Gut microbiome profiling and colorectal cancer in African Americans and Caucasian Americans

doi:10.4291/wjgp.v9.i2.47

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World Journal of Gastrointestinal Pathophysiology

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2150-5330

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Baishideng Publishing Group Inc, 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA

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World J Gastrointest Pathophysiol. Sep 29, 2018; 9(2): 47-58
Published online Sep 29, 2018. doi: 10.4291/wjgp.v9.i2.47

Table 2 List of primers for bacterial genes specific for family, genus and species

Bacterial gene	Forward primer (5’-3’)	Reverse primer (5’-3’)	Ref.
Clostridium cluster XI	TGACGGTACYYNRKGAGGAAGCC	CTACGGTTRAGCCGTAGCCTTT	[63]
Clostridium cluster XIVa	GCGGTRCGGCAAGTCTGA	CCTCCGACACTCTAGTMCGAC	[64]
Clostridium cluster IV	GCACAAGCAGTGGAGT	CTTCCTCCGTTTTGTCAA	[65]
Bifidobacterium genus	GATTCTGGCTCAGGATGAACGC	CTGATAGGACGCGACCCCAT	[66]
Lactobacillus spp.	AGCAGTAGGGAATCTTCCA	CACCGCTACACATGGAG	[66]
Enterobacter (Family)	CATTGACGTTACCCGCAGAAGAAGC	CTCTACGAGACTCAAGCTTGC	[66]
Fusobacterium (genus)	GGATTTATTGGGCGTAAAGC	GGCATTCCTACAAATATCTACGAA	[67]
Fusobacterium nucleatum	CAACCATTACTTTAACTCTACCATGTTCA	GTTGACTTTACAGAAGGAGATTATGTAAAAATC	[68]
Clostridium sordelli	CTGAGACACGTCCAAACTCTAC	CCTCCTCAAGTACCGTCATTATC	-
Total bacteria	CGTGCCAGCAGCCGCGG	TGGACTACCAGGGTATCTAATCCTG

Citation: Farhana L, Antaki F, Murshed F, Mahmud H, Judd SL, Nangia-Makker P, Levi E, Yu Y, Majumdar AP. Gut microbiome profiling and colorectal cancer in African Americans and Caucasian Americans. World J Gastrointest Pathophysiol 2018; 9(2): 47-58
URL: https://www.wjgnet.com/2150-5330/full/v9/i2/47.htm
DOI: https://dx.doi.org/10.4291/wjgp.v9.i2.47