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For: Law GL, Korth MJ, Benecke AG, Katze MG. Systems virology: host-directed approaches to viral pathogenesis and drug targeting. Nat Rev Microbiol 2013;11:455-66. [PMID: 23728212 DOI: 10.1038/nrmicro3036] [Cited by in Crossref: 51] [Cited by in F6Publishing: 44] [Article Influence: 5.7] [Reference Citation Analysis]
Number Citing Articles
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4 Rodrigo G, Daròs JA, Elena SF. Virus-host interactome: Putting the accent on how it changes. J Proteomics 2017;156:1-4. [PMID: 28007618 DOI: 10.1016/j.jprot.2016.12.007] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 1.3] [Reference Citation Analysis]
5 Lasswitz L, Chandra N, Arnberg N, Gerold G. Glycomics and Proteomics Approaches to Investigate Early Adenovirus-Host Cell Interactions.J Mol Biol. 2018;430:1863-1882. [PMID: 29746851 DOI: 10.1016/j.jmb.2018.04.039] [Cited by in Crossref: 15] [Cited by in F6Publishing: 13] [Article Influence: 3.8] [Reference Citation Analysis]
6 Tripathi S, Garcia-Sastre A. Antiviral innate immunity through the lens of systems biology. Virus Res 2016;218:10-7. [PMID: 26657882 DOI: 10.1016/j.virusres.2015.11.024] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 0.7] [Reference Citation Analysis]
7 Sah V, Kumar A, Dhar P, Upmanyu V, Tiwari AK, Wani SA, Sahu AR, Kumar A, Badasara SK, Pandey A, Saxena S, Rai A, Mishra BP, Singh RK, Gandham RK. Signature of genome wide gene expression in classical swine fever virus infected macrophages and PBMCs of indigenous vis-a-vis crossbred pigs. Gene 2020;731:144356. [PMID: 31935504 DOI: 10.1016/j.gene.2020.144356] [Cited by in Crossref: 1] [Article Influence: 0.5] [Reference Citation Analysis]
8 Anderson CS, DeDiego ML, Topham DJ, Thakar J. Boolean Modeling of Cellular and Molecular Pathways Involved in Influenza Infection. Comput Math Methods Med 2016;2016:7686081. [PMID: 26981147 DOI: 10.1155/2016/7686081] [Cited by in Crossref: 7] [Cited by in F6Publishing: 5] [Article Influence: 1.2] [Reference Citation Analysis]
9 Sin J, Mangale V, Thienphrapa W, Gottlieb RA, Feuer R. Recent progress in understanding coxsackievirus replication, dissemination, and pathogenesis. Virology 2015;484:288-304. [PMID: 26142496 DOI: 10.1016/j.virol.2015.06.006] [Cited by in Crossref: 54] [Cited by in F6Publishing: 56] [Article Influence: 7.7] [Reference Citation Analysis]
10 Wani SA, Sahu AR, Saxena S, Hussain S, Pandey A, Kanchan S, Sahoo AP, Mishra B, Tiwari AK, Mishra BP, Gandham RK, Singh RK. Systems biology approach: Panacea for unravelling host-virus interactions and dynamics of vaccine induced immune response. Gene Rep 2016;5:23-9. [PMID: 32289096 DOI: 10.1016/j.genrep.2016.08.002] [Cited by in Crossref: 1] [Article Influence: 0.2] [Reference Citation Analysis]
11 Stanberry L, Mias GI, Haynes W, Higdon R, Snyder M, Kolker E. Integrative analysis of longitudinal metabolomics data from a personal multi-omics profile. Metabolites 2013;3:741-60. [PMID: 24958148 DOI: 10.3390/metabo3030741] [Cited by in Crossref: 37] [Cited by in F6Publishing: 34] [Article Influence: 4.1] [Reference Citation Analysis]
12 Ramamurthy M, Sankar S, Kannangai R, Nandagopal B, Sridharan G. Application of viromics: a new approach to the understanding of viral infections in humans. Virusdisease 2017;28:349-59. [PMID: 29291225 DOI: 10.1007/s13337-017-0415-3] [Cited by in Crossref: 9] [Cited by in F6Publishing: 8] [Article Influence: 1.8] [Reference Citation Analysis]
13 Bertzbach LD, Kaufer BB, Karger A. Applications of mass spectrometry imaging in virus research. Adv Virus Res 2021;109:31-62. [PMID: 33934829 DOI: 10.1016/bs.aivir.2020.10.002] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
