Identification of host miRNAs that may limit human rhinovirus replication

Table 6 Full target site list predicted by PITA on human rhinovirus-1B

Virus	microRNA	Start	End	dGduplex	dGopen	ddG
HRV-1B	miR-155	2901	2893	-15.12	-3.24	-11.87
HRV-1B	miR-128	1562	1554	-16.4	-5.28	-11.11
HRV-1B	miR-106b	2276	2268	-17.2	-6.29	-10.9
HRV-1B	miR-18a	2124	2116	-14.81	-4.9	-9.9
HRV-1B	miR-106b	4777	4769	-17.81	-7.96	-9.84
HRV-1B	miR-19b	6668	6660	-14.1	-5.07	-9.02
HRV-1B	miR-18a	7047	7039	-23.1	-15.01	-8.08
HRV-1B	miR-155	3186	3178	-14.3	-7.56	-6.73
HRV-1B1	miR-155	3723	3715	-14.9	-8.5	-6.39
HRV-1B	miR-19b	2016	2008	-12.11	-5.91	-6.19
HRV-1B	miR-18a	2570	2562	-16.8	-11.26	-5.53
HRV-1B	miR-18a	3108	3100	-13.5	-8.1	-5.39
HRV-1B	miR-128	3609	3601	-11.5	-6.32	-5.17
HRV-1B1	miR-19b	5095	5088	-12.53	-7.64	-4.88
HRV-1B1	miR-106b	5478	5470	-15.3	-10.46	-4.83
HRV-1B1	miR-155	6005	5997	-11.6	-7.01	-4.58
HRV-1B	miR-18a	4144	4138	-12.06	-7.91	-4.14
HRV-1B	miR-128	3513	3505	-14.3	-10.41	-3.88
HRV-1B	miR-19b	77	70	-10.42	-6.61	-3.8
HRV-1B	miR-106b	5542	5534	-10.6	-6.95	-3.64
HRV-1B	miR-155	5028	5020	-8.1	-4.94	-3.15
HRV-1B	miR-18a	4792	4784	-11.5	-8.37	-3.12
HRV-1B	miR-155	3552	3544	-12.6	-9.54	-3.05
HRV-1B	miR-106b	3585	3577	-12	-9.41	-2.58
HRV-1B	miR-18a	1686	1680	-14.19	-11.87	-2.31
HRV-1B	miR-106b	722	714	-4.36	-2.12	-2.23
HRV-1B	miR-128	2562	2554	-14.3	-12.1	-2.19
HRV-1B	miR-155	3975	3967	-13.8	-11.77	-2.02
HRV-1B	miR-128	442	434	-17.2	-15.21	-1.98
HRV-1B	miR-155	6621	6613	-6.5	-4.56	-1.93
HRV-1B	miR-155	4551	4543	-7.3	-5.68	-1.61
HRV-1B	miR-155	5978	5970	-7.9	-6.41	-1.48
HRV-1B	miR-18a	1431	1423	-6.6	-5.13	-1.46
HRV-1B	miR-19b	3248	3240	-8.71	-7.66	-1.04
HRV-1B	miR-106b	6598	6590	-11.8	-10.94	-0.85
HRV-1B1	miR-128	1829	1822	-12.9	-12.08	-0.81
HRV-1B	miR-155	6962	6954	-6	-5.38	-0.61
HRV-1B	miR-106b	569	563	-10.2	-9.77	-0.42
HRV-1B	miR-155	870	862	-9.57	-9.26	-0.3
HRV-1B	miR-18a	5478	5471	-10.7	-10.46	-0.23
HRV-1B	miR-155	3584	3576	-9.6	-9.41	-0.18
HRV-1B	miR-155	6258	6250	-9.17	-8.98	-0.18
HRV-1B	miR-19b	3550	3542	-10.4	-10.38	-0.019
HRV-1B	miR-106b	5269	5261	-10	-10	0.0096
HRV-1B	miR-106b	6533	6525	-11.4	-11.44	0.047
HRV-1B1	miR-18a	7059	7053	-18.7	-19.34	0.64
HRV-1B	miR-19b	2309	2301	-6.4	-7.08	0.68
HRV-1B	miR-19b	5076	5068	-9.2	-10.03	0.83
HRV-1B	miR-106b	177	169	-14.3	-15.51	1.21
HRV-1B	miR-155	624	616	-9.39	-11.23	1.84
HRV-1B	miR-106b	1105	1098	-9.2	-11.47	2.27
HRV-1B	miR-155	4265	4257	-6.91	-9.29	2.38
HRV-1B	miR-155	6641	6633	-5.8	-8.21	2.41
HRV-1B	miR-18a	4866	4858	-8.3	-11.02	2.72
HRV-1B	miR-18a	569	561	-7	-9.77	2.77
HRV-1B	miR-106b	6286	6278	-3.51	-6.53	3.02
HRV-1B	miR-128	6964	6956	-5.69	-8.77	3.08
HRV-1B	miR-155	2384	2376	-4.1	-7.44	3.34
HRV-1B	miR-155	234	226	-6.15	-9.76	3.61
HRV-1B	miR-19b	622	614	-7.4	-11.06	3.66
HRV-1B	miR-106b	441	435	-10.5	-15.27	4.77
HRV-1B	miR-155	6240	6232	-6	-12.02	6.02
HRV-1B	miR-106b	6184	6176	-7.9	-14.56	6.66
HRV-1B	miR-106b	549	541	-6.3	-15.77	9.47
HRV-1B	miR-106b	7007	6999	-7.61	-18.39	10.78

¹Sites identified also by targetscan. HRV: Human rhinovirus.