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For: Smillie CS, Biton M, Ordovas-Montanes J, Sullivan KM, Burgin G, Graham DB, Herbst RH, Rogel N, Slyper M, Waldman J, Sud M, Andrews E, Velonias G, Haber AL, Jagadeesh K, Vickovic S, Yao J, Stevens C, Dionne D, Nguyen LT, Villani AC, Hofree M, Creasey EA, Huang H, Rozenblatt-Rosen O, Garber JJ, Khalili H, Desch AN, Daly MJ, Ananthakrishnan AN, Shalek AK, Xavier RJ, Regev A. Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis. Cell 2019;178:714-730.e22. [PMID: 31348891 DOI: 10.1016/j.cell.2019.06.029] [Cited by in Crossref: 268] [Cited by in F6Publishing: 215] [Article Influence: 134.0] [Reference Citation Analysis]
Number Citing Articles
1 [DOI: 10.1101/2020.08.06.240424] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
2 Ando Y, Kwon AT, Shin JW. An era of single-cell genomics consortia. Exp Mol Med 2020;52:1409-18. [PMID: 32929222 DOI: 10.1038/s12276-020-0409-x] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
3 Bergenheim F, Fregni G, Buchanan CF, Riis LB, Heulot M, Touati J, Seidelin JB, Rizzi SC, Nielsen OH. A fully defined 3D matrix for ex vivo expansion of human colonic organoids from biopsy tissue. Biomaterials 2020;262:120248. [PMID: 32891909 DOI: 10.1016/j.biomaterials.2020.120248] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 2.5] [Reference Citation Analysis]
4 Corridoni D, Antanaviciute A, Gupta T, Fawkner-Corbett D, Aulicino A, Jagielowicz M, Parikh K, Repapi E, Taylor S, Ishikawa D, Hatano R, Yamada T, Xin W, Slawinski H, Bowden R, Napolitani G, Brain O, Morimoto C, Koohy H, Simmons A. Single-cell atlas of colonic CD8+ T cells in ulcerative colitis. Nat Med 2020;26:1480-90. [PMID: 32747828 DOI: 10.1038/s41591-020-1003-4] [Cited by in Crossref: 26] [Cited by in F6Publishing: 21] [Article Influence: 13.0] [Reference Citation Analysis]
5 Bsat M, Chapuy L, Rubio M, Sarfati M. A two-step human culture system replicates intestinal monocyte maturation cascade: Conversion of tissue-like inflammatory monocytes into macrophages. Eur J Immunol 2020;50:1676-90. [PMID: 32557554 DOI: 10.1002/eji.202048555] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.5] [Reference Citation Analysis]
6 Franklin RA. Fibroblasts and macrophages: Collaborators in tissue homeostasis. Immunol Rev 2021;302:86-103. [PMID: 34101202 DOI: 10.1111/imr.12989] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
7 Nathan A, Beynor JI, Baglaenko Y, Suliman S, Ishigaki K, Asgari S, Huang CC, Luo Y, Zhang Z, Lopez K, Lindestam Arlehamn CS, Ernst JD, Jimenez J, Calderón RI, Lecca L, Van Rhijn I, Moody DB, Murray MB, Raychaudhuri S. Multimodally profiling memory T cells from a tuberculosis cohort identifies cell state associations with demographics, environment and disease. Nat Immunol 2021;22:781-93. [PMID: 34031617 DOI: 10.1038/s41590-021-00933-1] [Cited by in Crossref: 4] [Cited by in F6Publishing: 1] [Article Influence: 4.0] [Reference Citation Analysis]
8 Overacre-Delgoffe AE, Hand TW. Regulation of tissue-resident memory T cells by the Microbiota. Mucosal Immunol 2022. [PMID: 35194180 DOI: 10.1038/s41385-022-00491-1] [Reference Citation Analysis]
9 Hidalgo-Garcia L, Molina-Tijeras JA, Huertas-Peña F, Ruiz-Malagón AJ, Diez-Echave P, Vezza T, Rodríguez-Sojo MJ, Morón R, Becerra-Massare P, Rodríguez-Nogales A, Gálvez J, Rodríguez-Cabezas ME, Anderson P. Intestinal mesenchymal cells regulate immune responses and promote epithelial regeneration in vitro and in dextran sulfate sodium-induced experimental colitis in mice. Acta Physiol (Oxf) 2021;:e13699. [PMID: 34089568 DOI: 10.1111/apha.13699] [Reference Citation Analysis]
