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For: Merienne N, Meunier C, Schneider A, Seguin J, Nair SS, Rocher AB, Le Gras S, Keime C, Faull R, Pellerin L, Chatton JY, Neri C, Merienne K, Déglon N. Cell-Type-Specific Gene Expression Profiling in Adult Mouse Brain Reveals Normal and Disease-State Signatures. Cell Rep 2019;26:2477-2493.e9. [PMID: 30811995 DOI: 10.1016/j.celrep.2019.02.003] [Cited by in Crossref: 45] [Cited by in F6Publishing: 34] [Article Influence: 15.0] [Reference Citation Analysis]
Number Citing Articles
1 Riggins TE, Whitsitt QA, Saxena A, Hunter E, Hunt B, Thompson CH, Moore MG, Purcell EK. Gene Expression Changes in Cultured Reactive Rat Astrocyte Models and Comparison to Device-Associated Effects in the Brain. bioRxiv 2023:2023. [PMID: 36712012 DOI: 10.1101/2023.01.06.522870] [Reference Citation Analysis]
2 Mengaziol J, Dunn AD, Salimando G, Wooldridge L, Crues-Muncunill J, Eacret D, Chen C, Bland K, Liu-Chen LY, Ehrlich ME, Corder G, Blendy JA. A novel Oprm1-Cre mouse maintains endogenous expression, function and enables detailed molecular characterization of μ-opioid receptor cells. PLoS One 2022;17:e0270317. [PMID: 36534642 DOI: 10.1371/journal.pone.0270317] [Reference Citation Analysis]
3 Zhang L, Liu Y, Lu Y, Wang G. Targeting epigenetics as a promising therapeutic strategy for treatment of neurodegenerative diseases. Biochemical Pharmacology 2022;206:115295. [DOI: 10.1016/j.bcp.2022.115295] [Reference Citation Analysis]
4 Alcalá-Vida R, Lotz C, Brulé B, Seguin J, Decraene C, Awada A, Bombardier A, Cosquer B, de Vasconcelos AP, Brouillet E, Cassel JC, Boutillier AL, Merienne K. Altered activity-regulated H3K9 acetylation at TGF-beta signaling genes during egocentric memory in Huntington's disease. Prog Neurobiol 2022;:102363. [PMID: 36179935 DOI: 10.1016/j.pneurobio.2022.102363] [Reference Citation Analysis]
5 Hemonnot-girard A, Meersseman C, Pastore M, Garcia V, Linck N, Rey C, Chebbi A, Jeanneteau F, Ginsberg SD, Lachuer J, Reynes C, Rassendren F, Hirbec H. Comparative analysis of transcriptome remodeling in plaque-associated and plaque-distant microglia during amyloid-β pathology progression in mice. J Neuroinflammation 2022;19. [DOI: 10.1186/s12974-022-02581-0] [Reference Citation Analysis]
6 Song S, Creus Muncunill J, Galicia Aguirre C, Tshilenge K, Hamilton BW, Gerencser AA, Benlhabib H, Cirnaru M, Leid M, Mooney SD, Ellerby LM, Ehrlich ME. Postnatal Conditional Deletion of Bcl11b in Striatal Projection Neurons Mimics the Transcriptional Signature of Huntington’s Disease. Biomedicines 2022;10:2377. [DOI: 10.3390/biomedicines10102377] [Reference Citation Analysis]
7 Paldino E, D'angelo V, Massaro Cenere M, Guatteo E, Barattucci S, Migliorato G, Berretta N, Riess O, Sancesario G, Mercuri NB, Fusco FR. Neuropathology of the Basal Ganglia in SNCA Transgenic Rat Model of Parkinson's Disease: Involvement of Parvalbuminergic Interneurons and Glial-Derived Neurotropic Factor. Int J Mol Sci 2022;23:10126. [PMID: 36077524 DOI: 10.3390/ijms231710126] [Reference Citation Analysis]
8 Jurcau A. Molecular Pathophysiological Mechanisms in Huntington's Disease. Biomedicines 2022;10:1432. [PMID: 35740453 DOI: 10.3390/biomedicines10061432] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
9 Kim HB, Lu Y, Oh SC, Morris J, Miyashiro K, Kim J, Eberwine J, Sul JY. Astrocyte ethanol exposure reveals persistent and defined calcium response subtypes and associated gene signatures. J Biol Chem 2022;:102147. [PMID: 35716779 DOI: 10.1016/j.jbc.2022.102147] [Reference Citation Analysis]
