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For: Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Vega Thurber RL, Knight R, Beiko RG, Huttenhower C. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat Biotechnol. 2013;31:814-821. [PMID: 23975157 DOI: 10.1038/nbt.2676] [Cited by in Crossref: 4558] [Cited by in F6Publishing: 4104] [Article Influence: 506.4] [Reference Citation Analysis]
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2 Cuartero J, Özbolat O, Sánchez-navarro V, Weiss J, Zornoza R, Pascual JA, Vivo J, Ros M. Long-Term Compost Amendment Changes Interactions and Specialization in the Soil Bacterial Community, Increasing the Presence of Beneficial N-Cycling Genes in the Soil. Agronomy 2022;12:316. [DOI: 10.3390/agronomy12020316] [Reference Citation Analysis]
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7 Oh JK, Pajarillo EAB, Chae JP, Kim IH, Kang DK. Protective effects of Bacillus subtilis against Salmonella infection in the microbiome of Hy-Line Brown layers. Asian-Australas J Anim Sci 2017;30:1332-9. [PMID: 28423869 DOI: 10.5713/ajas.17.0063] [Cited by in Crossref: 11] [Cited by in F6Publishing: 11] [Article Influence: 2.2] [Reference Citation Analysis]
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13 Wong K, Shaw TI, Oladeinde A, Glenn TC, Oakley B, Molina M. Rapid Microbiome Changes in Freshly Deposited Cow Feces under Field Conditions. Front Microbiol 2016;7:500. [PMID: 27148189 DOI: 10.3389/fmicb.2016.00500] [Cited by in Crossref: 27] [Cited by in F6Publishing: 25] [Article Influence: 4.5] [Reference Citation Analysis]
14 Deng Y, Cheng C, Xie J, Liu S, Ma H, Feng J, Su Y, Guo Z. Coupled changes of bacterial community and function in the gut of mud crab (Scylla Paramamosain) in response to Baimang disease. AMB Express 2019;9:18. [PMID: 30712137 DOI: 10.1186/s13568-019-0745-1] [Cited by in Crossref: 9] [Cited by in F6Publishing: 7] [Article Influence: 3.0] [Reference Citation Analysis]
15 Vieira F, Pecchia J, Segato F, Polikarpov I. Exploring oyster mushroom ( Pleurotus ostreatus ) substrate preparation by varying phase I composting time: changes in bacterial communities and physicochemical composition of biomass impacting mushroom yields. J Appl Microbiol 2019;126:931-44. [DOI: 10.1111/jam.14168] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
16 Huang S, Ji S, Yan H, Hao Y, Zhang J, Wang Y, Cao Z, Li S. The day-to-day stability of the ruminal and fecal microbiota in lactating dairy cows. Microbiologyopen 2020;9:e990. [PMID: 32175695 DOI: 10.1002/mbo3.990] [Cited by in Crossref: 6] [Cited by in F6Publishing: 8] [Article Influence: 3.0] [Reference Citation Analysis]
17 Kirjavainen PV, Karvonen AM, Adams RI, Täubel M, Roponen M, Tuoresmäki P, Loss G, Jayaprakash B, Depner M, Ege MJ, Renz H, Pfefferle PI, Schaub B, Lauener R, Hyvärinen A, Knight R, Heederik DJJ, von Mutius E, Pekkanen J. Farm-like indoor microbiota in non-farm homes protects children from asthma development. Nat Med 2019;25:1089-95. [PMID: 31209334 DOI: 10.1038/s41591-019-0469-4] [Cited by in Crossref: 97] [Cited by in F6Publishing: 88] [Article Influence: 32.3] [Reference Citation Analysis]
18 Brown-Peterson NJ, Krasnec M, Takeshita R, Ryan CN, Griffitt KJ, Lay C, Mayer GD, Bayha KM, Hawkins WE, Lipton I, Morris J, Griffitt RJ. A multiple endpoint analysis of the effects of chronic exposure to sediment contaminated with Deepwater Horizon oil on juvenile Southern flounder and their associated microbiomes. Aquat Toxicol 2015;165:197-209. [PMID: 26092636 DOI: 10.1016/j.aquatox.2015.06.001] [Cited by in Crossref: 53] [Cited by in F6Publishing: 42] [Article Influence: 7.6] [Reference Citation Analysis]