10 [DOI: 10.1101/2021.01.11.426253] [Cited by in Crossref: 6] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
11 Zhu G, Xi R. MRISCs protect colonic stem cells from inflammatory damage. Cell Regen 2021;10:24. [PMID: 34080092 DOI: 10.1186/s13619-021-00086-4] [Reference Citation Analysis]
12 Ryzhakov G, Almuttaqi H, Corbin AL, Berthold DL, Khoyratty T, Eames HL, Bullers S, Pearson C, Ai Z, Zec K, Bonham S, Fischer R, Jostins-Dean L, Travis SPL, Kessler BM, Udalova IA. Defactinib inhibits PYK2 phosphorylation of IRF5 and reduces intestinal inflammation. Nat Commun 2021;12:6702. [PMID: 34795257 DOI: 10.1038/s41467-021-27038-5] [Reference Citation Analysis]
13 Igalouzene R, Hernandez-vargas H, Benech N, Guyennon A, Bauché D, Barrachina C, Dubois E, Marie JC, Soudja SM. SMAD4 TGF-β–independent function preconditions naive CD8+ T cells to prevent severe chronic intestinal inflammation. Journal of Clinical Investigation 2022;132:e151020. [DOI: 10.1172/jci151020] [Reference Citation Analysis]
14 Baars MJD, Sinha N, Amini M, Pieterman-Bos A, van Dam S, Ganpat MMP, Laclé MM, Oldenburg B, Vercoulen Y. MATISSE: a method for improved single cell segmentation in imaging mass cytometry. BMC Biol 2021;19:99. [PMID: 33975602 DOI: 10.1186/s12915-021-01043-y] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
15 Kobayashi N, Takahashi D, Takano S, Kimura S, Hase K. The Roles of Peyer's Patches and Microfold Cells in the Gut Immune System: Relevance to Autoimmune Diseases. Front Immunol 2019;10:2345. [PMID: 31649668 DOI: 10.3389/fimmu.2019.02345] [Cited by in Crossref: 33] [Cited by in F6Publishing: 29] [Article Influence: 11.0] [Reference Citation Analysis]
16 Selin KA, Hedin CRH, Villablanca EJ. Immunological networks defining the heterogeneity of inflammatory bowel diseases. J Crohns Colitis 2021:jjab085. [PMID: 33959743 DOI: 10.1093/ecco-jcc/jjab085] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
17 Hughes TK, Wadsworth MH 2nd, Gierahn TM, Do T, Weiss D, Andrade PR, Ma F, de Andrade Silva BJ, Shao S, Tsoi LC, Ordovas-Montanes J, Gudjonsson JE, Modlin RL, Love JC, Shalek AK. Second-Strand Synthesis-Based Massively Parallel scRNA-Seq Reveals Cellular States and Molecular Features of Human Inflammatory Skin Pathologies. Immunity 2020;53:878-894.e7. [PMID: 33053333 DOI: 10.1016/j.immuni.2020.09.015] [Cited by in Crossref: 36] [Cited by in F6Publishing: 24] [Article Influence: 36.0] [Reference Citation Analysis]
18 Sullivan ZA, Khoury-Hanold W, Lim J, Smillie C, Biton M, Reis BS, Zwick RK, Pope SD, Israni-Winger K, Parsa R, Philip NH, Rashed S, Palm N, Wang A, Mucida D, Regev A, Medzhitov R. γδ T cells regulate the intestinal response to nutrient sensing. Science 2021;371:eaba8310. [PMID: 33737460 DOI: 10.1126/science.aba8310] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 8.0] [Reference Citation Analysis]
19 Domanska D, Majid U, Karlsen VT, Merok MA, Beitnes AR, Yaqub S, Bækkevold ES, Jahnsen FL. Single-cell transcriptomic analysis of human colonic macrophages reveals niche-specific subsets. J Exp Med 2022;219:e20211846. [PMID: 35139155 DOI: 10.1084/jem.20211846] [Reference Citation Analysis]