10 Rojas-rodríguez F, Pinzón A, Fuenmayor D, Barbosa T, Vesga Jimenez D, Martin C, E. Barreto G, Aristizabal-pachón A, Gonzalez J. Multi-Omic Epigenetic-Based Model Reveals Key Molecular Mechanisms Associated with Palmitic Acid Lipotoxicity in Human Astrocyte. Neurotoxicity - New Advances 2022. [DOI: 10.5772/intechopen.100133] [Reference Citation Analysis]
11 Creus-muncunill J, Mattei D, Bons J, Ramirez-jimenez AV, Hamilton BW, Corwin C, Chowdhury S, Schilling B, Ellerby L, Ehrlich ME. Deletion of the microglial transmembrane immune signaling adaptor TYROBP ameliorates Huntington’s disease mouse phenotype.. [DOI: 10.1101/2022.02.18.480944] [Reference Citation Analysis]
12 Sproviero D, Gagliardi S, Zucca S, Arigoni M, Giannini M, Garofalo M, Fantini V, Pansarasa O, Avenali M, Ramusino MC, Diamanti L, Minafra B, Perini G, Zangaglia R, Costa A, Ceroni M, Calogero RA, Cereda C. Extracellular Vesicles Derived From Plasma of Patients With Neurodegenerative Disease Have Common Transcriptomic Profiling. Front Aging Neurosci 2022;14:785741. [DOI: 10.3389/fnagi.2022.785741] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
13 Nussinov R, Tsai CJ, Jang H. How can same-gene mutations promote both cancer and developmental disorders? Sci Adv 2022;8:eabm2059. [PMID: 35030014 DOI: 10.1126/sciadv.abm2059] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 6.0] [Reference Citation Analysis]
14 Nussinov R, Tsai C, Jang H. Allostery, and how to define and measure signal transduction. Biophysical Chemistry 2022. [DOI: 10.1016/j.bpc.2022.106766] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 7.0] [Reference Citation Analysis]
15 Mendez M, Harshbarger J, Hoffman MM. Automated identification of cell-type–specific genes and alternative promoters.. [DOI: 10.1101/2021.12.01.470587] [Reference Citation Analysis]
16 Qu W, Zhuang Y, Li X. The roles of epigenetic modifications in neurodegenerative diseases. Zhejiang Da Xue Xue Bao Yi Xue Ban 2021;50:642-50. [PMID: 34986527 DOI: 10.3724/zdxbyxb-2021-0160] [Reference Citation Analysis]
17 Dell'Orco M, Elyaderani A, Vannan A, Sekar S, Powell G, Liang WS, Neisewander JL, Perrone-Bizzozero NI. HuD Regulates mRNA-circRNA-miRNA Networks in the Mouse Striatum Linked to Neuronal Development and Drug Addiction. Biology (Basel) 2021;10:939. [PMID: 34571817 DOI: 10.3390/biology10090939] [Reference Citation Analysis]
18 Ma W, Su K, Wu H. Evaluation of some aspects in supervised cell type identification for single-cell RNA-seq: classifier, feature selection, and reference construction. Genome Biol 2021;22:264. [PMID: 34503564 DOI: 10.1186/s13059-021-02480-2] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 3.0] [Reference Citation Analysis]
19 Manatakis DV, VanDevender A, Manolakos ES. An information-theoretic approach for measuring the distance of organ tissue samples using their transcriptomic signatures. Bioinformatics 2021;36:5194-204. [PMID: 32683449 DOI: 10.1093/bioinformatics/btaa654] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 3.5] [Reference Citation Analysis]
20 Zhu J, Chen F, Luo L, Wu W, Dai J, Zhong J, Lin X, Chai C, Ding P, Liang L, Wang S, Ding X, Chen Y, Wang H, Qiu J, Wang F, Sun C, Zeng Y, Fang J, Jiang X, Liu P, Tang G, Qiu X, Zhang X, Ruan Y, Jiang S, Li J, Zhu S, Xu X, Li F, Liu Z, Cao G, Chen D. Single-cell atlas of domestic pig cerebral cortex and hypothalamus. Sci Bull (Beijing) 2021;66:1448-61. [PMID: 36654371 DOI: 10.1016/j.scib.2021.04.002] [Cited by in Crossref: 13] [Cited by in F6Publishing: 12] [Article Influence: 6.5] [Reference Citation Analysis]