14 Swann J, Murry J, Young JA. Cytosolic sulfotransferase 1A1 regulates HIV-1 minus-strand DNA elongation in primary human monocyte-derived macrophages. Virol J 2016;13:30. [PMID: 26906565 DOI: 10.1186/s12985-016-0491-9] [Cited by in Crossref: 5] [Cited by in F6Publishing: 6] [Article Influence: 0.8] [Reference Citation Analysis]
15 Thakar J, Hartmann BM, Marjanovic N, Sealfon SC, Kleinstein SH. Comparative analysis of anti-viral transcriptomics reveals novel effects of influenza immune antagonism. BMC Immunol 2015;16:46. [PMID: 26272204 DOI: 10.1186/s12865-015-0107-y] [Cited by in Crossref: 14] [Cited by in F6Publishing: 14] [Article Influence: 2.0] [Reference Citation Analysis]
16 McBride AA. The Promise of Proteomics in the Study of Oncogenic Viruses. Mol Cell Proteomics 2017;16:S65-74. [PMID: 28104704 DOI: 10.1074/mcp.O116.065201] [Cited by in Crossref: 9] [Cited by in F6Publishing: 8] [Article Influence: 1.8] [Reference Citation Analysis]
17 Gerold G, Bruening J, Pietschmann T. Decoding protein networks during virus entry by quantitative proteomics. Virus Res 2016;218:25-39. [PMID: 26365680 DOI: 10.1016/j.virusres.2015.09.006] [Cited by in Crossref: 18] [Cited by in F6Publishing: 15] [Article Influence: 2.6] [Reference Citation Analysis]
18 Durmuş S, Çakır T, Özgür A, Guthke R. A review on computational systems biology of pathogen-host interactions. Front Microbiol 2015;6:235. [PMID: 25914674 DOI: 10.3389/fmicb.2015.00235] [Cited by in Crossref: 20] [Cited by in F6Publishing: 40] [Article Influence: 2.9] [Reference Citation Analysis]
19 Gerold G, Bruening J, Weigel B, Pietschmann T. Protein Interactions during the Flavivirus and Hepacivirus Life Cycle. Mol Cell Proteomics 2017;16:S75-91. [PMID: 28077444 DOI: 10.1074/mcp.R116.065649] [Cited by in Crossref: 34] [Cited by in F6Publishing: 21] [Article Influence: 6.8] [Reference Citation Analysis]
20 Woo HJ, Reifman J. Quantitative modeling of virus evolutionary dynamics and adaptation in serial passages using empirically inferred fitness landscapes. J Virol 2014;88:1039-50. [PMID: 24198414 DOI: 10.1128/JVI.02958-13] [Cited by in Crossref: 10] [Cited by in F6Publishing: 3] [Article Influence: 1.1] [Reference Citation Analysis]
21 Dou D, Hernández-Neuta I, Wang H, Östbye H, Qian X, Thiele S, Resa-Infante P, Kouassi NM, Sender V, Hentrich K, Mellroth P, Henriques-Normark B, Gabriel G, Nilsson M, Daniels R. Analysis of IAV Replication and Co-infection Dynamics by a Versatile RNA Viral Genome Labeling Method. Cell Rep 2017;20:251-63. [PMID: 28683318 DOI: 10.1016/j.celrep.2017.06.021] [Cited by in Crossref: 41] [Cited by in F6Publishing: 30] [Article Influence: 10.3] [Reference Citation Analysis]
22 Elsemman IE, Mardinoglu A, Shoaie S, Soliman TH, Nielsen J. Systems biology analysis of hepatitis C virus infection reveals the role of copy number increases in regions of chromosome 1q in hepatocellular carcinoma metabolism. Mol Biosyst. 2016;12:1496-1506. [PMID: 27040643 DOI: 10.1039/c5mb00827a] [Cited by in Crossref: 16] [Cited by in F6Publishing: 13] [Article Influence: 3.2] [Reference Citation Analysis]
23 Shieh FS, Jongeneel P, Steffen JD, Lin S, Jain S, Song W, Su YH. ChimericSeq: An open-source, user-friendly interface for analyzing NGS data to identify and characterize viral-host chimeric sequences. PLoS One 2017;12:e0182843. [PMID: 28829778 DOI: 10.1371/journal.pone.0182843] [Cited by in Crossref: 6] [Cited by in F6Publishing: 4] [Article Influence: 1.2] [Reference Citation Analysis]
24 Ferris MT, Heise MT. Quantitative genetics in the study of virus-induced disease. Adv Virus Res 2014;88:193-225. [PMID: 24373313 DOI: 10.1016/B978-0-12-800098-4.00004-0] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 0.9] [Reference Citation Analysis]