20 Wang W, Zhong Y, Zhuang Z, Xie J, Lu Y, Huang C, Sun Y, Wu L, Yin J, Yu H, Jiang Z, Wang S, Wang C, Zhang Y, Huang Y, Han C, Zhong Z, Hu J, Ouyang Y, Liu H, Yu M, Wei X, Chen D, Huang L, Hou Y, Lin Z, Liu S, Ling F, Yao X. Multiregion single-cell sequencing reveals the transcriptional landscape of the immune microenvironment of colorectal cancer. Clin Transl Med 2021;11:e253. [PMID: 33463049 DOI: 10.1002/ctm2.253] [Cited by in Crossref: 1] [Cited by in F6Publishing: 4] [Article Influence: 1.0] [Reference Citation Analysis]
21 Fan J, Slowikowski K, Zhang F. Single-cell transcriptomics in cancer: computational challenges and opportunities. Exp Mol Med 2020;52:1452-65. [PMID: 32929226 DOI: 10.1038/s12276-020-0422-0] [Cited by in Crossref: 27] [Cited by in F6Publishing: 17] [Article Influence: 13.5] [Reference Citation Analysis]
22 Fawkner-Corbett D, Antanaviciute A, Parikh K, Jagielowicz M, Gerós AS, Gupta T, Ashley N, Khamis D, Fowler D, Morrissey E, Cunningham C, Johnson PRV, Koohy H, Simmons A. Spatiotemporal analysis of human intestinal development at single-cell resolution. Cell 2021;184:810-826.e23. [PMID: 33406409 DOI: 10.1016/j.cell.2020.12.016] [Cited by in Crossref: 22] [Cited by in F6Publishing: 18] [Article Influence: 22.0] [Reference Citation Analysis]
23 Li QX, Guo YX, Hua RX, Shang HW, Li LS, Xu JD. New insight into function and dysfunction of gut microfold cells. Shijie Huaren Xiaohua Zazhi 2021; 29(4): 197-203 [DOI: 10.11569/wcjd.v29.i4.197] [Reference Citation Analysis]
24 Treveil A, Sudhakar P, Matthews ZJ, Wrzesiński T, Jones EJ, Brooks J, Ölbei M, Hautefort I, Hall LJ, Carding SR, Mayer U, Powell PP, Wileman T, Di Palma F, Haerty W, Korcsmáros T. Regulatory network analysis of Paneth cell and goblet cell enriched gut organoids using transcriptomics approaches. Mol Omics 2020;16:39-58. [PMID: 31819932 DOI: 10.1039/c9mo00130a] [Cited by in Crossref: 9] [Cited by in F6Publishing: 6] [Article Influence: 9.0] [Reference Citation Analysis]
25 Mädler SC, Julien-Laferriere A, Wyss L, Phan M, Sonrel A, Kang ASW, Ulrich E, Schmucki R, Zhang JD, Ebeling M, Badi L, Kam-Thong T, Schwalie PC, Hatje K. Besca, a single-cell transcriptomics analysis toolkit to accelerate translational research. NAR Genom Bioinform 2021;3:lqab102. [PMID: 34761219 DOI: 10.1093/nargab/lqab102] [Reference Citation Analysis]
26 Širvinskas D, Omrani O, Lu J, Rasa M, Krepelova A, Adam L, Kaeppel S, Sommer F, Neri F. Single-cell atlas of the aging mouse colon. iScience 2022;25:104202. [DOI: 10.1016/j.isci.2022.104202] [Reference Citation Analysis]
27 Biancalani T, Scalia G, Buffoni L, Avasthi R, Lu Z, Sanger A, Tokcan N, Vanderburg CR, Segerstolpe Å, Zhang M, Avraham-Davidi I, Vickovic S, Nitzan M, Ma S, Subramanian A, Lipinski M, Buenrostro J, Brown NB, Fanelli D, Zhuang X, Macosko EZ, Regev A. Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram. Nat Methods 2021;18:1352-62. [PMID: 34711971 DOI: 10.1038/s41592-021-01264-7] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
28 Nayar S, Cho JH. From single-target to cellular niche targeting in Crohn's disease: intercepting bad communications. EBioMedicine 2021;74:103690. [PMID: 34773892 DOI: 10.1016/j.ebiom.2021.103690] [Reference Citation Analysis]
29 [DOI: 10.1101/2020.04.24.059667] [Cited by in Crossref: 17] [Cited by in F6Publishing: 5] [Reference Citation Analysis]
30 Jaeger N, Gamini R, Cella M, Schettini JL, Bugatti M, Zhao S, Rosadini CV, Esaulova E, Di Luccia B, Kinnett B, Vermi W, Artyomov MN, Wynn TA, Xavier RJ, Jelinsky SA, Colonna M. Single-cell analyses of Crohn's disease tissues reveal intestinal intraepithelial T cells heterogeneity and altered subset distributions. Nat Commun 2021;12:1921. [PMID: 33771991 DOI: 10.1038/s41467-021-22164-6] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