21 Ferreira M, Francisco S, Soares AR, Nobre A, Pinheiro M, Reis A, Neto S, Rodrigues AJ, Sousa N, Moura G, Santos MAS. Integration of segmented regression analysis with weighted gene correlation network analysis identifies genes whose expression is remodeled throughout physiological aging in mouse tissues. Aging (Albany NY) 2021;13:18150-90. [PMID: 34330884 DOI: 10.18632/aging.203379] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
22 Benraiss A, Mariani JN, Osipovitch M, Cornwell A, Windrem MS, Villanueva CB, Chandler-Militello D, Goldman SA. Cell-intrinsic glial pathology is conserved across human and murine models of Huntington's disease. Cell Rep 2021;36:109308. [PMID: 34233199 DOI: 10.1016/j.celrep.2021.109308] [Cited by in Crossref: 6] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
23 Stella R, Bonadio RS, Cagnin S, Massimino ML, Bertoli A, Peggion C. Perturbations of the Proteome and of Secreted Metabolites in Primary Astrocytes from the hSOD1(G93A) ALS Mouse Model. Int J Mol Sci 2021;22:7028. [PMID: 34209958 DOI: 10.3390/ijms22137028] [Cited by in Crossref: 2] [Cited by in F6Publishing: 4] [Article Influence: 1.0] [Reference Citation Analysis]
24 Monk R, Connor B. Cell Reprogramming to Model Huntington's Disease: A Comprehensive Review. Cells 2021;10:1565. [PMID: 34206228 DOI: 10.3390/cells10071565] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
25 Hyeon JW, Kim AH, Yano H. Epigenetic regulation in Huntington's disease. Neurochem Int 2021;148:105074. [PMID: 34038804 DOI: 10.1016/j.neuint.2021.105074] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.5] [Reference Citation Analysis]
26 Creus-Muncunill J, Guisado-Corcoll A, Venturi V, Pantano L, Escaramís G, García de Herreros M, Solaguren-Beascoa M, Gámez-Valero A, Navarrete C, Masana M, Llorens F, Diaz-Lucena D, Pérez-Navarro E, Martí E. Huntington's disease brain-derived small RNAs recapitulate associated neuropathology in mice. Acta Neuropathol 2021;141:565-84. [PMID: 33547932 DOI: 10.1007/s00401-021-02272-9] [Cited by in Crossref: 6] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
27 Elorza A, Márquez Y, Cabrera JR, Sánchez-Trincado JL, Santos-Galindo M, Hernández IH, Picó S, Díaz-Hernández JI, García-Escudero R, Irimia M, Lucas JJ. Huntington's disease-specific mis-splicing unveils key effector genes and altered splicing factors. Brain 2021;144:2009-23. [PMID: 33725094 DOI: 10.1093/brain/awab087] [Cited by in Crossref: 9] [Cited by in F6Publishing: 10] [Article Influence: 4.5] [Reference Citation Analysis]
28 Choi HJ, Jin SD, Rengaraj D, Kim JH, Pain B, Han JY. Differential transcriptional regulation of the NANOG gene in chicken primordial germ cells and embryonic stem cells. J Anim Sci Biotechnol 2021;12:40. [PMID: 33658075 DOI: 10.1186/s40104-021-00563-5] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 1.5] [Reference Citation Analysis]
29 Islam MR, Lbik D, Sakib MS, Maximilian Hofmann R, Berulava T, Jiménez Mausbach M, Cha J, Goldberg M, Vakhtang E, Schiffmann C, Zieseniss A, Katschinski DM, Sananbenesi F, Toischer K, Fischer A. Epigenetic gene expression links heart failure to memory impairment. EMBO Mol Med 2021;13:e11900. [PMID: 33471428 DOI: 10.15252/emmm.201911900] [Cited by in Crossref: 9] [Cited by in F6Publishing: 10] [Article Influence: 4.5] [Reference Citation Analysis]
