Role of RNA secondary structure in emergence of compartment specific hepatitis B virus immune escape variants

doi:10.5501/wjv.v5.i4.161

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Nov 12, 2016 (publication date) through Jan 31, 2025

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World Journal of Virology

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2220-3249

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Baishideng Publishing Group Inc, 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA

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World J Virol. Nov 12, 2016; 5(4): 161-169
Published online Nov 12, 2016. doi: 10.5501/wjv.v5.i4.161

Table 1 Comparison of nucleotides at phylogenetically informative sites of subgenotypes A1 and A2 in GenBank sequences and in sequences isolated from our study population

Nucleotide Position of the HBV genome¹	Base present in reference GenBank sequences			Base in genotype A1 sequences isolated from serum/plasma²	Base in genotype A2 sequences isolated from PBL²
Nucleotide Position of the HBV genome¹	Aa/A1 (Asia)	Aa/A1 (South Africa)	Ae/A2 (Europe/United States)		Base in genotype A2 sequences isolated from PBL²
505	c	t	t	c	t
514	c	c	a	c	a
616	a	a	g	a	g
619	t	t	c	t	c

¹Nucleotide positions indicate distance from the unique EcoRI site in the HBV genome;

²Sequences isolated from our study population. HBV: Hepatitis B virus; PBL: Peripheral blood leukocyte.

Citation: Datta S, Chakravarty R. Role of RNA secondary structure in emergence of compartment specific hepatitis B virus immune escape variants. World J Virol 2016; 5(4): 161-169
URL: https://www.wjgnet.com/2220-3249/full/v5/i4/161.htm
DOI: https://dx.doi.org/10.5501/wjv.v5.i4.161