31 Harris BD, Crow M, Fischer S, Gillis J. Single-cell co-expression analysis reveals that transcriptional modules are shared across cell types in the brain. Cell Syst 2021;12:748-756.e3. [PMID: 34015329 DOI: 10.1016/j.cels.2021.04.010] [Reference Citation Analysis]
32 Asam S, Nayar S, Gardner D, Barone F. Stromal cells in tertiary lymphoid structures: Architects of autoimmunity. Immunol Rev 2021;302:184-95. [PMID: 34060101 DOI: 10.1111/imr.12987] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
33 Zhang F, Mears JR, Shakib L, Beynor JI, Shanaj S, Korsunsky I, Nathan A, Donlin LT, Raychaudhuri S; Accelerating Medicines Partnership Rheumatoid Arthritis and Systemic Lupus Erythematosus (AMP RA/SLE) Consortium . IFN- γ and TNF- α drive a CXCL10 + CCL2 + macrophage phenotype expanded in severe COVID-19 and other diseases with tissue inflammation. bioRxiv 2020:2020. [PMID: 32793902 DOI: 10.1101/2020.08.05.238360] [Cited by in Crossref: 10] [Cited by in F6Publishing: 3] [Article Influence: 5.0] [Reference Citation Analysis]
34 Bamias G, Cominelli F. Exploring the Early Phase of Crohn's Disease. Clin Gastroenterol Hepatol 2020:S1542-3565(20)31283-0. [PMID: 32949730 DOI: 10.1016/j.cgh.2020.09.023] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
35 Heuberger C, Pott J, Maloy KJ. Why do intestinal epithelial cells express MHC class II? Immunology 2021;162:357-67. [PMID: 32966619 DOI: 10.1111/imm.13270] [Cited by in Crossref: 1] [Cited by in F6Publishing: 3] [Article Influence: 0.5] [Reference Citation Analysis]
36 [DOI: 10.1101/2020.05.21.109124] [Cited by in Crossref: 9] [Cited by in F6Publishing: 3] [Reference Citation Analysis]
37 Ghazizadeh Z, Majd H, Richter M, Samuel R, Zekavat SM, Asgharian H, Farahvashi S, Kalantari A, Ramirez J, Zhao H, Natarajan P, Goodarzi H, Fattahi F. Androgen Regulates SARS-CoV-2 Receptor Levels and Is Associated with Severe COVID-19 Symptoms in Men. bioRxiv 2020:2020. [PMID: 32511360 DOI: 10.1101/2020.05.12.091082] [Cited by in Crossref: 19] [Article Influence: 9.5] [Reference Citation Analysis]
38 Habib N, McCabe C, Medina S, Varshavsky M, Kitsberg D, Dvir-Szternfeld R, Green G, Dionne D, Nguyen L, Marshall JL, Chen F, Zhang F, Kaplan T, Regev A, Schwartz M. Disease-associated astrocytes in Alzheimer's disease and aging. Nat Neurosci 2020;23:701-6. [PMID: 32341542 DOI: 10.1038/s41593-020-0624-8] [Cited by in Crossref: 124] [Cited by in F6Publishing: 108] [Article Influence: 62.0] [Reference Citation Analysis]
39 Lim WW, Ng B, Widjaja A, Xie C, Su L, Ko N, Lim SY, Kwek XY, Lim S, Cook SA, Schafer S. Transgenic interleukin 11 expression causes cross-tissue fibro-inflammation and an inflammatory bowel phenotype in mice. PLoS One 2020;15:e0227505. [PMID: 31917819 DOI: 10.1371/journal.pone.0227505] [Cited by in Crossref: 13] [Cited by in F6Publishing: 13] [Article Influence: 6.5] [Reference Citation Analysis]
40 Tan M, Ye J, Zhou Z, Ke X, Yu X, Huang K. Fatty Acid Metabolism in Immune Cells: A Bioinformatics Analysis of Genes Involved in Ulcerative Colitis. DNA Cell Biol 2020;39:1573-82. [PMID: 32678986 DOI: 10.1089/dna.2020.5582] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
41 Giraldez MD, Carneros D, Garbers C, Rose-John S, Bustos M. New insights into IL-6 family cytokines in metabolism, hepatology and gastroenterology. Nat Rev Gastroenterol Hepatol 2021. [PMID: 34211157 DOI: 10.1038/s41575-021-00473-x] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