30 Alcalá-Vida R, Seguin J, Lotz C, Molitor AM, Irastorza-Azcarate I, Awada A, Karasu N, Bombardier A, Cosquer B, Skarmeta JLG, Cassel JC, Boutillier AL, Sexton T, Merienne K. Age-related and disease locus-specific mechanisms contribute to early remodelling of chromatin structure in Huntington's disease mice. Nat Commun 2021;12:364. [PMID: 33441541 DOI: 10.1038/s41467-020-20605-2] [Cited by in Crossref: 5] [Cited by in F6Publishing: 8] [Article Influence: 2.5] [Reference Citation Analysis]
31 Kim HT, Ohn T, Jeong SG, Song A, Jang CH, Cho GW. Oxidative stress-induced aberrant G9a activation disturbs RE-1-containing neuron-specific genes expression, leading to degeneration in human SH-SY5Y neuroblastoma cells. Korean J Physiol Pharmacol 2021;25:51-8. [PMID: 33361537 DOI: 10.4196/kjpp.2021.25.1.51] [Reference Citation Analysis]
32 Alcalá-Vida R, Garcia-Forn M, Castany-Pladevall C, Creus-Muncunill J, Ito Y, Blanco E, Golbano A, Crespí-Vázquez K, Parry A, Slater G, Samarajiwa S, Peiró S, Di Croce L, Narita M, Pérez-Navarro E. Neuron type-specific increase in lamin B1 contributes to nuclear dysfunction in Huntington's disease. EMBO Mol Med 2021;13:e12105. [PMID: 33369245 DOI: 10.15252/emmm.202012105] [Cited by in Crossref: 11] [Cited by in F6Publishing: 13] [Article Influence: 3.7] [Reference Citation Analysis]
33 Gadi I, Fatima S, Elwakiel A, Nazir S, Mohanad Al-Dabet M, Rana R, Bock F, Manoharan J, Gupta D, Biemann R, Nieswandt B, Braun-Dullaeus R, Besler C, Scholz M, Geffers R, Griffin JH, Esmon CT, Kohli S, Isermann B, Shahzad K. Different DOACs Control Inflammation in Cardiac Ischemia-Reperfusion Differently. Circ Res 2021;128:513-29. [PMID: 33353373 DOI: 10.1161/CIRCRESAHA.120.317219] [Cited by in Crossref: 12] [Cited by in F6Publishing: 14] [Article Influence: 4.0] [Reference Citation Analysis]
34 Alcalà-Vida R, Awada A, Boutillier AL, Merienne K. Epigenetic mechanisms underlying enhancer modulation of neuronal identity, neuronal activity and neurodegeneration. Neurobiol Dis 2021;147:105155. [PMID: 33127472 DOI: 10.1016/j.nbd.2020.105155] [Cited by in Crossref: 8] [Cited by in F6Publishing: 5] [Article Influence: 2.7] [Reference Citation Analysis]
35 Mansuri MS, Peng G, Wilson RS, Lam TT, Zhao H, Williams KR, Nairn AC. Differential Protein Expression in Striatal D1- and D2-Dopamine Receptor-Expressing Medium Spiny Neurons. Proteomes 2020;8:27. [PMID: 33066078 DOI: 10.3390/proteomes8040027] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 1.7] [Reference Citation Analysis]
36 Creus-Muncunill J, Ehrlich ME. Cell-Autonomous and Non-cell-Autonomous Pathogenic Mechanisms in Huntington's Disease: Insights from In Vitro and In Vivo Models. Neurotherapeutics 2019;16:957-78. [PMID: 31529216 DOI: 10.1007/s13311-019-00782-9] [Cited by in Crossref: 22] [Cited by in F6Publishing: 18] [Article Influence: 7.3] [Reference Citation Analysis]
37 Schmauch B, Romagnoni A, Pronier E, Saillard C, Maillé P, Calderaro J, Kamoun A, Sefta M, Toldo S, Zaslavskiy M, Clozel T, Moarii M, Courtiol P, Wainrib G. A deep learning model to predict RNA-Seq expression of tumours from whole slide images. Nat Commun 2020;11:3877. [PMID: 32747659 DOI: 10.1038/s41467-020-17678-4] [Cited by in Crossref: 117] [Cited by in F6Publishing: 123] [Article Influence: 39.0] [Reference Citation Analysis]
38 Wilton DK, Stevens B. The contribution of glial cells to Huntington's disease pathogenesis. Neurobiol Dis 2020;143:104963. [PMID: 32593752 DOI: 10.1016/j.nbd.2020.104963] [Cited by in Crossref: 27] [Cited by in F6Publishing: 29] [Article Influence: 9.0] [Reference Citation Analysis]