25 Enkirch T, Sauber S, Anderson DE, Gan ES, Kenanov D, Maurer-Stroh S, von Messling V. Identification and in vivo Efficacy Assessment of Approved Orally Bioavailable Human Host Protein-Targeting Drugs With Broad Anti-influenza A Activity. Front Immunol 2019;10:1097. [PMID: 31244822 DOI: 10.3389/fimmu.2019.01097] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 2.3] [Reference Citation Analysis]
26 Dahal S, Cheng R, Cheung PK, Been T, Malty R, Geng M, Manianis S, Shkreta L, Jahanshahi S, Toutant J, Chan R, Park S, Brockman MA, Babu M, Mubareka S, Mossman K, Banerjee A, Gray-Owen S, Brown M, Houry WA, Chabot B, Grierson D, Cochrane A. The Thiazole-5-Carboxamide GPS491 Inhibits HIV-1, Adenovirus, and Coronavirus Replication by Altering RNA Processing/Accumulation. Viruses 2021;14:60. [PMID: 35062264 DOI: 10.3390/v14010060] [Reference Citation Analysis]
27 Han L, He H, Li F, Cui X, Xie D, Liu Y, Zheng X, Bai H, Wang S, Bo X. Inferring Infection Patterns Based on a Connectivity Map of Host Transcriptional Responses. Sci Rep 2015;5:15820. [PMID: 26508266 DOI: 10.1038/srep15820] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.3] [Reference Citation Analysis]
28 Pombo JP, Sanyal S. Perturbation of Intracellular Cholesterol and Fatty Acid Homeostasis During Flavivirus Infections. Front Immunol 2018;9:1276. [PMID: 29915602 DOI: 10.3389/fimmu.2018.01276] [Cited by in Crossref: 22] [Cited by in F6Publishing: 21] [Article Influence: 5.5] [Reference Citation Analysis]
29 Kummer S, Flöttmann M, Schwanhäusser B, Sieben C, Veit M, Selbach M, Klipp E, Herrmann A. Alteration of protein levels during influenza virus H1N1 infection in host cells: a proteomic survey of host and virus reveals differential dynamics. PLoS One 2014;9:e94257. [PMID: 24718678 DOI: 10.1371/journal.pone.0094257] [Cited by in Crossref: 29] [Cited by in F6Publishing: 24] [Article Influence: 3.6] [Reference Citation Analysis]
30 Skariyachan S, Challapilli SB, Packirisamy S, Kumargowda ST, Sridhar VS. Recent Aspects on the Pathogenesis Mechanism, Animal Models and Novel Therapeutic Interventions for Middle East Respiratory Syndrome Coronavirus Infections. Front Microbiol 2019;10:569. [PMID: 30984127 DOI: 10.3389/fmicb.2019.00569] [Cited by in Crossref: 44] [Cited by in F6Publishing: 44] [Article Influence: 14.7] [Reference Citation Analysis]
31 Karamitros T, Pogka V, Papadopoulou G, Tsitsilonis O, Evangelidou M, Sympardi S, Mentis A. Dual RNA-Seq Enables Full-Genome Assembly of Measles Virus and Characterization of Host-Pathogen Interactions. Microorganisms 2021;9:1538. [PMID: 34361973 DOI: 10.3390/microorganisms9071538] [Reference Citation Analysis]
32 Lee CH, Grey F. Systems Virology and Human Cytomegalovirus: Using High Throughput Approaches to Identify Novel Host-Virus Interactions During Lytic Infection. Front Cell Infect Microbiol 2020;10:280. [PMID: 32587832 DOI: 10.3389/fcimb.2020.00280] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
33 Colpitts CC, El-Saghire H, Pochet N, Schuster C, Baumert TF. High-throughput approaches to unravel hepatitis C virus-host interactions. Virus Res 2016;218:18-24. [PMID: 26410623 DOI: 10.1016/j.virusres.2015.09.013] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 0.9] [Reference Citation Analysis]
34 Douglass AN, Kain HS, Abdullahi M, Arang N, Austin LS, Mikolajczak SA, Billman ZP, Hume JCC, Murphy SC, Kappe SHI, Kaushansky A. Host-based Prophylaxis Successfully Targets Liver Stage Malaria Parasites. Mol Ther 2015;23:857-65. [PMID: 25648263 DOI: 10.1038/mt.2015.18] [Cited by in Crossref: 23] [Cited by in F6Publishing: 20] [Article Influence: 3.3] [Reference Citation Analysis]
