Case Report
Copyright ©The Author(s) 2022.
World J Clin Pediatr. Sep 9, 2022; 11(5): 429-436
Published online Sep 9, 2022. doi: 10.5409/wjcp.v11.i5.429
Table 1 Pathogenicity prediction of mutation/variant (s) identified in the ITGB2 gene in Patient 1 and Patient 2
Information/computation (in silico) predictive programs
c.920T>C (p.Leu307Pro) in exon 8
c.758G>A (p.Arg253His) in exon 7
c.262C>T (p.Gln88Ter) in exon 4
Human gene mutation database (HGMD)Not identifiedNot identifiedNot identified
National center for biotechnology information (NCBI): dbSNP and ClinVarNot identifiedUncertain significance rs200423927Not identified
Exome aggregation consortium (ExAC) and 1000 genomes projectNot identifiedExAC 0.0002817 heterozygous (only)Not identified
Mutation taster (http://www.mutationtaster.org/)Disease causingDisease causingDisease causing
PolyPhen (http://genetics.bwh.harvard.edu/pph2/)Probably damagingBenign-
SIFT (http://sift.jcvi.org/)DamagingDamaging-
ACMG classification (2015)Likely pathogenic (PM2, PM3, PP2, PP3)Likely pathogenic (PM2, PM3, PP2, PP3)Pathogenic (PVS1, PM2, PM3, PP3)