For: | Nossa CW, Oberdorf WE, Yang L, Aas JA, Paster BJ, DeSantis TZ, Brodie EL, Malamud D, Poles MA, Pei Z. Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome. World J Gastroenterol 2010; 16(33): 4135-4144 [PMID: 20806429 DOI: 10.3748/wjg.v16.i33.4135] |
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URL: | https://www.wjgnet.com/1007-9327/full/v16/i33/4135.htm |
Number | Citing Articles |
1 |
Hiu-Yin Lao, Timothy Ting-Leung Ng, Ryan Yik-Lam Wong, Celia Sze-Ting Wong, Lam-Kwong Lee, Denise Sze-Hang Wong, Chloe Toi-Mei Chan, Stephanie Hoi-Ching Jim, Jake Siu-Lun Leung, Hazel Wing-Hei Lo, Ivan Tak-Fai Wong, Miranda Chong-Yee Yau, Jimmy Yiu-Wing Lam, Alan Ka-Lun Wu, Gilman Kit-Hang Siu, Sandra S. Richter. The Clinical Utility of Two High-Throughput 16S rRNA Gene Sequencing Workflows for Taxonomic Assignment of Unidentifiable Bacterial Pathogens in Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry. Journal of Clinical Microbiology 2022; 60(1) doi: 10.1128/JCM.01769-21
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2 |
Cindy H. Nakatsu, Noel B. Pavlovic, Muruleedhara N. Byappanahalli. Bacteria common to rhizosphere communities of Asiatic bittersweet across a post-glacial landscape. Frontiers in Ecology and Evolution 2022; 10 doi: 10.3389/fevo.2022.999099
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3 |
Yael R. Nobel, Erik J. Snider, Griselda Compres, Daniel E. Freedberg, Hossein Khiabanian, Charles J. Lightdale, Nora C. Toussaint, Julian A. Abrams. Increasing Dietary Fiber Intake Is Associated with a Distinct Esophageal Microbiome. Clinical and Translational Gastroenterology 2018; 9(10): e199 doi: 10.1038/s41424-018-0067-7
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4 |
Chao Yang, Yiying Zhao, Suji Im, Cindy Nakatsu, Yava Jones-Hall, Qing Jiang. Vitamin E delta-tocotrienol and metabolite 13’-carboxychromanol inhibit colitis-associated colon tumorigenesis and modulate gut microbiota in mice. The Journal of Nutritional Biochemistry 2021; 89: 108567 doi: 10.1016/j.jnutbio.2020.108567
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5 |
Xin Huang, Jianye Zeng, Shilin Li, Ji Chen, Hongyan Wang, Chengtao Li, Suhua Zhang. 16S rRNA, metagenomics and 2bRAD-M sequencing to decode human thanatomicrobiome. Scientific Data 2024; 11(1) doi: 10.1038/s41597-024-03518-3
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6 |
Marcio Luis Busi Da Silva, Mauricio Egídio Cantão, Melissa Paola Mezzari, Jie Ma, Carlos Wolfgang Nossa. Assessment of Bacterial and Archaeal Community Structure in Swine Wastewater Treatment Processes. Microbial Ecology 2015; 70(1): 77 doi: 10.1007/s00248-014-0537-8
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7 |
Helena Modrá, Eva Gruberová, Ondřej Konečný, Vít Ulmann, Petra Kaucká, Markéta Vlková, Antonín Tůma, Taťana Halešová, Jan Kudělka, Milan Geršl, Ivo Pavlík. Influx and concentration of triazine pesticides in the Amaterska cave system, Moravian Karst, Czech Republic. Journal of Soils and Sediments 2018; 18(2): 640 doi: 10.1007/s11368-017-1831-0
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8 |
Nur Azimah Osman, Millawati Gani, Roberta Chaya Tawie Tingga, Muhammad Abu Bakar Abdul‐Latiff, Abd Rahman Mohd‐Ridwan, Eddie Chan, Badrul Munir Md‐Zain. Unveiling the Gut Microbiota of Pig‐Tailed Macaque (Macaca nemestrina) in Selected Habitats in Malaysia. Journal of Medical Primatology 2024; 53(5) doi: 10.1111/jmp.12737
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9 |
