Identification of host miRNAs that may limit human rhinovirus replication

doi:10.4331/wjbc.v5.i4.437

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Nov 26, 2014 (publication date) through Nov 4, 2024

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World Journal of Biological Chemistry

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1949-8454

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Baishideng Publishing Group Inc, 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA

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World J Biol Chem. Nov 26, 2014; 5(4): 437-456
Published online Nov 26, 2014. doi: 10.4331/wjbc.v5.i4.437

Table 3 Targetscan predictions on human rhinovirus -1B, -16, -14, -27

Virus	MiR	Site type	Site start	Site end	Context+ score		Alignment
HRV-1B	18a	7mer-1a	7053	7059	0.163	site:	GUGCACUGUAUAUCCCACCUUAU
							\| \| \| \| \| \| \| \| \| \| \| \|
						miR:	GAUAGACGUGAUCUAC----- -GUGGAAU
HRV-1B	128	7mer-m8	1822	1828	-0.017	site:	AAACAUUAGUAUGUACACUGUGC
							\| \| \| \| \| \| \|
						miR:	UUUCUCUGGCCAAGUGACACU
HRV-1B	155	7mer-m8	3716	3722	-0.014	site:	AUAAAUCCAAUCAAU- ---AGCAUUAG
							\| \| \| \| \| \| \| \| \| \| \|
						miR:	UGGGGAUAGUGCUAAUCGUAAUU
HRV-1B	155	7mer-m8	5998	6004	-0.013	site:	UGAUUCUAAACCAAUAGCAUUAG
							\| \| \| \| \| \| \|
						miR:	UGGGGAUAGUGCUAAUCGUAAUU
HRV-1B	19b	8mer-1a	5088	5095	0.021	Site:	UAAUUUACAAAUUGUUUUGCACA
							\| \| \| \| \| \| \|
						miR:	AGUCAAAACGUACCUAAACGUGU
HRV-1B	106b	7mer-m8	5471	5477	0.025	Site:	CCAGAAUGUAAUUUAGCACUUUC
							\| \| \| \| \| \| \|
						miR:	UAGACGUGACAGUCGUGAAAU
HRV-16	128	7mer-m8	3593	3599	-0.04	Site:	GAUCUUAGACACUUUCACUGUGC
							\| \| \| \| \| \| \| \| \| \| \|
						miR:	UUUCUCUGGCCAAGUGACACU
HRV-16	155	7mer-m8	6133	6139	-0.036	Site:	UUCCAAACUUAAGCUAGCAUUAG
							\| \| \| \| \| \| \|
						miR:	UGGGGAUAGUGCUAAUCGUAAUU
HRV-16	106b	7mer-1a	3802	3808	0.107	Site:	GCAAACAAUAAUUGCCACUUUAA
							\| \| \| \| \| \|
						miR:	UAGACGUGACAGUCGUGAAAU
HRV-14	128	7mer-1a	620	626	-0.059	Site:	CAUAUAUAUACAUAUACUGUGAU
							\| \| \| \| \| \|
						miR:	UUUCUCUGGCCAAGUGACACU
HRV-14	155	7mer-m8	6082	6088	-0.056	Site:	ACUUACACUAAAAGAAGCAUUAU
							\| \| \| \| \| \| \|
						miR:	UGGGGAUAGUGCUAAUCGUAAUU
HRV-14	19b	7mer-m8	5255	5261	-0.001	Site:	GGACCAAACACAGAAUUUGCACU
							\| \| \| \| \| \| \|
						miR:	AGUCAAAACGUACCUAAACGUGU
HRV-14	106b	8mer-1a	2503	2510	0.047	Site:	CAGAACUACCUACAUGCACUUUA
							\| \| \| \| \| \| \|
						miR:	UAGACGUGACAGUCGUGAAAU
HRV-14	106b	7mer-m8	4414	4420	0.057	Site:	UCCACCAGAUCCCAAGCACUUUG
							\| \| \| \| \| \| \|
						miR:	UAGACGUGACAGUCGUGAAAU
HRV-27	18a	7mer-1a	7121	7127	-0.134	Site:	AGGUUCUUGUGAUACCACCUUAC
							\| \| \| \| \| \|
						miR:	GAUAGACGUGAUCUACGUGGAAU
HRV-27	19b	7mer-m8	66	72	-0.11	Site:	CUGGUAUUUUGUACC---UUUGCACG
							\| \| \| \| \| \| \| \| \| \| \| \|
						miR:	AGUCAAAACGUACCUAAACGUGU
HRV-27	128	7mer-1a	619	625	-0.053	Site:	AUAUAUAGCAUAUAUACUGUGAU
							\|\|\|\|\|\|
						miR:	UUUCUCUGGCCAAGUGACACU
HRV-27	155	7mer-1a	6152	6158	0.018	Site:	CUUAUGUUAGUUUGGGCAUUAAG
							\| \| \| \| \| \|
						miR:	UGGGGAUAGUGCUAAUCGUAAUU
HRV-27	106b	8mer-1a	1193	1200	0.025	Site:	CAAAAUUUCACAGUG--GCACUUUA
							\| \| \| \| \| \| \| \| \| \|
						miR:	UAGACGUGACAGUCGUGAAAU
HRV-27	128	7mer-1a	1552	1558	0.049	Site:	CCCAGUAUACCUGUU--ACUGUGAC
							\| \| \| \| \| \| \| \| \|
						miR:	UUUCUCUGGCCAAGUGACACU
HRV-27	19b	7mer-m8	4192	4198	0.058	Site:	CAAAUGUCUCAGAAGUUUGCACC
							\| \| \| \| \| \| \|
						miR:	AGUCAAAACGUACCUAAACGUGU
HRV-27	155	7mer-m8	4632	4638	0.097	Site:	UGUGUUGAACCCUGAAGCAUUAG
							\| \| \| \| \| \| \|
						miR:	UGGGGAUAGUGCUAAUCGUAAUU

HRV: Human rhinovirus.

Citation: Bondanese VP, Francisco-Garcia A, Bedke N, Davies DE, Sanchez-Elsner T. Identification of host miRNAs that may limit human rhinovirus replication. World J Biol Chem 2014; 5(4): 437-456
URL: https://www.wjgnet.com/1949-8454/full/v5/i4/437.htm
DOI: https://dx.doi.org/10.4331/wjbc.v5.i4.437