19 Kim JK, Lee KE, Lee SA, Jang HM, Kim DH. Interplay Between Human Gut Bacteria Escherichia coli and Lactobacillus mucosae in the Occurrence of Neuropsychiatric Disorders in Mice. Front Immunol 2020;11:273. [PMID: 32158447 DOI: 10.3389/fimmu.2020.00273] [Cited by in Crossref: 15] [Cited by in F6Publishing: 15] [Article Influence: 7.5] [Reference Citation Analysis]
20 Chew YM, Lye S, Md. Salleh M, Yahya A. 16S rRNA metagenomic analysis of the symbiotic community structures of bacteria in foregut, midgut, and hindgut of the wood-feeding termite Bulbitermes sp. Symbiosis 2018;76:187-97. [DOI: 10.1007/s13199-018-0544-5] [Cited by in Crossref: 11] [Cited by in F6Publishing: 1] [Article Influence: 2.8] [Reference Citation Analysis]
21 Kim H, Kim S, Jung S. Instruction of microbiome taxonomic profiling based on 16S rRNA sequencing. J Microbiol 2020;58:193-205. [DOI: 10.1007/s12275-020-9556-y] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 2.5] [Reference Citation Analysis]
22 Toole DR, Zhao J, Martens-habbena W, Strauss SL. Bacterial functional prediction tools detect but underestimate metabolic diversity compared to shotgun metagenomics in southwest Florida soils. Applied Soil Ecology 2021;168:104129. [DOI: 10.1016/j.apsoil.2021.104129] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
23 Sánchez-Alcoholado L, Gutiérrez-Repiso C, Gómez-Pérez AM, García-Fuentes E, Tinahones FJ, Moreno-Indias I. Gut microbiota adaptation after weight loss by Roux-en-Y gastric bypass or sleeve gastrectomy bariatric surgeries. Surg Obes Relat Dis 2019;15:1888-95. [PMID: 31648978 DOI: 10.1016/j.soard.2019.08.551] [Cited by in Crossref: 22] [Cited by in F6Publishing: 20] [Article Influence: 7.3] [Reference Citation Analysis]
24 Dai L, Zhang G, Yu Z, Ding H, Xu Y, Zhang Z. Effect of Drought Stress and Developmental Stages on Microbial Community Structure and Diversity in Peanut Rhizosphere Soil. Int J Mol Sci 2019;20:E2265. [PMID: 31071918 DOI: 10.3390/ijms20092265] [Cited by in Crossref: 21] [Cited by in F6Publishing: 11] [Article Influence: 7.0] [Reference Citation Analysis]
25 Haque MM, Mande SS. Decoding the microbiome for the development of translational applications: Overview, challenges and pitfalls. J Biosci 2019;44. [DOI: 10.1007/s12038-019-9932-0] [Reference Citation Analysis]
26 Jun SR, Robeson MS, Hauser LJ, Schadt CW, Gorin AA. PanFP: pangenome-based functional profiles for microbial communities. BMC Res Notes 2015;8:479. [PMID: 26409790 DOI: 10.1186/s13104-015-1462-8] [Cited by in Crossref: 24] [Cited by in F6Publishing: 25] [Article Influence: 3.4] [Reference Citation Analysis]
27 Mei X, Wu C, Zhao J, Yan T, Jiang P. Community Structure of Bacteria Associated With Drifting Sargassum horneri, the Causative Species of Golden Tide in the Yellow Sea. Front Microbiol 2019;10:1192. [PMID: 31191503 DOI: 10.3389/fmicb.2019.01192] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
28 Creer S, Deiner K, Frey S, Porazinska D, Taberlet P, Thomas WK, Potter C, Bik HM, Freckleton R. The ecologist's field guide to sequence‐based identification of biodiversity. Methods Ecol Evol 2016;7:1008-18. [DOI: 10.1111/2041-210x.12574] [Cited by in Crossref: 190] [Article Influence: 31.7] [Reference Citation Analysis]
29 Li Y, Cope HA, Rahman SM, Li G, Nielsen PH, Elfick A, Gu AZ. Toward Better Understanding of EBPR Systems via Linking Raman-Based Phenotypic Profiling with Phylogenetic Diversity. Environ Sci Technol 2018;52:8596-606. [DOI: 10.1021/acs.est.8b01388] [Cited by in Crossref: 14] [Cited by in F6Publishing: 11] [Article Influence: 3.5] [Reference Citation Analysis]
