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For: Visel A, Taher L, Girgis H, May D, Golonzhka O, Hoch RV, McKinsey GL, Pattabiraman K, Silberberg SN, Blow MJ, Hansen DV, Nord AS, Akiyama JA, Holt A, Hosseini R, Phouanenavong S, Plajzer-Frick I, Shoukry M, Afzal V, Kaplan T, Kriegstein AR, Rubin EM, Ovcharenko I, Pennacchio LA, Rubenstein JL. A high-resolution enhancer atlas of the developing telencephalon. Cell 2013;152:895-908. [PMID: 23375746 DOI: 10.1016/j.cell.2012.12.041] [Cited by in Crossref: 184] [Cited by in F6Publishing: 157] [Article Influence: 20.4] [Reference Citation Analysis]
Number Citing Articles
1 Wang J, Wang A, Tian K, Hua X, Zhang B, Zheng Y, Kong X, Li W, Xu L, Wang J, Li Z, Liu Y, Zhou Y. A Ctnnb1 enhancer regulates neocortical neurogenesis by controlling the abundance of intermediate progenitors. Cell Discov 2022;8:74. [PMID: 35915089 DOI: 10.1038/s41421-022-00421-2] [Reference Citation Analysis]
2 Bae T, Fasching L, Wang Y, Shin JH, Suvakov M, Jang Y, Norton S, Dias C, Mariani J, Jourdon A, Wu F, Panda A, Pattni R, Chahine Y, Yeh R, Roberts RC, Huttner A, Kleinman JE, Hyde TM, Straub RE, Walsh CA, Urban AE, Leckman JF, Weinberger DR, Vaccarino FM, Abyzov A, Walsh CA, Park PJ, Sestan N, Weinberger D, Moran JV, Gage FH, Vaccarino FM, Gleeson J, Mathern G, Courchesne E, Roy S, Chess AJ, Akbarian S, Bizzotto S, Coulter M, Dias C, D'Gama A, Ganz J, Hill R, Huang AY, Khoshkhoo S, Kim S, Lee A, Lodato M, Maury EA, Miller M, Borges-Monroy R, Rodin R, Zhou Z, Bohrson C, Chu C, Cortes-Ciriano I, Dou Y, Galor A, Gulhan D, Kwon M, Luquette J, Sherman M, Viswanadham V, Jones A, Rosenbluh C, Cho S, Langmead B, Thorpe J, Erwin J, Jaffe A, McConnell M, Narurkar R, Paquola A, Shin J, Straub R, Abyzov A, Bae T, Jang Y, Wang Y, Molitor C, Peters M, Linker S, Reed P, Wang M, Urban A, Zhou B, Zhu X, Pattni R, Serres Amero A, Juan D, Lobon I, Marques-Bonet T, Solis Moruno M, Garcia Perez R, Povolotskaya I, Soriano E, Antaki D, Averbuj D, Ball L, Breuss M, Yang X, Chung C, Emery SB, Flasch DA, Kidd JM, Kopera HC, Kwan KY, Mills RE, Moldovan JB, Sun C, Zhao X, Zhou W, Frisbie TJ, Cherskov A, Fasching L, Jourdon A, Pochareddy S, Scuderi S; Brain Somatic Mosaicism Network§. Analysis of somatic mutations in 131 human brains reveals aging-associated hypermutability. Science 2022;377:511-7. [PMID: 35901164 DOI: 10.1126/science.abm6222] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
3 Su-Feher L, Rubin AN, Silberberg SN, Catta-Preta R, Lim KJ, Ypsilanti AR, Zdilar I, McGinnis CS, McKinsey GL, Rubino TE Jr, Hawrylycz MJ, Thompson C, Gartner ZJ, Puelles L, Zeng H, Rubenstein JLR, Nord AS. Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia. Proc Natl Acad Sci U S A 2022;119:e2108760119. [PMID: 35377797 DOI: 10.1073/pnas.2108760119] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
4 Poeta L, Malacarne M, Padula A, Drongitis D, Verrillo L, Lioi MB, Chiariello AM, Bianco S, Nicodemi M, Piccione M, Salzano E, Coviello D, Miano MG. Further Delineation of Duplications of ARX Locus Detected in Male Patients with Varying Degrees of Intellectual Disability. IJMS 2022;23:3084. [DOI: 10.3390/ijms23063084] [Reference Citation Analysis]
5 Su Z, Wang Z, Lindtner S, Yang L, Shang Z, Tian Y, Guo R, You Y, Zhou W, Rubenstein JL, Yang Z, Zhang Z. Dlx1/2-dependent expression of Meis2 promotes neuronal fate determination in the mammalian striatum. Development 2022;149:dev200035. [PMID: 35156680 DOI: 10.1242/dev.200035] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
