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For: Zhang Q, Gupta S, Schipper DL, Kowalczyk GJ, Mancini AE, Faeder JR, Lee REC. NF-κB Dynamics Discriminate between TNF Doses in Single Cells. Cell Syst 2017;5:638-645.e5. [PMID: 29128333 DOI: 10.1016/j.cels.2017.10.011] [Cited by in Crossref: 34] [Cited by in F6Publishing: 26] [Article Influence: 6.8] [Reference Citation Analysis]
Number Citing Articles
1 Gupta S, Lee REC, Faeder JR. Parallel Tempering with Lasso for model reduction in systems biology. PLoS Comput Biol 2020;16:e1007669. [PMID: 32150537 DOI: 10.1371/journal.pcbi.1007669] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]
2 Zambrano S, Loffreda A, Carelli E, Stefanelli G, Colombo F, Bertrand E, Tacchetti C, Agresti A, Bianchi ME, Molina N, Mazza D. First Responders Shape a Prompt and Sharp NF-κB-Mediated Transcriptional Response to TNF-α. iScience 2020;23:101529. [PMID: 33083759 DOI: 10.1016/j.isci.2020.101529] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 2.0] [Reference Citation Analysis]
3 Colombo F, Zambrano S, Agresti A. NF-κB, the Importance of Being Dynamic: Role and Insights in Cancer. Biomedicines 2018;6:E45. [PMID: 29673148 DOI: 10.3390/biomedicines6020045] [Cited by in Crossref: 18] [Cited by in F6Publishing: 17] [Article Influence: 4.5] [Reference Citation Analysis]
4 Pabon NA, Zhang Q, Cruz JA, Schipper DL, Camacho CJ, Lee REC. A network-centric approach to drugging TNF-induced NF-κB signaling. Nat Commun 2019;10:860. [PMID: 30808860 DOI: 10.1038/s41467-019-08802-0] [Cited by in Crossref: 13] [Cited by in F6Publishing: 12] [Article Influence: 4.3] [Reference Citation Analysis]
5 Zielińska K, Katanaev V. Information Theory: New Look at Oncogenic Signaling Pathways. Trends in Cell Biology 2019;29:862-75. [DOI: 10.1016/j.tcb.2019.08.005] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 2.0] [Reference Citation Analysis]
6 Suderman R, Deeds EJ. Intrinsic limits of information transmission in biochemical signalling motifs. Interface Focus 2018;8:20180039. [PMID: 30443336 DOI: 10.1098/rsfs.2018.0039] [Cited by in Crossref: 5] [Cited by in F6Publishing: 3] [Article Influence: 1.3] [Reference Citation Analysis]
7 Sai A, Kong N. Exploring the information transmission properties of noise-induced dynamics: application to glioma differentiation. BMC Bioinformatics 2019;20:375. [PMID: 31272368 DOI: 10.1186/s12859-019-2970-7] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
8 Patel P, Drayman N, Liu P, Bilgic M, Tay S. Computer vision reveals hidden variables underlying NF-κB activation in single cells. Sci Adv 2021;7:eabg4135. [PMID: 34678061 DOI: 10.1126/sciadv.abg4135] [Reference Citation Analysis]
9 Hurbain J, Labavić D, Thommen Q, Pfeuty B. Theoretical study of the impact of adaptation on cell-fate heterogeneity and fractional killing. Sci Rep 2020;10:17429. [PMID: 33060729 DOI: 10.1038/s41598-020-74238-y] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
10 Cruz JA, Mokashi CS, Kowalczyk GJ, Guo Y, Zhang Q, Gupta S, Schipper DL, Smeal SW, Lee REC. A variable-gain stochastic pooling motif mediates information transfer from receptor assemblies into NF-κB. Sci Adv 2021;7:eabi9410. [PMID: 34301608 DOI: 10.1126/sciadv.abi9410] [Reference Citation Analysis]
11 Sumit M, Jovic A, Neubig RR, Takayama S, Linderman JJ. A Two-Pulse Cellular Stimulation Test Elucidates Variability and Mechanisms in Signaling Pathways. Biophys J 2019;116:962-73. [PMID: 30782397 DOI: 10.1016/j.bpj.2019.01.022] [Cited by in Crossref: 6] [Cited by in F6Publishing: 3] [Article Influence: 2.0] [Reference Citation Analysis]
12 Bass VL, Wong VC, Bullock ME, Gaudet S, Miller-Jensen K. TNF stimulation primarily modulates transcriptional burst size of NF-κB-regulated genes. Mol Syst Biol 2021;17:e10127. [PMID: 34288498 DOI: 10.15252/msb.202010127] [Reference Citation Analysis]
13 Gross SM, Dane MA, Bucher E, Heiser LM. Individual Cells Can Resolve Variations in Stimulus Intensity along the IGF-PI3K-AKT Signaling Axis. Cell Syst 2019;9:580-588.e4. [PMID: 31838146 DOI: 10.1016/j.cels.2019.11.005] [Cited by in Crossref: 8] [Cited by in F6Publishing: 3] [Article Influence: 2.7] [Reference Citation Analysis]