30 Shi L, Li X, Zhang Q, Peng Y. Effectively stimulating partial denitrification to utilize dissolved slowly-biodegradable organic matter by introducing in-situ biosorption and hydrolytic acidification. Bioresour Technol 2021;333:125175. [PMID: 33895667 DOI: 10.1016/j.biortech.2021.125175] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 3.0] [Reference Citation Analysis]
31 Vieira-Silva S, Falony G, Darzi Y, Lima-Mendez G, Garcia Yunta R, Okuda S, Vandeputte D, Valles-Colomer M, Hildebrand F, Chaffron S, Raes J. Species-function relationships shape ecological properties of the human gut microbiome. Nat Microbiol 2016;1:16088. [PMID: 27573110 DOI: 10.1038/nmicrobiol.2016.88] [Cited by in Crossref: 111] [Cited by in F6Publishing: 93] [Article Influence: 18.5] [Reference Citation Analysis]
32 Wang L, Xin Y, Zhou J, Tian Z, Liu C, Yu X, Meng X, Jiang W, Zhao S, Dong Q. Gastric Mucosa-Associated Microbial Signatures of Early Gastric Cancer.Front Microbiol. 2020;11:1548. [PMID: 32733423 DOI: 10.3389/fmicb.2020.01548] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
33 Chao X, Liu Y, Fan Q, Shi H, Wang S, Lang J. The role of the vaginal microbiome in distinguishing female chronic pelvic pain caused by endometriosis/adenomyosis. Ann Transl Med 2021;9:771. [PMID: 34268384 DOI: 10.21037/atm-20-4586] [Reference Citation Analysis]
34 Takegami M, Hamaguchi M, Miyoshi T, Munekawa C, Yoshimura T, Nakajima H, Kimura T, Okamura T, Hashimoto Y, Nakanishi N, Kitao Y, Kinoshita K, Fukui M. Effect of matcha consumption on gut microbiota in healthy Japanese individuals: study protocol for a double-blind crossover interventional study. J Clin Biochem Nutr . [DOI: 10.3164/jcbn.21-110] [Reference Citation Analysis]
35 Nguyen STT, Vardeh DP, Nelson TM, Pearson LA, Kinsela AS, Neilan BA. Bacterial community structure and metabolic potential in microbialite-forming mats from South Australian saline lakes. Geobiology 2022. [PMID: 35312212 DOI: 10.1111/gbi.12489] [Reference Citation Analysis]
36 Jiménez RR, Carfagno A, Linhoff L, Gratwicke B, Woodhams DC, Chafran LS, Bletz MC, Bishop B, Muletz-Wolz CR. Inhibitory Bacterial Diversity and Mucosome Function Differentiate Susceptibility of Appalachian Salamanders to Chytrid Fungal Infection. Appl Environ Microbiol 2022;88:e0181821. [PMID: 35348389 DOI: 10.1128/aem.01818-21] [Reference Citation Analysis]
37 Turpin W, Bedrani L, Espin-Garcia O, Xu W, Silverberg MS, Smith MI, Guttman DS, Griffiths A, Moayyedi P, Panaccione R, Huynh H, Steinhart H, Aumais G, Shestopaloff K, Dieleman LA, Turner D, Paterson AD, Croitoru K. FUT2 genotype and secretory status are not associated with fecal microbial composition and inferred function in healthy subjects. Gut Microbes 2018;9:357-68. [PMID: 29533703 DOI: 10.1080/19490976.2018.1445956] [Cited by in Crossref: 11] [Cited by in F6Publishing: 16] [Article Influence: 2.8] [Reference Citation Analysis]
38 Le Bastard Q, Chevallier P, Montassier E. Gut microbiome in allogeneic hematopoietic stem cell transplantation and specific changes associated with acute graft vs host disease. World J Gastroenterol 2021; 27(45): 7792-7800 [PMID: 34963742 DOI: 10.3748/wjg.v27.i45.7792] [Reference Citation Analysis]
39 Nagpal R, Neth BJ, Wang S, Craft S, Yadav H. Modified Mediterranean-ketogenic diet modulates gut microbiome and short-chain fatty acids in association with Alzheimer's disease markers in subjects with mild cognitive impairment. EBioMedicine 2019;47:529-42. [PMID: 31477562 DOI: 10.1016/j.ebiom.2019.08.032] [Cited by in Crossref: 94] [Cited by in F6Publishing: 84] [Article Influence: 31.3] [Reference Citation Analysis]
