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Cited by in F6Publishing
For: Kang JB, Nathan A, Weinand K, Zhang F, Millard N, Rumker L, Moody DB, Korsunsky I, Raychaudhuri S. Efficient and precise single-cell reference atlas mapping with Symphony. Nat Commun 2021;12:5890. [PMID: 34620862 DOI: 10.1038/s41467-021-25957-x] [Cited by in Crossref: 19] [Cited by in F6Publishing: 22] [Article Influence: 19.0] [Reference Citation Analysis]
Number Citing Articles
1 Tang Y, Aryal S, Geng X, Zhou X, Fast VG, Zhang J, Lu R, Zhou Y. TBX20 Improves Contractility and Mitochondrial Function During Direct Human Cardiac Reprogramming. Circulation 2022;146:1518-1536. [DOI: 10.1161/circulationaha.122.059713] [Reference Citation Analysis]
2 Xu Y, Kuppe C, Perales-patón J, Hayat S, Kranz J, Abdallah AT, Nagai J, Li Z, Peisker F, Saritas T, Halder M, Menzel S, Hoeft K, Kenter A, Kim H, van Roeyen CRC, Lehrke M, Moellmann J, Speer T, Buhl EM, Hoogenboezem R, Boor P, Jansen J, Knopp C, Kurth I, Smeets B, Bindels E, Reinders MEJ, Baan C, Gribnau J, Hoorn EJ, Steffens J, Huber TB, Costa I, Floege J, Schneider RK, Saez-rodriguez J, Freedman BS, Kramann R. Adult human kidney organoids originate from CD24+ cells and represent an advanced model for adult polycystic kidney disease. Nat Genet 2022. [DOI: 10.1038/s41588-022-01202-z] [Reference Citation Analysis]
3 Herring CA, Simmons RK, Freytag S, Poppe D, Moffet JJ, Pflueger J, Buckberry S, Vargas-landin DB, Clément O, Echeverría EG, Sutton GJ, Alvarez-franco A, Hou R, Pflueger C, Mcdonald K, Polo JM, Forrest AR, Nowak AK, Voineagu I, Martelotto L, Lister R. Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution. Cell 2022. [DOI: 10.1016/j.cell.2022.09.039] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
4 van der Valk WH, van Beelen ES, Steinhart MR, Nist-lund C, de Groot JC, van Benthem PPG, Koehler KR, Locher H. A Single-Cell Level Comparison of Human Inner Ear Organoids and the Human Cochlea and Vestibular Organs.. [DOI: 10.1101/2022.09.28.509835] [Reference Citation Analysis]
5 Shaymardanov AM, Antonova OA, Sokol AD, Deinichenko KA, Kazakova PG, Milovanov MM, Zakubansky AV, Akinshina AI, Tsypkina AV, Romanova SV, Muhin VE, Mitrofanov SI, Yudin VS, Yudin SM, Makhotenko AV, Keskinov AA, Kraevoy SA, Snigir EA, Svetlichnyy DV, Skvortsova VI. Single-Cell Gene Expression Analysis Revealed Immune Cell Signatures of Delta COVID-19. Cells 2022;11:2950. [DOI: 10.3390/cells11192950] [Reference Citation Analysis]
6 Galdos FX, Xu S, Goodyer WR, Duan L, Huang YV, Lee S, Zhu H, Lee C, Wei N, Lee D, Wu SM. devCellPy is a machine learning-enabled pipeline for automated annotation of complex multilayered single-cell transcriptomic data. Nat Commun 2022;13:5271. [PMID: 36071107 DOI: 10.1038/s41467-022-33045-x] [Reference Citation Analysis]
7 Klocke J, Kim SJ, Skopnik CM, Hinze C, Boltengagen A, Metzke D, Grothgar E, Prskalo L, Wagner L, Freund P, Görlich N, Muench F, Schmidt-Ott KM, Mashreghi MF, Kocks C, Eckardt KU, Rajewsky N, Enghard P. Urinary single-cell sequencing captures kidney injury and repair processes in human acute kidney injury. Kidney Int 2022:S0085-2538(22)00688-3. [PMID: 36049643 DOI: 10.1016/j.kint.2022.07.032] [Reference Citation Analysis]
8 Jing R, Scarfo I, Najia MA, Lummertz da Rocha E, Han A, Sanborn M, Bingham T, Kubaczka C, Jha DK, Falchetti M, Schlaeger TM, North TE, Maus MV, Daley GQ. EZH1 repression generates mature iPSC-derived CAR T cells with enhanced antitumor activity. Cell Stem Cell 2022;29:1181-1196.e6. [PMID: 35931029 DOI: 10.1016/j.stem.2022.06.014] [Cited by in Crossref: 4] [Cited by in F6Publishing: 5] [Article Influence: 4.0] [Reference Citation Analysis]
9 Preissl S, Gaulton KJ, Ren B. Characterizing cis-regulatory elements using single-cell epigenomics. Nat Rev Genet 2022. [PMID: 35840754 DOI: 10.1038/s41576-022-00509-1] [Cited by in Crossref: 3] [Cited by in F6Publishing: 5] [Article Influence: 3.0] [Reference Citation Analysis]
10 Michielsen L, Lotfollahi M, Strobl D, Sikkema L, Reinders MJ, Theis FJ, Mahfouz A. Single-cell reference mapping to construct and extend cell type hierarchies.. [DOI: 10.1101/2022.07.07.499109] [Reference Citation Analysis]
