Extended role for insertion sequence elements in the antibiotic resistance of Bacteroides

Figure 3 The nucleotide sequences of the promoters of some important Bacteroides antibiotic resistance genes. The consensus sequence with the conserved regions (A), and the actual promoter sequences (B). The match with the consensus is shown in bold capital letters, proven transcriptional initiation sites are marked in bold with an arrowhead next to them; n denotes any nucleotide, and small letters in the consensus indicate less conserved bases. The own promoters of cepA and cfxA were searched for bioinformatically and are not IS elements next to them in the list. The own promoter sequence of cfiA is from our unpublished preliminary experiments made by ‘rapid amplification of cDNA ends’ capable of amplifying in PCR the 5’ end of the mRNA. Underlined -33 regions are parts of compound promoters and these parts originate only from insertion sequence elements in the cases of these promoters.