6 Noack F, Vangelisti S, Raffl G, Carido M, Diwakar J, Chong F, Bonev B. Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler. Nat Neurosci 2022;25:154-67. [PMID: 35132236 DOI: 10.1038/s41593-021-01002-4] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 3.0] [Reference Citation Analysis]
7 Nano PR, Nguyen CV, Mil J, Bhaduri A. Cortical Cartography: Mapping Arealization Using Single-Cell Omics Technology. Front Neural Circuits 2021;15:788560. [PMID: 34955761 DOI: 10.3389/fncir.2021.788560] [Reference Citation Analysis]
8 Viegas J. Profile of John L. R. Rubenstein. Proc Natl Acad Sci U S A 2021;118:e2120493118. [PMID: 34934007 DOI: 10.1073/pnas.2120493118] [Reference Citation Analysis]
9 Ypsilanti AR, Pattabiraman K, Catta-Preta R, Golonzhka O, Lindtner S, Tang K, Jones IR, Abnousi A, Juric I, Hu M, Shen Y, Dickel DE, Visel A, Pennachio LA, Hawrylycz M, Thompson CL, Zeng H, Barozzi I, Nord AS, Rubenstein JL. Transcriptional network orchestrating regional patterning of cortical progenitors. Proc Natl Acad Sci U S A 2021;118:e2024795118. [PMID: 34921112 DOI: 10.1073/pnas.2024795118] [Cited by in Crossref: 1] [Cited by in F6Publishing: 5] [Article Influence: 1.0] [Reference Citation Analysis]
10 Skoric-Milosavljevic D, Tadros R, Bosada FM, Tessadori F, van Weerd JH, Woudstra OI, Tjong FVY, Lahrouchi N, Bajolle F, Cordell HJ, Agopian AJ, Blue GM, Barge-Schaapveld DQ, Gewillig MH, Preuss C, Lodder EM, Barnett P, Ilgun A, Beekman L, van Duijvenboden K, Bokenkamp R, Müller-Nurasyid M, Vliegen HW, Konings TC, van Melle JP, van Dijk A, van Kimmenade RR, Roos-Hesselink JW, Sieswerda G, Meijboom F, Abdul-Khaliq H, Berger F, Dittrich S, Hitz MP, Moosmann J, Riede FT, Schubert S, Galan P, Lathrop GM, Munter HM, Al-Chalabi A, Shaw CE, Shaw PJ, Morrison KE, Veldink JH, van den Berg LH, Evans SM, Nobrega MA, Aneas I, Radivojkov-Blagojevic M, Meitinger T, Oechslin E, Mondal T, Bergin ML, Smythe JF, Altamirano-Diaz L, Lougheed J, Bouma BJ, Chaix MA, Kline J, Bassett AS, Andelfinger G, van der Palen RL, Bouvagnet P, Clur SB, Breckpot J, Kerstjens-Frederikse WS, Winlaw DS, Bauer U, Mital S, Goldmuntz E, Keavney BD, Bonnet D, Mulder BJ, Tanck M, Bakkers J, Christoffels VM, Boogerd CJ, Postma AV, Bezzina CR. Common Genetic Variants Contribute to Risk of Transposition of the Great Arteries. Circ Res 2021. [PMID: 34886679 DOI: 10.1161/CIRCRESAHA.120.317107] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 4.0] [Reference Citation Analysis]
11 Snetkova V, Pennacchio LA, Visel A, Dickel DE. Perfect and imperfect views of ultraconserved sequences. Nat Rev Genet 2021. [PMID: 34764456 DOI: 10.1038/s41576-021-00424-x] [Cited by in F6Publishing: 3] [Reference Citation Analysis]
12 Closser M, Guo Y, Wang P, Patel T, Jang S, Hammelman J, De Nooij JC, Kopunova R, Mazzoni EO, Ruan Y, Gifford DK, Wichterle H. An expansion of the non-coding genome and its regulatory potential underlies vertebrate neuronal diversity. Neuron 2021:S0896-6273(21)00782-0. [PMID: 34727520 DOI: 10.1016/j.neuron.2021.10.014] [Cited by in Crossref: 8] [Cited by in F6Publishing: 5] [Article Influence: 8.0] [Reference Citation Analysis]
13 Ziffra RS, Kim CN, Ross JM, Wilfert A, Turner TN, Haeussler M, Casella AM, Przytycki PF, Keough KC, Shin D, Bogdanoff D, Kreimer A, Pollard KS, Ament SA, Eichler EE, Ahituv N, Nowakowski TJ. Single-cell epigenomics reveals mechanisms of human cortical development. Nature 2021;598:205-13. [PMID: 34616060 DOI: 10.1038/s41586-021-03209-8] [Cited by in Crossref: 2] [Cited by in F6Publishing: 20] [Article Influence: 2.0] [Reference Citation Analysis]