42 [DOI: 10.1101/2021.03.12.435024] [Cited by in Crossref: 5] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
43 Zhang L, Cheng J, Shen J, Wang S, Guo C, Fan X. Ghrelin Inhibits Intestinal Epithelial Cell Apoptosis Through the Unfolded Protein Response Pathway in Ulcerative Colitis. Front Pharmacol 2021;12:661853. [PMID: 33776781 DOI: 10.3389/fphar.2021.661853] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
44 Leon G, Hernandez Santana YE, Irwin N, Giannoudaki E, O'Neill S, Csizmadia I, Gogarty M, Lee TJ, Ruane D, Long A, Fallon PG, Hussey S, Walsh PT. IL-36 cytokines imprint a colitogenic phenotype on CD4+ T helper cells. Mucosal Immunol 2022. [PMID: 35177818 DOI: 10.1038/s41385-022-00488-w] [Reference Citation Analysis]
45 Poletti M, Treveil A, Csabai L, Gul L, Modos D, Madgwick M, Olbei M, Bohar B, Valdeolivas A, Turei D, Verstockt B, Triana S, Alexandrov T, Saez-rodriguez J, Stanifer ML, Boulant S, Korcsmaros T. Mapping the epithelial–immune cell interactome upon infection in the gut and the upper airways. npj Syst Biol Appl 2022;8. [DOI: 10.1038/s41540-022-00224-x] [Reference Citation Analysis]
46 [DOI: 10.1101/853457] [Cited by in Crossref: 9] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
47 Samuel RM, Majd H, Richter MN, Ghazizadeh Z, Zekavat SM, Navickas A, Ramirez JT, Asgharian H, Simoneau CR, Bonser LR, Koh KD, Garcia-Knight M, Tassetto M, Sunshine S, Farahvashi S, Kalantari A, Liu W, Andino R, Zhao H, Natarajan P, Erle DJ, Ott M, Goodarzi H, Fattahi F. Androgen Signaling Regulates SARS-CoV-2 Receptor Levels and Is Associated with Severe COVID-19 Symptoms in Men. Cell Stem Cell 2020;27:876-889.e12. [PMID: 33232663 DOI: 10.1016/j.stem.2020.11.009] [Cited by in Crossref: 38] [Cited by in F6Publishing: 48] [Article Influence: 19.0] [Reference Citation Analysis]
48 Hsu CC, Okumura R, Motooka D, Sasaki R, Nakamura S, Iida T, Takeda K. Alleviation of colonic inflammation by Lypd8 in a mouse model of inflammatory bowel disease. Int Immunol 2021;33:359-72. [PMID: 33822948 DOI: 10.1093/intimm/dxab012] [Reference Citation Analysis]
49 Gul L, Modos D, Fonseca S, Madgwick M, Thomas JP, Sudhakar P, Booth C, Stentz R, Carding SR, Korcsmaros T. Extracellular vesicles produced by the human commensal gut bacterium Bacteroides thetaiotaomicron affect host immune pathways in a cell‐type specific manner that are altered in inflammatory bowel disease. J of Extracellular Vesicle 2022;11. [DOI: 10.1002/jev2.12189] [Reference Citation Analysis]
50 Wang X, He Y, Zhang Q, Ren X, Zhang Z. Direct Comparative Analyses of 10X Genomics Chromium and Smart-seq2. Genomics Proteomics Bioinformatics 2021:S1672-0229(21)00048-6. [PMID: 33662621 DOI: 10.1016/j.gpb.2020.02.005] [Cited by in Crossref: 6] [Cited by in F6Publishing: 3] [Article Influence: 6.0] [Reference Citation Analysis]
51 Stanifer ML, Kee C, Cortese M, Zumaran CM, Triana S, Mukenhirn M, Kraeusslich HG, Alexandrov T, Bartenschlager R, Boulant S. Critical Role of Type III Interferon in Controlling SARS-CoV-2 Infection in Human Intestinal Epithelial Cells. Cell Rep 2020;32:107863. [PMID: 32610043 DOI: 10.1016/j.celrep.2020.107863] [Cited by in Crossref: 118] [Cited by in F6Publishing: 113] [Article Influence: 59.0] [Reference Citation Analysis]
52 Caër C, Wick MJ. Human Intestinal Mononuclear Phagocytes in Health and Inflammatory Bowel Disease. Front Immunol 2020;11:410. [PMID: 32256490 DOI: 10.3389/fimmu.2020.00410] [Cited by in Crossref: 20] [Cited by in F6Publishing: 19] [Article Influence: 10.0] [Reference Citation Analysis]