Lin Chen, Weibing Xun, Li Sun, Nan Zhang, Qirong Shen, Ruifu Zhang. Effect of different long-term fertilization regimes on the viral community in an agricultural soil of Southern China. European Journal of Soil Biology 2014; 62: 121 doi: 10.1016/j.ejsobi.2014.03.006
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10 |
Huisong Lee, Hyeon Kook Lee, Seog Ki Min, Won Hee Lee. 16S rDNA microbiome composition pattern analysis as a diagnostic biomarker for biliary tract cancer. World Journal of Surgical Oncology 2020; 18(1) doi: 10.1186/s12957-020-1793-3
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11 |
Ze Ren, Shudan Ye, Hongxuan Li, Xilei Huang, Luyao Chen. Differentiation of cognate bacterial communities in thermokarst landscapes: implications for ecological consequences of permafrost degradation. Biogeosciences 2023; 20(20): 4241 doi: 10.5194/bg-20-4241-2023
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12 |
Anna Klindworth, Elmar Pruesse, Timmy Schweer, Jörg Peplies, Christian Quast, Matthias Horn, Frank Oliver Glöckner. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Research 2013; 41(1): e1 doi: 10.1093/nar/gks808
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13 |
Ching-Wei Chang, Chia-Yuan Liu, Hung-Chang Lee, Yen-Hua Huang, Li-Hui Li, Jen-Shiu Chiang Chiau, Tsang-En Wang, Cheng-Hsin Chu, Shou-Chuan Shih, Tung-Hu Tsai, Yu-Jen Chen. Lactobacillus casei Variety rhamnosus Probiotic Preventively Attenuates 5-Fluorouracil/Oxaliplatin-Induced Intestinal Injury in a Syngeneic Colorectal Cancer Model. Frontiers in Microbiology 2018; 9 doi: 10.3389/fmicb.2018.00983
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14 |
Junxian He, Menghui Ma, Zhenhan Xu, Jintao Guo, Haicheng Chen, Xing Yang, Peigen Chen, Guihua Liu, Benjamin M. Liu. Association between semen microbiome disorder and sperm DNA damage. Microbiology Spectrum 2024; 12(8) doi: 10.1128/spectrum.00759-24
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15 |
Chenyu Liu, Zhiling Liu, Bofei Cui, Haiqing Yang, Chengda Gao, Mingming Chang, Yueping Liu. Effects of returning peach branch waste to fields on soil carbon cycle mediated by soil microbial communities. Frontiers in Microbiology 2024; 15 doi: 10.3389/fmicb.2024.1406661
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16 |
Tomasz Dulski, Roman Kujawa, Martyna Godzieba, Slawomir Ciesielski. Effect of Salinity on the Gut Microbiome of Pike Fry (Esox lucius). Applied Sciences 2020; 10(7): 2506 doi: 10.3390/app10072506
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17 |
Yan Jiang, Xuezhou Liu, Yongjiang Xu, Bao Shi, Bin Wang. Microbiota characteristics in Sebastes schlegelii intestine in early life stages. Journal of Oceanology and Limnology 2020; 38(1): 275 doi: 10.1007/s00343-019-9011-2
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18 |
Yuejuan Jiang, Qiaohong Li, Wenqin Mao, Wengting Tang, James F. White, Haiyan Li. Endophytic bacterial community of Stellera chamaejasme L. and its role in improving host plants' competitiveness in grasslands. Environmental Microbiology 2022; 24(8): 3322 doi: 10.1111/1462-2920.15897
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19 |
Kang Ma, Ze Ren, Jiaming Ma, Nannan Chen, Jingling Liu. Differential patterns and assembly processes of bacterial communities from distinct microhabitats in a subtropical estuary. Frontiers in Marine Science 2022; 9 doi: 10.3389/fmars.2022.1039387