14 Mokashi CS, Schipper DL, Qasaimeh MA, Lee REC. A System for Analog Control of Cell Culture Dynamics to Reveal Capabilities of Signaling Networks. iScience 2019;19:586-96. [PMID: 31446223 DOI: 10.1016/j.isci.2019.08.010] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 1.7] [Reference Citation Analysis]
15 Singh M, Warita K, Warita T, Faeder JR, Lee REC, Sant S, Oltvai ZN. Shift from stochastic to spatially-ordered expression of serine-glycine synthesis enzymes in 3D microtumors. Sci Rep 2018;8:9388. [PMID: 29925909 DOI: 10.1038/s41598-018-27266-8] [Cited by in Crossref: 5] [Cited by in F6Publishing: 6] [Article Influence: 1.3] [Reference Citation Analysis]
16 Yan F, Liu L, Wang Q. Combinatorial dynamics of protein synthesis time delay and negative feedback loop in NF-κB signalling pathway. IET Syst Biol 2020;14:284-91. [PMID: 33095749 DOI: 10.1049/iet-syb.2020.0034] [Reference Citation Analysis]
17 Benary U, Wolf J. Controlling Nuclear NF-κB Dynamics by β-TrCP-Insights from a Computational Model. Biomedicines 2019;7:E40. [PMID: 31137887 DOI: 10.3390/biomedicines7020040] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 1.3] [Reference Citation Analysis]
18 Spinosa PC, Kinnunen PC, Humphries BA, Luker GD, Luker KE, Linderman JJ. Pre-existing Cell States Control Heterogeneity of Both EGFR and CXCR4 Signaling. Cell Mol Bioeng 2021;14:49-64. [PMID: 33643466 DOI: 10.1007/s12195-020-00640-1] [Reference Citation Analysis]
19 Kowalczyk GJ, Cruz JA, Guo Y, Zhang Q, Sauerwald N, Lee REC. dNEMO: a tool for quantification of mRNA and punctate structures in time-lapse images of single cells. Bioinformatics 2021;37:677-83. [PMID: 33051642 DOI: 10.1093/bioinformatics/btaa874] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
20 Ramji R, Alexander AF, Muñoz-Rojas AR, Kellman LN, Miller-Jensen K. Microfluidic platform enables live-cell imaging of signaling and transcription combined with multiplexed secretion measurements in the same single cells. Integr Biol (Camb) 2019;11:142-53. [PMID: 31242304 DOI: 10.1093/intbio/zyz013] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.5] [Reference Citation Analysis]
21 Namba MD, Leyrer-Jackson JM, Nagy EK, Olive MF, Neisewander JL. Neuroimmune Mechanisms as Novel Treatment Targets for Substance Use Disorders and Associated Comorbidities. Front Neurosci 2021;15:650785. [PMID: 33935636 DOI: 10.3389/fnins.2021.650785] [Reference Citation Analysis]
22 Jeknić S, Kudo T, Covert MW. Techniques for Studying Decoding of Single Cell Dynamics. Front Immunol 2019;10:755. [PMID: 31031756 DOI: 10.3389/fimmu.2019.00755] [Cited by in Crossref: 11] [Cited by in F6Publishing: 9] [Article Influence: 3.7] [Reference Citation Analysis]
23 Jetka T, Nienałtowski K, Winarski T, Błoński S, Komorowski M. Information-theoretic analysis of multivariate single-cell signaling responses. PLoS Comput Biol 2019;15:e1007132. [PMID: 31299056 DOI: 10.1371/journal.pcbi.1007132] [Cited by in Crossref: 16] [Cited by in F6Publishing: 12] [Article Influence: 5.3] [Reference Citation Analysis]
24 Karolak A, Branciamore S, McCune JS, Lee PP, Rodin AS, Rockne RC. Concepts and Applications of Information Theory to Immuno-Oncology. Trends Cancer 2021;7:335-46. [PMID: 33618998 DOI: 10.1016/j.trecan.2020.12.013] [Reference Citation Analysis]
25 Maity A, Wollman R. Information transmission from NFkB signaling dynamics to gene expression. PLoS Comput Biol 2020;16:e1008011. [PMID: 32797040 DOI: 10.1371/journal.pcbi.1008011] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.5] [Reference Citation Analysis]
26 Brignall R, Moody AT, Mathew S, Gaudet S. Considering Abundance, Affinity, and Binding Site Availability in the NF-κB Target Selection Puzzle. Front Immunol 2019;10:609. [PMID: 30984185 DOI: 10.3389/fimmu.2019.00609] [Cited by in Crossref: 15] [Cited by in F6Publishing: 12] [Article Influence: 5.0] [Reference Citation Analysis]
27 Minas G, Woodcock DJ, Ashall L, Harper CV, White MRH, Rand DA. Multiplexing information flow through dynamic signalling systems. PLoS Comput Biol 2020;16:e1008076. [PMID: 32745094 DOI: 10.1371/journal.pcbi.1008076] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]