14 Lambert JT, Su-Feher L, Cichewicz K, Warren TL, Zdilar I, Wang Y, Lim KJ, Haigh JL, Morse SJ, Canales CP, Stradleigh TW, Castillo Palacios E, Haghani V, Moss SD, Parolini H, Quintero D, Shrestha D, Vogt D, Byrne LC, Nord AS. Parallel functional testing identifies enhancers active in early postnatal mouse brain. Elife 2021;10:e69479. [PMID: 34605404 DOI: 10.7554/eLife.69479] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
15 Vasistha NA, Khodosevich K. The impact of (ab)normal maternal environment on cortical development. Prog Neurobiol 2021;202:102054. [PMID: 33905709 DOI: 10.1016/j.pneurobio.2021.102054] [Cited by in F6Publishing: 3] [Reference Citation Analysis]
16 Byeon GW, Cenik ES, Jiang L, Tang H, Das R, Barna M. Functional and structural basis of extreme conservation in vertebrate 5' untranslated regions. Nat Genet 2021;53:729-41. [PMID: 33821006 DOI: 10.1038/s41588-021-00830-1] [Cited by in Crossref: 1] [Cited by in F6Publishing: 6] [Article Influence: 1.0] [Reference Citation Analysis]
17 Singh G, Mullany S, Moorthy SD, Zhang R, Mehdi T, Tian R, Duncan AG, Moses AM, Mitchell JA. A flexible repertoire of transcription factor binding sites and a diversity threshold determines enhancer activity in embryonic stem cells. Genome Res 2021;31:564-75. [PMID: 33712417 DOI: 10.1101/gr.272468.120] [Cited by in Crossref: 4] [Cited by in F6Publishing: 7] [Article Influence: 4.0] [Reference Citation Analysis]
18 Yuan X, Scott IC, Wilson MD. Heart Enhancers: Development and Disease Control at a Distance. Front Genet 2021;12:642975. [PMID: 33777110 DOI: 10.3389/fgene.2021.642975] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
19 Mich JK, Graybuck LT, Hess EE, Mahoney JT, Kojima Y, Ding Y, Somasundaram S, Miller JA, Kalmbach BE, Radaelli C, Gore BB, Weed N, Omstead V, Bishaw Y, Shapovalova NV, Martinez RA, Fong O, Yao S, Mortrud M, Chong P, Loftus L, Bertagnolli D, Goldy J, Casper T, Dee N, Opitz-Araya X, Cetin A, Smith KA, Gwinn RP, Cobbs C, Ko AL, Ojemann JG, Keene CD, Silbergeld DL, Sunkin SM, Gradinaru V, Horwitz GD, Zeng H, Tasic B, Lein ES, Ting JT, Levi BP. Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex. Cell Rep 2021;34:108754. [PMID: 33789096 DOI: 10.1016/j.celrep.2021.108754] [Cited by in Crossref: 6] [Cited by in F6Publishing: 24] [Article Influence: 6.0] [Reference Citation Analysis]
20 Alonso-Gonzalez A, Calaza M, Amigo J, González-Peñas J, Martínez-Regueiro R, Fernández-Prieto M, Parellada M, Arango C, Rodriguez-Fontenla C, Carracedo A. Exploring the biological role of postzygotic and germinal de novo mutations in ASD. Sci Rep 2021;11:319. [PMID: 33431980 DOI: 10.1038/s41598-020-79412-w] [Cited by in F6Publishing: 2] [Reference Citation Analysis]
21 Salomone J, Qin S, Fufa TD, Cain B, Farrow E, Guan B, Hufnagel RB, Nakafuku M, Lim HW, Campbell K, Gebelein B. Conserved Gsx2/Ind homeodomain monomer versus homodimer DNA binding defines regulatory outcomes in flies and mice. Genes Dev 2021;35:157-74. [PMID: 33334823 DOI: 10.1101/gad.343053.120] [Cited by in Crossref: 2] [Cited by in F6Publishing: 7] [Article Influence: 1.0] [Reference Citation Analysis]