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20 |
Wei Huang, Ziqiang Lin, Ailing Sun, JieMin Deng, Anne Manyande, Hongbing Xiang, Gao Feng Zhao, Qingxiong Hong. The role of gut microbiota in diabetic peripheral neuropathy rats with cognitive dysfunction. Frontiers in Microbiology 2023; 14 doi: 10.3389/fmicb.2023.1156591
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21 |
Nadia Darwish, Jonathan Shao, Lori L. Schreier, Monika Proszkowiec-Weglarz. Choice of 16S ribosomal RNA primers affects the microbiome analysis in chicken ceca. Scientific Reports 2021; 11(1) doi: 10.1038/s41598-021-91387-w
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22 |
Xiaozhou Fan, Alexander V Alekseyenko, Jing Wu, Brandilyn A Peters, Eric J Jacobs, Susan M Gapstur, Mark P Purdue, Christian C Abnet, Rachael Stolzenberg-Solomon, George Miller, Jacques Ravel, Richard B Hayes, Jiyoung Ahn. Human oral microbiome and prospective risk for pancreatic cancer: a population-based nested case-control study. Gut 2018; 67(1): 120 doi: 10.1136/gutjnl-2016-312580
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23 |
Melita Jaric, Jonathan Segal, Eugenia Silva-Herzog, Lisa Schneper, Kalai Mathee, Giri Narasimhan. Better primer design for metagenomics applications by increasing taxonomic distinguishability. BMC Proceedings 2013; 7(S7) doi: 10.1186/1753-6561-7-S7-S4
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24 |
François-Étienne Sylvain, Sidki Bouslama, Aleicia Holland, Nicolas Leroux, Pierre-Luc Mercier, Adalberto Luis Val, Nicolas Derome, Eva C. Sonnenschein, Elias Broman, Pengfa Li. Bacterioplankton Communities in Dissolved Organic Carbon-Rich Amazonian Black Water. Microbiology Spectrum 2023; 11(3) doi: 10.1128/spectrum.04793-22
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25 |
Sylvie Manguin, Chung Thuy Ngo, Krajana Tainchum, Waraporn Juntarajumnong, Theeraphap Chareonviriyaphap, Anne-Laure Michon, Estelle Jumas-Bilak. Anopheles mosquitoes - New insights into malaria vectors. 2013; doi: 10.5772/55610
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26 |
Bingchang Zhang, Weidong Kong, Nan Wu, Yuanming Zhang. Bacterial diversity and community along the succession of biological soil crusts in the Gurbantunggut Desert, Northern China. Journal of Basic Microbiology 2016; 56(6): 670 doi: 10.1002/jobm.201500751
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27 |
Wancai XIA, Mei ZHAO, Dali WANG, Fan WANG, Hua CHEN, Guoqi LIU, Lifeng ZHU, Dayong LI. Invasion and defense of the basic social unit in a nonhuman primate society leads to sexual differences in the gut microbiome. Integrative Zoology 2022; 17(1): 168 doi: 10.1111/1749-4877.12608
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28 |
Naraporn Somboonna, Alisa Wilantho, Chutika Srisuttiyakorn, Anunchai Assawamakin, Sissades Tongsima. Bacterial communities on facial skin of teenage and elderly Thai females. Archives of Microbiology 2017; 199(7): 1035 doi: 10.1007/s00203-017-1375-0
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29 |
Lin Chen, Kai Fang, Jie Zhou, Zhi-Ping Yang, Xing-Fan Dong, Guang-Hui Dai, Han-Bo Zhang. Enrichment of soil rare bacteria in root by an invasive plant Ageratina adenophora. Science of The Total Environment 2019; 683: 202 doi: 10.1016/j.scitotenv.2019.05.220
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30 |
Yue Hu, Fang Chen, Haiyong Ye, Bin Lu. Integrative analysis of the gut microbiome and metabolome in a rat model with stress induced irritable bowel syndrome. Scientific Reports 2021; 11(1) doi: 10.1038/s41598-021-97083-z