39 Miyazaki H, Yamanaka T, Oyama F, Kino Y, Kurosawa M, Yamada-Kurosawa M, Yamano R, Shimogori T, Hattori N, Nukina N. FACS-array-based cell purification yields a specific transcriptome of striatal medium spiny neurons in a murine Huntington disease model. J Biol Chem 2020;295:9768-85. [PMID: 32499373 DOI: 10.1074/jbc.RA120.012983] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 1.7] [Reference Citation Analysis]
40 Emami-Khoyi A, Parbhu SP, Ross JG, Murphy EC, Bothwell J, Monsanto DM, Vuuren BJV, Teske PR, Paterson AM. De Novo Transcriptome Assembly and Annotation of Liver and Brain Tissues of Common Brushtail Possums (Trichosurus vulpecula) in New Zealand: Transcriptome Diversity after Decades of Population Control. Genes (Basel) 2020;11:E436. [PMID: 32316496 DOI: 10.3390/genes11040436] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 2.0] [Reference Citation Analysis]
41 Alcalá-vida R, Garcia-forn M, Creus-muncunill J, Ito Y, Blanco E, Castany-pladevall C, Crespí-vázquez K, Parry A, Slater G, Samarajiwa S, Peiró S, Di Croce L, Narita M, Pérez-navarro E. Neuron-specific increase in lamin B1 disrupts nuclear function in Huntington’s disease.. [DOI: 10.1101/2020.03.06.979674] [Reference Citation Analysis]
42 Harris SE, Cox SR, Bell S, Marioni RE, Prins BP, Pattie A, Corley J, Muñoz Maniega S, Valdés Hernández M, Morris Z, John S, Bronson PG, Tucker-Drob EM, Starr JM, Bastin ME, Wardlaw JM, Butterworth AS, Deary IJ. Neurology-related protein biomarkers are associated with cognitive ability and brain volume in older age. Nat Commun 2020;11:800. [PMID: 32041957 DOI: 10.1038/s41467-019-14161-7] [Cited by in Crossref: 15] [Cited by in F6Publishing: 15] [Article Influence: 5.0] [Reference Citation Analysis]
43 Duarte Azevedo M, Sander S, Tenenbaum L. GDNF, A Neuron-Derived Factor Upregulated in Glial Cells during Disease. J Clin Med 2020;9:E456. [PMID: 32046031 DOI: 10.3390/jcm9020456] [Cited by in Crossref: 30] [Cited by in F6Publishing: 31] [Article Influence: 10.0] [Reference Citation Analysis]
44 Manatakis DV, Vandevender A, Manolakos ES. An information-theoretic approach for measuring the distance of organ tissue samples using their transcriptomic signatures.. [DOI: 10.1101/2020.01.23.917245] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
45 Islam R, Lbik D, Sakib S, Hofmann RM, Berulava T, Mausbach MJ, Cha J, Vakhtang E, Schiffmann C, Zieseniss A, Katschinski DM, Sananbenesi F, Toischer K, Fischer A. Epigenetic gene-expression links heart failure to memory impairment.. [DOI: 10.1101/2020.01.22.915637] [Reference Citation Analysis]
46 Hirbec H, Déglon N, Foo LC, Goshen I, Grutzendler J, Hangen E, Kreisel T, Linck N, Muffat J, Regio S, Rion S, Escartin C. Emerging technologies to study glial cells. Glia 2020;68:1692-728. [PMID: 31958188 DOI: 10.1002/glia.23780] [Cited by in Crossref: 20] [Cited by in F6Publishing: 22] [Article Influence: 6.7] [Reference Citation Analysis]
47 Harris SE, Cox SR, Bell S, Marioni RE, Prins BP, Pattie A, Corley J, Muñoz Maniega S, Valdés Hernández M, Morris Z, John S, Bronson PG, Tucker-drob EM, Starr JM, Bastin ME, Wardlaw JM, Butterworth AS, Deary IJ. Neurology-related protein biomarkers are associated with general fluid cognitive ability and brain volume in older age.. [DOI: 10.1101/692459] [Reference Citation Analysis]
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