Potential Prognostic Biomarkers for Breast Cancer Based on lncRNA-TF-Associated ceRNA Network and Functional Module. Biomed Res Int 2020;2020:5257896. [PMID: 32802855 DOI: 10.1155/2020/5257896] [Reference Citation Analysis]
27 Yuan G, Shi S, Jia Q, Shi J, Shi S, Zhang X, Shou X, Zhu X, Hu Y. Use of Network Pharmacology to Explore the Mechanism of Gegen (Puerariae lobatae Radix) in the Treatment of Type 2 Diabetes Mellitus Associated with Hyperlipidemia. Evid Based Complement Alternat Med 2021;2021:6633402. [PMID: 33953784 DOI: 10.1155/2021/6633402] [Cited by in F6Publishing: 5] [Reference Citation Analysis]
28 Santa Cruz EC, Zandonadi FDS, Fontes W, Sussulini A. A pilot study indicating the dysregulation of the complement and coagulation cascades in treated schizophrenia and bipolar disorder patients. Biochim Biophys Acta Proteins Proteom 2021;1869:140657. [PMID: 33839315 DOI: 10.1016/j.bbapap.2021.140657] [Cited by in F6Publishing: 5] [Reference Citation Analysis]
29 Ma Y, Chen SS, Feng YY, Wang HL. Identification of novel biomarkers involved in pulmonary arterial hypertension based on multiple-microarray analysis. Biosci Rep 2020;40:BSR20202346. [PMID: 32886110 DOI: 10.1042/BSR20202346] [Cited by in Crossref: 1] [Cited by in F6Publishing: 6] [Article Influence: 1.0] [Reference Citation Analysis]
30 Fang Y, Liu X, Su J. Network Pharmacology Analysis of Traditional Chinese Medicine Formula Shuang Di Shou Zhen Tablets Treating Nonexudative Age-Related Macular Degeneration. Evid Based Complement Alternat Med 2021;2021:6657521. [PMID: 33815556 DOI: 10.1155/2021/6657521] [Cited by in Crossref: 1] [Cited by in F6Publishing: 4] [Article Influence: 1.0] [Reference Citation Analysis]
31 Wang F, Han S, Yang J, Yan W, Hu G. Knowledge-Guided "Community Network" Analysis Reveals the Functional Modules and Candidate Targets in Non-Small-Cell Lung Cancer. Cells 2021;10:402. [PMID: 33669233 DOI: 10.3390/cells10020402] [Cited by in F6Publishing: 2] [Reference Citation Analysis]
32 Jang WJ, Son T, Song SH, Ryu IS, Lee S, Jeong CH. Transcriptional Profiling of Whisker Follicles and of the Striatum in Methamphetamine Self-Administered Rats. Int J Mol Sci 2020;21:E8856. [PMID: 33238484 DOI: 10.3390/ijms21228856] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
33 Shin WH, Kumazawa K, Imai K, Hirokawa T, Kihara D. Current Challenges and Opportunities in Designing Protein-Protein Interaction Targeted Drugs. Adv Appl Bioinform Chem 2020;13:11-25. [PMID: 33209039 DOI: 10.2147/AABC.S235542] [Cited by in Crossref: 3] [Cited by in F6Publishing: 10] [Article Influence: 1.5] [Reference Citation Analysis]
34 Iliopoulos A, Beis G, Apostolou P, Papasotiriou I. Complex Networks, Gene Expression and Cancer Complexity: A Brief Review of Methodology and Applications. CBIO 2020;15:629-55. [DOI: 10.2174/1574893614666191017093504] [Cited by in Crossref: 6] [Cited by in F6Publishing: 1] [Article Influence: 3.0] [Reference Citation Analysis]
35 Halder AK, Denkiewicz M, Sengupta K, Basu S, Plewczynski D. Aggregated network centrality shows non-random structure of genomic and proteomic networks. Methods 2020;181-182:5-14. [PMID: 31740366 DOI: 10.1016/j.ymeth.2019.11.006] [Cited by in Crossref: 1] [Cited by in F6Publishing: 3] [Article Influence: 0.5] [Reference Citation Analysis]
36 Jean-Quartier C, Jeanquartier F, Holzinger A. Open Data for Differential Network Analysis in Glioma. Int J Mol Sci 2020;21:E547. [PMID: 31952211 DOI: 10.3390/ijms21020547] [Cited by in Crossref: 5] [Cited by in F6Publishing: 6] [Article Influence: 2.5] [Reference Citation Analysis]
37 Hasan MR, Paul BK, Ahmed K, Bhuyian T. Design protein-protein interaction network and protein-drug interaction network for common cancer diseases: A bioinformatics approach. Informatics in Medicine Unlocked 2020;18:100311. [DOI: 10.1016/j.imu.2020.100311] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.5] [Reference Citation Analysis]
38 Nazzicari N, Vella D, Coronnello C, Di Silvestre D, Bellazzi R, Marini S. MTGO-SC, A Tool to Explore Gene Modules in Single-Cell RNA Sequencing Data. Front Genet 2019;10:953. [PMID: 31649730 DOI: 10.3389/fgene.2019.00953] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
39 Mujawar S, Mishra R, Pawar S, Gatherer D, Lahiri C. Delineating the Plausible Molecular Vaccine Candidates and Drug Targets of Multidrug-Resistant Acinetobacter baumannii. Front Cell Infect Microbiol 2019;9:203. [PMID: 31281799 DOI: 10.3389/fcimb.2019.00203] [Cited by in Crossref: 11] [Cited by in F6Publishing: 10] [Article Influence: 3.7] [Reference Citation Analysis]
40 Liang L, Chen V, Zhu K, Fan X, Lu X, Lu S. Integrating data and knowledge to identify functional modules of genes: a multilayer approach. BMC Bioinformatics 2019;20:225. [PMID: 31046665 DOI: 10.1186/s12859-019-2800-y] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 2.0] [Reference Citation Analysis]
41 Li S, Cao Y, Li L, Zhang H, Lu X, Bo C, Kong X, Liu Z, Chen L, Liu P, Jiao Y, Wang J, Ning S, Wang L. Building the drug-GO function network to screen significant candidate drugs for myasthenia gravis. PLoS One 2019;14:e0214857. [PMID: 30947317 DOI: 10.1371/journal.pone.0214857] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 1.0] [Reference Citation Analysis]
42 Pawar S, Ashraf MI, Mujawar S, Mishra R, Lahiri C. In silico Identification of the Indispensable Quorum Sensing Proteins of Multidrug Resistant Proteus mirabilis. Front Cell Infect Microbiol 2018;8:269. [PMID: 30131943 DOI: 10.3389/fcimb.2018.00269] [Cited by in Crossref: 14] [Cited by in F6Publishing: 11] [Article Influence: 3.5] [Reference Citation Analysis]
43 Cao B, Deng S, Qin H, Ding P, Chen S, Li G. Detection of Protein Complexes Based on Penalized Matrix Decomposition in a Sparse Protein⁻Protein Interaction Network. Molecules 2018;23:E1460. [PMID: 29914123 DOI: 10.3390/molecules23061460] [Cited by in Crossref: 5] [Cited by in F6Publishing: 6] [Article Influence: 1.3] [Reference Citation Analysis]