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31 |
Minghao Dong, Hanjun Zhou, Jing Wang, Jiahao Yang, Jiazheng Lai, Yulu Chen, Feng Sun, Xiefeng Ye, Yunjie Wu. Responses of soil microbial metabolism, function and soil quality to long-term addition of organic materials with different carbon sources. Biochar 2024; 6(1) doi: 10.1007/s42773-024-00367-6
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32 |
Matthew C. Thomas, Dallas K. Thomas, L. Brent Selinger, G. Douglas Inglis. spyder, a new method for in silico design and assessment of 16S rRNA gene primers for molecular microbial ecology. FEMS Microbiology Letters 2011; 320(2): 152 doi: 10.1111/j.1574-6968.2011.02302.x
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33 |
Huabin ZHANG, Wengang LI, Genjun TU, Ke SUN, Liuyang YANG, Ziyi WANG, Zirui WU, Yongkang ZHOU, Song ZHANG, Hao SUN, Changshun SHENG, Xiaoping WANG, Rongjun ZHANG, Xiaobing WU, Tao PAN. Host Genetic Background Impacts Microbiome Composition in Newborn Alligator. Asian Herpetological Research 2023; 14(3): 237 doi: 10.3724/ahr.2095-0357.2023.0007
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34 |
春香 李. The Application of 16SrRNA Sequences Analysis in Oral Microbial Community. QianRen Biology 2014; 1(02): 11 doi: 10.12677/QRB.2014.12007
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35 |
Shan-Hua Yang, Chi Chen, Yunli Eric Hsieh, Sung-Yin Yang, Hau-Wen Li, Tzu-Yun Ching, Chia-Hui Wang, Ching-Fong Chang, Sen-Lin Tang, Guan-Chung Wu. Bacterial Dynamics in the Accessory Nidamental Gland of <i>Sepioteuthis lessoniana</i> throughout Maturation. Microbes and Environments 2021; 36(4): n/a doi: 10.1264/jsme2.ME21030
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36 |
Haiping Zheng, Tianjie Yang, Yanzhuo Bao, Panpan He, Keming Yang, Xinlan Mei, Zhong Wei, Yangchun Xu, Qirong Shen, Samiran Banerjee. Network analysis and subsequent culturing reveal keystone taxa involved in microbial litter decomposition dynamics. Soil Biology and Biochemistry 2021; 157: 108230 doi: 10.1016/j.soilbio.2021.108230
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37 |
Tien-En Chang, Jiing-Chyuan Luo, Ueng-Cheng Yang, Yi-Hsiang Huang, Ming-Chih Hou, Fa-Yauh Lee. Fecal microbiota profile in patients with inflammatory bowel disease in Taiwan. Journal of the Chinese Medical Association 2021; 84(6): 580 doi: 10.1097/JCMA.0000000000000532
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38 |
Yi Du, Yulin Zhang, Zhihao Zhang, Waqar Islam, Fanjiang Zeng. Comparing root-associated microbial communities in Tamarix ramosissima across three Xinjiang basins, China. Applied Soil Ecology 2024; 200: 105440 doi: 10.1016/j.apsoil.2024.105440
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39 |
Rafael Mazer Etto, Leonardo Magalhães Cruz, Ederson da Conceição Jesus, Carolina Weigert Galvão, Franklin Galvão, Emanuel Maltempi de Souza, Fábio de Oliveira Pedrosa, Maria Berenice Reynaud Steffens. Seasonal changes in dominant bacterial taxa from acidic peatlands of the Atlantic Rain Forest. Research in Microbiology 2014; 165(7): 517 doi: 10.1016/j.resmic.2014.05.036
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40 |
Karoline Faust, J. Fah Sathirapongsasuti, Jacques Izard, Nicola Segata, Dirk Gevers, Jeroen Raes, Curtis Huttenhower, Christos A. Ouzounis. Microbial Co-occurrence Relationships in the Human Microbiome. PLoS Computational Biology 2012; 8(7): e1002606 doi: 10.1371/journal.pcbi.1002606