35 Jolles AE, Ezenwa VO. Ungulates as model systems for the study of disease processes in natural populations. J Mammal 2015;96:4-15. [PMID: 32287382 DOI: 10.1093/jmammal/gyu007] [Cited by in Crossref: 21] [Cited by in F6Publishing: 8] [Article Influence: 3.0] [Reference Citation Analysis]
36 Gerold G, Meissner F, Bruening J, Welsch K, Perin PM, Baumert TF, Vondran FW, Kaderali L, Marcotrigiano J, Khan AG, Mann M, Rice CM, Pietschmann T. Quantitative Proteomics Identifies Serum Response Factor Binding Protein 1 as a Host Factor for Hepatitis C Virus Entry. Cell Rep. 2015;12:864-878. [PMID: 26212323 DOI: 10.1016/j.celrep.2015.06.063] [Cited by in Crossref: 39] [Cited by in F6Publishing: 35] [Article Influence: 5.6] [Reference Citation Analysis]
37 Law GL, Tisoncik-Go J, Korth MJ, Katze MG. Drug repurposing: a better approach for infectious disease drug discovery? Curr Opin Immunol 2013;25:588-92. [PMID: 24011665 DOI: 10.1016/j.coi.2013.08.004] [Cited by in Crossref: 46] [Cited by in F6Publishing: 40] [Article Influence: 5.1] [Reference Citation Analysis]
38 Zaas AK, Garner BH, Tsalik EL, Burke T, Woods CW, Ginsburg GS. The current epidemiology and clinical decisions surrounding acute respiratory infections. Trends Mol Med 2014;20:579-88. [PMID: 25201713 DOI: 10.1016/j.molmed.2014.08.001] [Cited by in Crossref: 29] [Cited by in F6Publishing: 25] [Article Influence: 3.6] [Reference Citation Analysis]
39 Charro N, Mota LJ. Approaches targeting the type III secretion system to treat or prevent bacterial infections. Expert Opinion on Drug Discovery 2015;10:373-87. [DOI: 10.1517/17460441.2015.1019860] [Cited by in Crossref: 41] [Cited by in F6Publishing: 35] [Article Influence: 5.9] [Reference Citation Analysis]
40 Schäfer A, Baric RS, Ferris MT. Systems approaches to Coronavirus pathogenesis. Curr Opin Virol 2014;6:61-9. [PMID: 24842079 DOI: 10.1016/j.coviro.2014.04.007] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 0.8] [Reference Citation Analysis]
41 Fernández-Escobar M, Baldanta S, Reyburn H, Guerra S. Use of functional genomics to understand replication deficient poxvirus-host interactions. Virus Res 2016;216:1-15. [PMID: 26519757 DOI: 10.1016/j.virusres.2015.10.008] [Cited by in Crossref: 1] [Article Influence: 0.2] [Reference Citation Analysis]
42 Nayyar N, Kaur I, Malhotra P, Bhatnagar RK. Quantitative proteomics of Sf21 cells during Baculovirus infection reveals progressive host proteome changes and its regulation by viral miRNA. Sci Rep 2017;7:10902. [PMID: 28883418 DOI: 10.1038/s41598-017-10787-z] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 1.2] [Reference Citation Analysis]
43 Xie D, Han L, Luo Y, Liu Y, He S, Bai H, Wang S, Bo X. Exploring the associations of host genes for viral infection revealed by genome-wide RNAi and virus–host protein interactions. Mol BioSyst 2015;11:2511-9. [DOI: 10.1039/c5mb00309a] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 0.4] [Reference Citation Analysis]
44 Yamauchi Y, Greber UF. Principles of Virus Uncoating: Cues and the Snooker Ball. Traffic 2016;17:569-92. [PMID: 26875443 DOI: 10.1111/tra.12387] [Cited by in Crossref: 63] [Cited by in F6Publishing: 59] [Article Influence: 10.5] [Reference Citation Analysis]
45 Bruening J, Lasswitz L, Banse P, Kahl S, Marinach C, Vondran FW, Kaderali L, Silvie O, Pietschmann T, Meissner F, Gerold G. Hepatitis C virus enters liver cells using the CD81 receptor complex proteins calpain-5 and CBLB. PLoS Pathog. 2018;14:e1007111. [PMID: 30024968 DOI: 10.1371/journal.ppat.1007111] [Cited by in Crossref: 28] [Cited by in F6Publishing: 25] [Article Influence: 7.0] [Reference Citation Analysis]