22 Chen CCL, Deshmukh S, Jessa S, Hadjadj D, Lisi V, Andrade AF, Faury D, Jawhar W, Dali R, Suzuki H, Pathania M, A D, Dubois F, Woodward E, Hébert S, Coutelier M, Karamchandani J, Albrecht S, Brandner S, De Jay N, Gayden T, Bajic A, Harutyunyan AS, Marchione DM, Mikael LG, Juretic N, Zeinieh M, Russo C, Maestro N, Bassenden AV, Hauser P, Virga J, Bognar L, Klekner A, Zapotocky M, Vicha A, Krskova L, Vanova K, Zamecnik J, Sumerauer D, Ekert PG, Ziegler DS, Ellezam B, Filbin MG, Blanchette M, Hansford JR, Khuong-Quang DA, Berghuis AM, Weil AG, Garcia BA, Garzia L, Mack SC, Beroukhim R, Ligon KL, Taylor MD, Bandopadhayay P, Kramm C, Pfister SM, Korshunov A, Sturm D, Jones DTW, Salomoni P, Kleinman CL, Jabado N. Histone H3.3G34-Mutant Interneuron Progenitors Co-opt PDGFRA for Gliomagenesis. Cell 2020;183:1617-1633.e22. [PMID: 33259802 DOI: 10.1016/j.cell.2020.11.012] [Cited by in Crossref: 10] [Cited by in F6Publishing: 27] [Article Influence: 5.0] [Reference Citation Analysis]
23 Rubin AN, Malik R, Cho KKA, Lim KJ, Lindtner S, Robinson Schwartz SE, Vogt D, Sohal VS, Rubenstein JLR. Regulatory Elements Inserted into AAVs Confer Preferential Activity in Cortical Interneurons. eNeuro 2020;7:ENEURO. [PMID: 33199411 DOI: 10.1523/ENEURO.0211-20.2020] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 1.5] [Reference Citation Analysis]
24 Magalhães SA, Foresti ML, Barros VN, Mello LE. Marmosets have a greater diversity of c-Fos response after hyperstimulation in distinct cortical regions as compared to rats. J Comp Neurol 2021;529:1628-41. [PMID: 32975324 DOI: 10.1002/cne.25044] [Reference Citation Analysis]
25 D'haene E, Vergult S. Interpreting the impact of noncoding structural variation in neurodevelopmental disorders. Genet Med 2021;23:34-46. [PMID: 32973355 DOI: 10.1038/s41436-020-00974-1] [Cited by in Crossref: 8] [Cited by in F6Publishing: 13] [Article Influence: 4.0] [Reference Citation Analysis]
26 McGregor MM, McKinsey GL, Girasole AE, Bair-Marshall CJ, Rubenstein JLR, Nelson AB. Functionally Distinct Connectivity of Developmentally Targeted Striosome Neurons. Cell Rep 2019;29:1419-1428.e5. [PMID: 31693884 DOI: 10.1016/j.celrep.2019.09.076] [Cited by in Crossref: 25] [Cited by in F6Publishing: 29] [Article Influence: 12.5] [Reference Citation Analysis]
27 Brody T, Yavatkar A, Kuzin A, Odenwald WF. Ultraconserved Non-coding DNA Within Diptera and Hymenoptera. G3 (Bethesda) 2020;10:3015-24. [PMID: 32601058 DOI: 10.1534/g3.120.401502] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
28 Lindtner S, Catta-Preta R, Tian H, Su-Feher L, Price JD, Dickel DE, Greiner V, Silberberg SN, McKinsey GL, McManus MT, Pennacchio LA, Visel A, Nord AS, Rubenstein JLR. Genomic Resolution of DLX-Orchestrated Transcriptional Circuits Driving Development of Forebrain GABAergic Neurons. Cell Rep 2019;28:2048-2063.e8. [PMID: 31433982 DOI: 10.1016/j.celrep.2019.07.022] [Cited by in Crossref: 19] [Cited by in F6Publishing: 29] [Article Influence: 9.5] [Reference Citation Analysis]
29 Lee CM, Zhou L, Liu J, Shi J, Geng Y, Liu M, Wang J, Su X, Barad N, Wang J, Sun YE, Lin Q. Single-cell RNA-seq analysis revealed long-lasting adverse effects of tamoxifen on neurogenesis in prenatal and adult brains. Proc Natl Acad Sci U S A 2020;117:19578-89. [PMID: 32727894 DOI: 10.1073/pnas.1918883117] [Cited by in Crossref: 7] [Cited by in F6Publishing: 14] [Article Influence: 3.5] [Reference Citation Analysis]
30 Jourdon A, Scuderi S, Capauto D, Abyzov A, Vaccarino FM. PsychENCODE and beyond: transcriptomics and epigenomics of brain development and organoids. Neuropsychopharmacology 2021;46:70-85. [PMID: 32659782 DOI: 10.1038/s41386-020-0763-3] [Cited by in Crossref: 11] [Cited by in F6Publishing: 5] [Article Influence: 5.5] [Reference Citation Analysis]