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41 |
Christine Dominianni, Rashmi Sinha, James J. Goedert, Zhiheng Pei, Liying Yang, Richard B. Hayes, Jiyoung Ahn, Brenda A Wilson. Sex, Body Mass Index, and Dietary Fiber Intake Influence the Human Gut Microbiome. PLOS ONE 2015; 10(4): e0124599 doi: 10.1371/journal.pone.0124599
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42 |
Tom Bott, George Shaw, Simon Gregory. A simple method for testing and controlling inhibition in soil and sediment samples for qPCR. Journal of Microbiological Methods 2023; 212: 106795 doi: 10.1016/j.mimet.2023.106795
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43 |
Shao K. Huang, Kun T. Ye, Wei F. Huang, Bi H. Ying, Xin Su, Li H. Lin, Jiang H. Li, Yan P. Chen, Ji L. Li, Xiu L. Bao, Jian Z. Hu, Ashley Shade.
Influence of Feeding Type and
Nosema ceranae
Infection on the Gut Microbiota of
Apis cerana
Workers
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44 |
Xiu-lan Xie, Gang Zhang, Hai-hui Gao, Ke-xin Deng, Yue-feng Chu, Dao-yan Wu, Shi-ying Yan, Jie Zhou, Jian Zhao. Analysis of bovine colostrum microbiota at a dairy farm in Ningxia, China. International Dairy Journal 2021; 119: 104984 doi: 10.1016/j.idairyj.2021.104984
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45 |
Jianyong Liang, Tiecheng Wu, Tao Wang, Yuejun Ma, Yurong Li, Shengguo Zhao, Yanli Guo, Bin Liu. Moringa oleifera leaf ethanolic extract benefits cashmere goat semen quality via improving rumen microbiota and metabolome. Frontiers in Veterinary Science 2023; 10 doi: 10.3389/fvets.2023.1049093
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46 |
Ahmad R. Alsayed, Anas Abed, Heba A. Khader, Laith M. H. Al-Shdifat, Luai Hasoun, Mamoon M. D. Al-Rshaidat, Mohammad Alkhatib, Malek Zihlif. Molecular Accounting and Profiling of Human Respiratory Microbial Communities: Toward Precision Medicine by Targeting the Respiratory Microbiome for Disease Diagnosis and Treatment. International Journal of Molecular Sciences 2023; 24(4): 4086 doi: 10.3390/ijms24044086
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47 |
Stefano Castellana, Vittoriana De Laurentiis, Angelica Bianco, Laura Del Sambro, Massimo Grassi, Francesco De Leonardis, Anna Maria Derobertis, Carmen De Carlo, Eleonora Sparapano, Adriana Mosca, Stefania Stolfa, Luigi Ronga, Luigi Santacroce, Maria Chironna, Michela Parisi, Loredana Capozzi, Antonio Parisi. Pannonibacter anstelovis sp. nov. Isolated from Two Cases of Bloodstream Infections in Paediatric Patients. Microorganisms 2024; 12(4): 799 doi: 10.3390/microorganisms12040799
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48 |
Jianguo Guo, Yi Xiong, Taisheng Kang, Hua Zhu, Qiwen Yang, Chuan Qin. Effect of formaldehyde exposure on bacterial communities in simulating indoor environments. Scientific Reports 2021; 11(1) doi: 10.1038/s41598-021-00197-7
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49 |
Y. Yang, H. Wu, Sh. Wang. Comparison of Microbial Communities in the Rhizosphere Soils from Two Varieties of Camellia sinensis in Yunnan Province, China. Microbiology 2021; 90(6): 801 doi: 10.1134/S0026261721060163
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50 |
Hsin-I Chiang, Jian-Rong Li, Chun-Chi Liu, Po-Yu Liu, Hsin-Hua Chen, Yi-Ming Chen, Joung-Liang Lan, Der-Yuan Chen. An Association of Gut Microbiota with Different Phenotypes in Chinese Patients with Rheumatoid Arthritis. Journal of Clinical Medicine 2019; 8(11): 1770 doi: 10.3390/jcm8111770