40 Ma B, Liang J, Dai M, Wang J, Luo J, Zhang Z, Jing J. Altered Gut Microbiota in Chinese Children With Autism Spectrum Disorders. Front Cell Infect Microbiol 2019;9:40. [PMID: 30895172 DOI: 10.3389/fcimb.2019.00040] [Cited by in Crossref: 39] [Cited by in F6Publishing: 37] [Article Influence: 13.0] [Reference Citation Analysis]
41 Du R, Bei H, Jia L, Huang C, Chen Q, Tao C, Chen J, Bo H. Danggui Buxue Tang restores antibiotic-induced metabolic disorders by remodeling the gut microbiota. Journal of Ethnopharmacology 2020;259:112953. [DOI: 10.1016/j.jep.2020.112953] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
42 Yilmaz P, Yarza P, Rapp JZ, Glöckner FO. Expanding the World of Marine Bacterial and Archaeal Clades. Front Microbiol 2015;6:1524. [PMID: 26779174 DOI: 10.3389/fmicb.2015.01524] [Cited by in Crossref: 59] [Cited by in F6Publishing: 49] [Article Influence: 9.8] [Reference Citation Analysis]
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44 Kumar H, du Toit E, Kulkarni A, Aakko J, Linderborg KM, Zhang Y, Nicol MP, Isolauri E, Yang B, Collado MC, Salminen S. Distinct Patterns in Human Milk Microbiota and Fatty Acid Profiles Across Specific Geographic Locations. Front Microbiol 2016;7:1619. [PMID: 27790209 DOI: 10.3389/fmicb.2016.01619] [Cited by in Crossref: 111] [Cited by in F6Publishing: 105] [Article Influence: 18.5] [Reference Citation Analysis]
45 Sandell MA, Collado MC. Genetic variation in the TAS2R38 taste receptor contributes to the oral microbiota in North and South European locations: a pilot study. Genes Nutr 2018;13. [DOI: 10.1186/s12263-018-0617-3] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
46 Vipindas PV, Jabir T, Rahiman KMM, Rehitha TV, Sudheesh V, Jesmi Y, Hatha AAM. Impact of anthropogenic organic matter on bacterial community distribution in the continental shelf sediments of southeastern Arabian Sea. Mar Pollut Bull 2021;174:113227. [PMID: 34883441 DOI: 10.1016/j.marpolbul.2021.113227] [Reference Citation Analysis]
47 Wensel CR, Pluznick JL, Salzberg SL, Sears CL. Next-generation sequencing: insights to advance clinical investigations of the microbiome. J Clin Invest 2022;132:e154944. [PMID: 35362479 DOI: 10.1172/JCI154944] [Reference Citation Analysis]
48 Al Bataineh MT, Dash NR, Bel Lassen P, Banimfreg BH, Nada AM, Belda E, Clément K. Revealing links between gut microbiome and its fungal community in Type 2 Diabetes Mellitus among Emirati subjects: A pilot study. Sci Rep 2020;10:9624. [PMID: 32541680 DOI: 10.1038/s41598-020-66598-2] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
49 Feng J, He Y, Liu D, Li L, Chen J, Yu J. The constitution and functional prediction of the microbiota in necrotizing enterocolitis with a gestational age of over 28 weeks. Medicine (Baltimore) 2019;98:e17206. [PMID: 31577710 DOI: 10.1097/MD.0000000000017206] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
50 Liu F, Hu X, Zhao X, Guo H, Zhao Y. Microbial Community Structures' Response to Seasonal Variation in a Full-Scale Municipal Wastewater Treatment Plant. Environmental Engineering Science 2019;36:172-9. [DOI: 10.1089/ees.2018.0280] [Cited by in Crossref: 8] [Cited by in F6Publishing: 5] [Article Influence: 2.7] [Reference Citation Analysis]
51 Lin X, Hetharua B, Lin L, Xu H, Zheng T, He Z, Tian Y. Mangrove Sediment Microbiome: Adaptive Microbial Assemblages and Their Routed Biogeochemical Processes in Yunxiao Mangrove National Nature Reserve, China. Microb Ecol 2019;78:57-69. [DOI: 10.1007/s00248-018-1261-6] [Cited by in Crossref: 19] [Cited by in F6Publishing: 16] [Article Influence: 4.8] [Reference Citation Analysis]