31 Markenscoff-Papadimitriou E, Whalen S, Przytycki P, Thomas R, Binyameen F, Nowakowski TJ, Kriegstein AR, Sanders SJ, State MW, Pollard KS, Rubenstein JL. A Chromatin Accessibility Atlas of the Developing Human Telencephalon. Cell 2020;182:754-769.e18. [PMID: 32610082 DOI: 10.1016/j.cell.2020.06.002] [Cited by in Crossref: 15] [Cited by in F6Publishing: 23] [Article Influence: 7.5] [Reference Citation Analysis]
32 Stroud H, Yang MG, Tsitohay YN, Davis CP, Sherman MA, Hrvatin S, Ling E, Greenberg ME. An Activity-Mediated Transition in Transcription in Early Postnatal Neurons. Neuron 2020;107:874-890.e8. [PMID: 32589877 DOI: 10.1016/j.neuron.2020.06.008] [Cited by in Crossref: 15] [Cited by in F6Publishing: 17] [Article Influence: 7.5] [Reference Citation Analysis]
33 Clément Y, Torbey P, Gilardi-Hebenstreit P, Crollius HR. Enhancer-gene maps in the human and zebrafish genomes using evolutionary linkage conservation. Nucleic Acids Res 2020;48:2357-71. [PMID: 31943068 DOI: 10.1093/nar/gkz1199] [Cited by in Crossref: 13] [Cited by in F6Publishing: 13] [Article Influence: 6.5] [Reference Citation Analysis]
34 Niu X, Deng K, Liu L, Yang K, Hu X. A statistical framework for predicting critical regions of p53-dependent enhancers. Brief Bioinform 2021;22:bbaa053. [PMID: 32392580 DOI: 10.1093/bib/bbaa053] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
35 Hook PW, McCallion AS. Leveraging mouse chromatin data for heritability enrichment informs common disease architecture and reveals cortical layer contributions to schizophrenia. Genome Res 2020;30:528-39. [PMID: 32303558 DOI: 10.1101/gr.256578.119] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 4.0] [Reference Citation Analysis]
36 Chen LF, Lin YT, Gallegos DA, Hazlett MF, Gómez-Schiavon M, Yang MG, Kalmeta B, Zhou AS, Holtzman L, Gersbach CA, Grandl J, Buchler NE, West AE. Enhancer Histone Acetylation Modulates Transcriptional Bursting Dynamics of Neuronal Activity-Inducible Genes. Cell Rep 2019;26:1174-1188.e5. [PMID: 30699347 DOI: 10.1016/j.celrep.2019.01.032] [Cited by in Crossref: 58] [Cited by in F6Publishing: 58] [Article Influence: 29.0] [Reference Citation Analysis]
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38 Castelijns B, Baak ML, Timpanaro IS, Wiggers CRM, Vermunt MW, Shang P, Kondova I, Geeven G, Bianchi V, de Laat W, Geijsen N, Creyghton MP. Hominin-specific regulatory elements selectively emerged in oligodendrocytes and are disrupted in autism patients. Nat Commun 2020;11:301. [PMID: 31949148 DOI: 10.1038/s41467-019-14269-w] [Cited by in Crossref: 12] [Cited by in F6Publishing: 12] [Article Influence: 6.0] [Reference Citation Analysis]
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40 Ryan GE, Farley EK. Functional genomic approaches to elucidate the role of enhancers during development. Wiley Interdiscip Rev Syst Biol Med 2020;12:e1467. [PMID: 31808313 DOI: 10.1002/wsbm.1467] [Cited by in Crossref: 2] [Cited by in F6Publishing: 5] [Article Influence: 0.7] [Reference Citation Analysis]
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42 Fueyo R, Iacobucci S, Pappa S, Estarás C, Lois S, Vicioso-Mantis M, Navarro C, Cruz-Molina S, Reyes JC, Rada-Iglesias Á, de la Cruz X, Martínez-Balbás MA. Lineage specific transcription factors and epigenetic regulators mediate TGFβ-dependent enhancer activation. Nucleic Acids Res 2018;46:3351-65. [PMID: 29438503 DOI: 10.1093/nar/gky093] [Cited by in Crossref: 10] [Cited by in F6Publishing: 14] [Article Influence: 3.3] [Reference Citation Analysis]
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