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51 |
Indu Pant, Ravindranath Shashidhar. Inter-species competition of surface bacterial flora of pomegranate and their role in spoilage. World Journal of Microbiology and Biotechnology 2023; 39(10) doi: 10.1007/s11274-023-03709-x
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52 |
Yuan-Cheng Si, Chen-Chen Ren, Er-Wei Zhang, Zhao-Xia Kang, Xi-Ya Mo, Qing-Qing Li, Bo Chen. Integrative Analysis of the Gut Microbiota and Metabolome in Obese Mice with Electroacupuncture by 16S rRNA Gene Sequencing and HPLC–MS-based Metabolic Profiling. The American Journal of Chinese Medicine 2022; 50(03): 673 doi: 10.1142/S0192415X22500276
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53 |
Jianzhong Hu, Paula Benny, Michelle Wang, Yula Ma, Luca Lambertini, Inga Peter, Yajuan Xu, Men-Jean Lee. Intrauterine Growth Restriction Is Associated with Unique Features of the Reproductive Microbiome. Reproductive Sciences 2021; 28(3): 828 doi: 10.1007/s43032-020-00374-5
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54 |
Denise Tornavoi de Castro, Cássio do Nascimento, Oswaldo Luiz Alves, Emerson de Souza Santos, José Augusto Marcondes Agnelli, Andréa Cândido dos Reis. Analysis of the oral microbiome on the surface of modified dental polymers. Archives of Oral Biology 2018; 93: 107 doi: 10.1016/j.archoralbio.2018.06.005
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55 |
Tibebu Habtewold, Luc Duchateau, George K. Christophides. Flow cytometry analysis of the microbiota associated with the midguts of vector mosquitoes. Parasites & Vectors 2016; 9(1) doi: 10.1186/s13071-016-1438-0
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56 |
Na Li, Qin-Ming Cai, Ni-Ya Hu, Shu-ling Jiang, Fu-Qing Chen, Qiao-Qiao Hu, Fen Yang, Chao-Zhu He. Pyrosequencing analysis of bacterial community changes in dental unit waterlines after chlorogenic acid treatment. Frontiers in Cellular and Infection Microbiology 2024; 14 doi: 10.3389/fcimb.2024.1303099
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57 |
Haoyue Liu, Jinan Cheng, Hui Jin, Zhongxiang Xu, Xiaoyan Yang, Deng Min, Xinxin Xu, Xiangfeng Shao, Dengxue Lu, Bo Qin. Characterization of Rhizosphere and Endophytic Microbial Communities Associated with Stipa purpurea and Their Correlation with Soil Environmental Factors. Plants 2022; 11(3): 363 doi: 10.3390/plants11030363
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58 |
Cecilia G. Flocco, Anika Methner, Franziska Burkart, Alicia Geppert, Jörg Overmann. Touching the (almost) untouchable: a minimally invasive workflow for microbiological and biomolecular analyses of cultural heritage objects. Frontiers in Microbiology 2023; 14 doi: 10.3389/fmicb.2023.1197837
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59 |
Jun Mu, Xia Cui, Mingjiao Shao, Yuxia Wang, Qiao Yang, Guangfeng Yang, Liying Zheng, O. Roger Anderson. Microbial origin of bioflocculation components within a promising natural bioflocculant resource of Ruditapes philippinarum conglutination mud from an aquaculture farm in Zhoushan, China. PLOS ONE 2019; 14(6): e0217679 doi: 10.1371/journal.pone.0217679
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60 |