52 Yan M, Li W, Chen X, He Y, Zhang X, Gong H. A preliminary study of the association between colonization of microorganism on microplastics and intestinal microbiota in shrimp under natural conditions. J Hazard Mater 2021;408:124882. [PMID: 33370700 DOI: 10.1016/j.jhazmat.2020.124882] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 2.5] [Reference Citation Analysis]
53 Zhang X, Ji Z, Shao Y, Guo C, Zhou H, Liu L, Qu Y. Seasonal variations of soil bacterial communities in Suaeda wetland of Shuangtaizi River estuary, Northeast China. J Environ Sci (China) 2020;97:45-53. [PMID: 32933739 DOI: 10.1016/j.jes.2020.04.012] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 2.0] [Reference Citation Analysis]
54 Wang H, Wan X, Xie G, Dong X, Wang X, Huang J. Insights into the histopathology and microbiome of Pacific white shrimp, Penaeus vannamei, suffering from white feces syndrome. Aquaculture 2020;527:735447. [DOI: 10.1016/j.aquaculture.2020.735447] [Cited by in Crossref: 8] [Cited by in F6Publishing: 4] [Article Influence: 4.0] [Reference Citation Analysis]
55 Fernandes CC, Kishi LT, Lopes EM, Omori WP, Souza JAM, Alves LMC, Lemos EGM. Bacterial communities in mining soils and surrounding areas under regeneration process in a former ore mine. Braz J Microbiol 2018;49:489-502. [PMID: 29452849 DOI: 10.1016/j.bjm.2017.12.006] [Cited by in Crossref: 19] [Cited by in F6Publishing: 7] [Article Influence: 4.8] [Reference Citation Analysis]
56 Wang Y, Zhang J, Deji C, Fan J, Miao X, Li S, Zeng X, Guan F. Differential perturbations of gut microbial profiles and co-occurrence networks among phases of methamphetamine-induced conditioned place preference. J Neurosci Res 2021. [PMID: 34510511 DOI: 10.1002/jnr.24963] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
57 Arias-jayo N, Abecia L, Lavín JL, Tueros I, Arranz S, Ramírez-garcía A, Pardo MA. Host-microbiome interactions in response to a high-saturated fat diet and fish-oil supplementation in zebrafish adult. Journal of Functional Foods 2019;60:103416. [DOI: 10.1016/j.jff.2019.103416] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
58 Tuck CJ, Caminero A, Jiménez Vargas NN, Soltys CL, Jaramillo Polanco JO, Lopez Lopez CD, Constante M, Lourenssen SR, Verdu EF, Muir JG, Lomax AE, Reed DE, Vanner SJ. The impact of dietary fermentable carbohydrates on a postinflammatory model of irritable bowel syndrome. Neurogastroenterol Motil 2019;31:e13675. [PMID: 31290223 DOI: 10.1111/nmo.13675] [Cited by in Crossref: 5] [Cited by in F6Publishing: 3] [Article Influence: 1.7] [Reference Citation Analysis]
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60 Li Y, Liu H, Zhang L, Yang Y, Lin Y, Zhuo Y, Fang Z, Che L, Feng B, Xu S, Li J, Wu. Maternal Dietary Fiber Composition during Gestation Induces Changes in Offspring Antioxidative Capacity, Inflammatory Response, and Gut Microbiota in a Sow Model. Int J Mol Sci 2019;21:E31. [PMID: 31861629 DOI: 10.3390/ijms21010031] [Cited by in Crossref: 18] [Cited by in F6Publishing: 11] [Article Influence: 6.0] [Reference Citation Analysis]
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63 Chen S, Li Y, Fan Z, Liu F, Liu H, Wang L, Wu H. Soil bacterial community dynamics following bioaugmentation with Paenarthrobacter sp. W11 in atrazine-contaminated soil. Chemosphere 2021;282:130976. [PMID: 34089999 DOI: 10.1016/j.chemosphere.2021.130976] [Reference Citation Analysis]
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