11 Massoni-badosa R, Soler-vila P, Aguilar-fernández S, Nieto JC, Elosua-bayes M, Marchese D, Kulis M, Vilas-zornoza A, Bühler MM, Rashmi S, Alsinet C, Caratù G, Moutinho C, Ruiz S, Lorden P, Lunazzi G, Colomer D, Frigola G, Blevins W, Palomino S, Gomez-cabrero D, Agirre X, Weniger MA, Marini F, Cervera-paz FJ, Baptista PM, Vilaseca I, Prosper F, Küppers R, Gut IG, Campo E, Martin-subero JI, Heyn H. An Atlas of Cells in the Human Tonsil.. [DOI: 10.1101/2022.06.24.497299] [Reference Citation Analysis]
12 Oslund RC, Reyes-Robles T, White CH, Tomlinson JH, Crotty KA, Bowman EP, Chang D, Peterson VM, Li L, Frutos S, Vila-Perelló M, Vlerick D, Cromie K, Perlman DH, Ingale S, Hara SDO, Roberts LR, Piizzi G, Hett EC, Hazuda DJ, Fadeyi OO. Detection of cell-cell interactions via photocatalytic cell tagging. Nat Chem Biol 2022. [PMID: 35654846 DOI: 10.1038/s41589-022-01044-0] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 4.0] [Reference Citation Analysis]
13 Korsunsky I, Wei K, Pohin M, Kim EY, Barone F, Major T, Taylor E, Ravindran R, Kemble S, Watts GFM, Jonsson AH, Jeong Y, Athar H, Windell D, Kang JB, Friedrich M, Turner J, Nayar S, Fisher BA, Raza K, Marshall JL, Croft AP, Tamura T, Sholl LM, Vivero M, Rosas IO, Bowman SJ, Coles M, Frei AP, Lassen K, Filer A, Powrie F, Buckley CD, Brenner MB, Raychaudhuri S. Cross-tissue, single-cell stromal atlas identifies shared pathological fibroblast phenotypes in four chronic inflammatory diseases. Med (N Y) 2022:S2666-6340(22)00184-2. [PMID: 35649411 DOI: 10.1016/j.medj.2022.05.002] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 3.0] [Reference Citation Analysis]
14 Khan AO, Colombo M, Reyat JS, Wang G, Rodriguez-romera A, Wen WX, Murphy L, Grygielska B, Mahoney C, Stone A, Croft A, Bassett D, Poologasundarampillai G, Roy A, Gooding S, Rayes J, Machlus KR, Psaila B. Human bone marrow organoids for disease modelling, discovery and validation of therapeutic targets in hematological malignancies.. [DOI: 10.1101/2022.03.14.483815] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
15 Liu J, Tran V, Vemuri VNP, Byrne A, Borja M, Kim YJ, Agarwal S, Wang R, Awayan K, Murti A, Taychameekiatchai A, Wang B, Emanuel G, He J, Haliburton J, Pisco AO, Neff N. Concordance of MERFISH Spatial Transcriptomics with Bulk and Single-cell RNA Sequencing.. [DOI: 10.1101/2022.03.04.483068] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 3.0] [Reference Citation Analysis]
16 Hao Y, Stuart T, Kowalski M, Choudhary S, Hoffman P, Hartman A, Srivastava A, Molla G, Madad S, Fernandez-granda C, Satija R. Dictionary learning for integrative, multimodal, and scalable single-cell analysis.. [DOI: 10.1101/2022.02.24.481684] [Cited by in Crossref: 6] [Cited by in F6Publishing: 7] [Article Influence: 6.0] [Reference Citation Analysis]
17 Lagattuta KA, Kang JB, Nathan A, Pauken KE, Jonsson AH, Rao DA, Sharpe AH, Ishigaki K, Raychaudhuri S. Repertoire analyses reveal T cell antigen receptor sequence features that influence T cell fate. Nat Immunol 2022. [PMID: 35177831 DOI: 10.1038/s41590-022-01129-x] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 4.0] [Reference Citation Analysis]
18 Lotfollahi M, Rybakov S, Hrovatin K, Hediyeh-zadeh S, Talavera-lópez C, Misharin AV, Theis FJ. Biologically informed deep learning to infer gene program activity in single cells.. [DOI: 10.1101/2022.02.05.479217] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 4.0] [Reference Citation Analysis]
19 Khoo WH, Jackson K, Phetsouphanh C, Zaunders JJ, Alquicira-hernandez J, Yazar S, Ruiz-diaz S, Singh M, Dhenni R, Kyaw W, Tea F, Merheb V, Lee FXZ, Burrell R, Howard-jones A, Koirala A, Zhou L, Yuksel A, Catchpoole DR, Lai CL, Vitagliano TL, Rouet R, Christ D, Tang B, West NP, George S, Gerrard J, Croucher PI, Kelleher AD, Goodnow CG, Sprent JD, Powell JD, Brilot F, Nanan R, Hsu PS, Deenick EK, Britton PN, Phan TG. Clonal dynamics of SARS-CoV-2-specific T cells in children and adults with COVID-19.. [DOI: 10.1101/2022.01.30.478400] [Reference Citation Analysis]
20 Wang J, Xie J, Wang D, Han X, Chen M, Shi G, Jiang L, Zhao M. Megakaryocyte derived immune-stimulating cells regulate host-defense immunity against bacterial pathogens.. [DOI: 10.1101/2021.06.09.447810] [Reference Citation Analysis]