Negash Kabtimer Bereded, Getachew Beneberu Abebe, Solomon Workneh Fanta, Manuel Curto, Herwig Waidbacher, Harald Meimberg, Konrad J. Domig. The gut bacterial microbiome of Nile tilapia (Oreochromis niloticus) from lakes across an altitudinal gradient. BMC Microbiology 2022; 22(1) doi: 10.1186/s12866-022-02496-z
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61 |
Qilin Huang, Guizhen Yang, Chenchen Tang, Biao Dou, You Hu, Hui Liu, Xiao Wu, Huan Zhang, Haikun Wang, Lirong Xu, Xiao-Dong Yang, Yanwu Xu, Yuejuan Zheng. Rujin Jiedu decoction protects against influenza virus infection by modulating gut microbiota. Heliyon 2024; 10(13): e34055 doi: 10.1016/j.heliyon.2024.e34055
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62 |
Qi Deng, Zhifeng Feng, Jin Xiang, Hao Wu, Xin Yang, Zhou Zhang, Cheng Li, Xiaofei Cheng, Min Xie, Shaoming Li. Comparative Analysis of Intestinal Morphology and Gut Microbiota of Spinibarbus sinensis Under Different Aquaculture Systems. Biology 2024; 13(11): 869 doi: 10.3390/biology13110869
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63 |
Raymond J.T. Kim, Kristi Biswas, Michael Hoggard, Michael W. Taylor, Richard G. Douglas. Paired analysis of the microbiota of surface mucus and whole‐tissue specimens in patients with chronic rhinosinusitis. International Forum of Allergy & Rhinology 2015; 5(10): 877 doi: 10.1002/alr.21600
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Jitrawadee Intirach, Xin Lv, Nataya Sutthanont, Benchi Cai, Danita Champakaew, Tao Chen, Qian Han, Zhiyue Lv. Molecular and next-generation sequencing analysis of tick-borne pathogens of Rhipicephalus ticks (Acari: Ixodidae) in cattle and dogs. Acta Tropica 2024; 252: 107138 doi: 10.1016/j.actatropica.2024.107138
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Ivan Kushkevych, Eliška Kobzová, Monika Vítězová, Tomáš Vítěz, Dani Dordević, Milan Bartoš. Acetogenic microorganisms in operating biogas plants depending on substrate combinations. Biologia 2019; 74(9): 1229 doi: 10.2478/s11756-019-00283-2
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Xueqing Shi, Kok Kwang Ng, Xiao-Ran Li, How Yong Ng. Investigation of Intertidal Wetland Sediment as a Novel Inoculation Source for Anaerobic Saline Wastewater Treatment. Environmental Science & Technology 2015; 49(10): 6231 doi: 10.1021/acs.est.5b00546
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Phillip R. Myer, MinSeok Kim, Harvey C. Freetly, Timothy P.L. Smith. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers. Journal of Microbiological Methods 2016; 127: 132 doi: 10.1016/j.mimet.2016.06.004
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Jun Mu, Qingxue Leng, Guangfeng Yang, Baikang Zhu. Anaerobic degradation of high-concentration polycyclic aromatic hydrocarbons (PAHs) in seawater sediments. Marine Pollution Bulletin 2021; 167: 112294 doi: 10.1016/j.marpolbul.2021.112294
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Cindy H. Nakatsu, Muruleedhara N. Byappanahalli, Meredith B. Nevers. Bacterial Community 16S rRNA Gene Sequencing Characterizes Riverine Microbial Impact on Lake Michigan. Frontiers in Microbiology 2019; 10 doi: 10.3389/fmicb.2019.00996
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François‐Étienne Sylvain, Eric Normandeau, Aleicia Holland, Adalberto Luis Val, Nicolas Derome. Genomics of Serrasalmidae teleosts through the lens of microbiome fingerprinting. Molecular Ecology 2022; 31(18): 4656 doi: 10.1111/mec.16574
