Identification of host miRNAs that may limit human rhinovirus replication

doi:10.4331/wjbc.v5.i4.437

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Nov 26, 2014 (publication date) through Nov 4, 2024

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World Journal of Biological Chemistry

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1949-8454

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Baishideng Publishing Group Inc, 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA

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World J Biol Chem. Nov 26, 2014; 5(4): 437-456
Published online Nov 26, 2014. doi: 10.4331/wjbc.v5.i4.437

Table 4 MiRanda predictions on human rhinovirus-1B

Virus	miR	Site start	Site end	Score	Energy (kcal/mol)		Alignment
HRV-1B	106b	2257	2276	141	-18.24	miR:	uaGACGUGACAGUCGUGAAAu
							\|\|\|\|\| \| \| \| \|\| \|\|\|\|\|
						site:	uuCUGCA-UGUAAGGACUUUu
HRV-1B	155	3704	3723	156	-17.59	miR:	ugGGGAUAGUGCUAAUCGUAAUu
							:\|\| \|\|\|\| \| \|\|\|\|\|\|\|\|
						site:	aaUCCAAUCA-- --A-UAGCAUUAg
HRV-1B	106b	5459	5478	160	-14.6	miR:	uagACGUGACAGUCGUGAAAu
							\|\|: \| \| \| : \| \|\|\|\|\|\|\|
						site:	gaaUGUAAU--UUAGCACUUUc
HRV-1B	155	2878	2901	144	-14.2	miR:	ugGGGAUAGU--GCUAAUCGUAAUu
							\| : : \| \| \|\| : \| \| \| \| \| \| \| \| :
						site:	cuCUUUACCAUUUCUUAGCAUUGc
HRV-1B	155	5984	6005	159	-13.65	miR:	ugGGGAUAGUGCUAAUCGUAAUu
							: : \|\|\| \| \| \| \| \| \| \| \| \| \| \|
						Site:	gaUUCUA--AACCAAUAGCAUUAg
HRV-1B	128	1809	1829	147	-13.12	miR:	uuucucuggcCAAGUGACACu
							\| \| \|\|\|\|\|\|\|
						Site:	acauuaguauGUACACUGUGc
HRV-1B	19b	5071	5095	153	-10.35	miR:	agucaAAACG---UACCUAAACGUGu
							\| \| \| \| \| \| \| \|\|\|\|\|\|\|
						Site:	uguaaUUUACAAAUUGUUUUGCACa

HRV: Human rhinovirus.

Citation: Bondanese VP, Francisco-Garcia A, Bedke N, Davies DE, Sanchez-Elsner T. Identification of host miRNAs that may limit human rhinovirus replication. World J Biol Chem 2014; 5(4): 437-456
URL: https://www.wjgnet.com/1949-8454/full/v5/i4/437.htm
DOI: https://dx.doi.org/10.4331/wjbc.v5.i4.437