53 Zhang L, Li Z, Skrzypczynska KM, Fang Q, Zhang W, O'Brien SA, He Y, Wang L, Zhang Q, Kim A, Gao R, Orf J, Wang T, Sawant D, Kang J, Bhatt D, Lu D, Li CM, Rapaport AS, Perez K, Ye Y, Wang S, Hu X, Ren X, Ouyang W, Shen Z, Egen JG, Zhang Z, Yu X. Single-Cell Analyses Inform Mechanisms of Myeloid-Targeted Therapies in Colon Cancer. Cell 2020;181:442-459.e29. [PMID: 32302573 DOI: 10.1016/j.cell.2020.03.048] [Cited by in Crossref: 122] [Cited by in F6Publishing: 110] [Article Influence: 61.0] [Reference Citation Analysis]
54 Parigi SM, Larsson L, Das S, Ramirez Flores RO, Frede A, Tripathi KP, Diaz OE, Selin K, Morales RA, Luo X, Monasterio G, Engblom C, Gagliani N, Saez-Rodriguez J, Lundeberg J, Villablanca EJ. The spatial transcriptomic landscape of the healing mouse intestine following damage. Nat Commun 2022;13:828. [PMID: 35149721 DOI: 10.1038/s41467-022-28497-0] [Reference Citation Analysis]
55 Ho GT, Cartwright JA, Thompson EJ, Bain CC, Rossi AG. Resolution of Inflammation and Gut Repair in IBD: Translational Steps Towards Complete Mucosal Healing. Inflamm Bowel Dis 2020;26:1131-43. [PMID: 32232386 DOI: 10.1093/ibd/izaa045] [Cited by in Crossref: 16] [Cited by in F6Publishing: 17] [Article Influence: 16.0] [Reference Citation Analysis]
56 Palla G, Fischer DS, Regev A, Theis FJ. Spatial components of molecular tissue biology. Nat Biotechnol. [DOI: 10.1038/s41587-021-01182-1] [Reference Citation Analysis]
57 Sphyris N, Hodder MC, Sansom OJ. Subversion of Niche-Signalling Pathways in Colorectal Cancer: What Makes and Breaks the Intestinal Stem Cell. Cancers (Basel) 2021;13:1000. [PMID: 33673710 DOI: 10.3390/cancers13051000] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
58 Türei D, Valdeolivas A, Gul L, Palacio-Escat N, Klein M, Ivanova O, Ölbei M, Gábor A, Theis F, Módos D, Korcsmáros T, Saez-Rodriguez J. Integrated intra- and intercellular signaling knowledge for multicellular omics analysis. Mol Syst Biol 2021;17:e9923. [PMID: 33749993 DOI: 10.15252/msb.20209923] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 7.0] [Reference Citation Analysis]
59 Chen YP, Yin JH, Li WF, Li HJ, Chen DP, Zhang CJ, Lv JW, Wang YQ, Li XM, Li JY, Zhang PP, Li YQ, He QM, Yang XJ, Lei Y, Tang LL, Zhou GQ, Mao YP, Wei C, Xiong KX, Zhang HB, Zhu SD, Hou Y, Sun Y, Dean M, Amit I, Wu K, Kuang DM, Li GB, Liu N, Ma J. Single-cell transcriptomics reveals regulators underlying immune cell diversity and immune subtypes associated with prognosis in nasopharyngeal carcinoma. Cell Res 2020;30:1024-42. [PMID: 32686767 DOI: 10.1038/s41422-020-0374-x] [Cited by in Crossref: 33] [Cited by in F6Publishing: 33] [Article Influence: 16.5] [Reference Citation Analysis]
60 Zhang F, Mears JR, Shakib L, Beynor JI, Shanaj S, Korsunsky I, Nathan A, Donlin LT, Raychaudhuri S; Accelerating Medicines Partnership Rheumatoid Arthritis and Systemic Lupus Erythematosus (AMP RA/SLE) Consortium. IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 lungs and inflammatory diseases with tissue inflammation. Genome Med 2021;13:64. [PMID: 33879239 DOI: 10.1186/s13073-021-00881-3] [Cited by in Crossref: 16] [Cited by in F6Publishing: 20] [Article Influence: 16.0] [Reference Citation Analysis]
61 Reekie IR, Sharma S, Foers A, Sherlock J, Coles MC, Dick AD, Denniston AK, Buckley CD. The Cellular Composition of the Uveal Immune Environment. Front Med (Lausanne) 2021;8:721953. [PMID: 34778287 DOI: 10.3389/fmed.2021.721953] [Reference Citation Analysis]
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