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Ivan Kushkevych, Jiří Cejnar, Monika Vítězová, Tomáš Vítěz, Dani Dordević, Yannick J. Bomble. Occurrence of Thermophilic Microorganisms in Different Full Scale Biogas Plants. International Journal of Molecular Sciences 2019; 21(1): 283 doi: 10.3390/ijms21010283
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Zhuocheng Liu, Yangang Yang, Shuangxuan Ji, Di Dong, Yinruizhi Li, Mengdi Wang, Liebao Han, Xueping Chen. Effects of Elevation and Distance from Highway on the Abundance and Community Structure of Bacteria in Soil along Qinghai-Tibet Highway. International Journal of Environmental Research and Public Health 2021; 18(24): 13137 doi: 10.3390/ijerph182413137
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Xuelei Zhang, Baoyang Xu, Zhenping Hou, Chunlin Xie, Yaorong Niu, Qiuzhong Dai, Xianghua Yan, Duanqin Wu. Dietary ε-Polylysine Affects on Gut Microbiota and Plasma Metabolites Profiling in Mice. Frontiers in Nutrition 2022; 9 doi: 10.3389/fnut.2022.842686
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Fabiana de Melo, Fernanda Carpes Milanesi, Patrícia Daniela Melchiors Angst, Rui Vicente Oppermann. A systematic review of the microbiota composition in various peri-implant conditions: data from 16S rRNA gene sequencing. Archives of Oral Biology 2020; 117: 104776 doi: 10.1016/j.archoralbio.2020.104776
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Chenyu Liu, Defeng Han, Haiqing Yang, Zhiling Liu, Chengda Gao, Yueping Liu. Effects of peach branch organic fertilizer on the soil microbial community in peach orachards. Frontiers in Microbiology 2023; 14 doi: 10.3389/fmicb.2023.1223420
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Ji-Hoi Moon, Jae-Hyung Lee. Probing the diversity of healthy oral microbiome with bioinformatics approaches. BMB Reports 2016; 49(12): 662 doi: 10.5483/BMBRep.2016.49.12.164
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Purnima S. Kumar, Michael R. Brooker, Scot E. Dowd, Terry Camerlengo, Jonathan H. Badger. Target Region Selection Is a Critical Determinant of Community Fingerprints Generated by 16S Pyrosequencing. PLoS ONE 2011; 6(6): e20956 doi: 10.1371/journal.pone.0020956
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Martin Černý, Monika Vítězová, Tomáš Vítěz, Milan Bartoš, Ivan Kushkevych. Variation in the Distribution of Hydrogen Producers from the Clostridiales Order in Biogas Reactors Depending on Different Input Substrates. Energies 2018; 11(12): 3270 doi: 10.3390/en11123270
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Xiao Wu, Kathryn Berkow, Daniel N Frank, Ellen Li, Ajay S Gulati, Wei Zhu. Comparative analysis of microbiome measurement platforms using latent variable structural equation modeling. BMC Bioinformatics 2013; 14(1) doi: 10.1186/1471-2105-14-79
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Madhura Castelino, Stephen Eyre, John Moat, Graeme Fox, Paul Martin, Pauline Ho, Mathew Upton, Anne Barton. Optimisation of methods for bacterial skin microbiome investigation: primer selection and comparison of the 454 versus MiSeq platform. BMC Microbiology 2017; 17(1) doi: 10.1186/s12866-017-0927-4
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81 |
Shangmeng Li, Wei Fan, Gang Xu, Ying Cao, Xin Zhao, Suwei Hao, Bin Deng, Siyuan Ren, Shanglian Hu. Bio-organic fertilizers improve Dendrocalamus farinosus growth by remolding the soil microbiome and metabolome. Frontiers in Microbiology 2023; 14 doi: 10.3389/fmicb.2023.1117355
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