Gene targeting and Calcium handling efficiencies in mouse embryonic stem cell lines

Table 3 Differentially regulated transcripts between R1 and HM-1 embryonic stem cells

Lion ID	Gene symbol	Gene name	Locus ID	Unigene ID	Reference sequence	Fold change			Chrom location
Min						Aver	Stdv
Up regulated in HM-1 compared to the R1 embryonic stem cells
MG-4-li7	Rps15a	Ribosomal protein S15a	267019	Mm.288212	NM_170669	1.44	1.5	0.08	7 F1
MG-3-6b3	HSPa9a	Heat shock protein 9a	15526	Mm.209419	NM_010481	1.4	1.48	0.05	18 15cM
MG-14-78c20	B930046C15Rik	RIKEN cDNA B930046C15Rik gene	544998	Mm.327147	XM_987063	1.39	1.53	0.1	14 A1
MG-13-43a6	Lefty1	Left right determination factor	13590	Mm.378911	NM_010094	1.33	1.5	0.14	1 F
MG-3-1 1116	LOC544988	Hypothetical protein LOC544988	544988	Mm.350858	NM_001024712	1.29	1.4	0.08	14 A1
MG-3-32g7	Nsmce1	Non.SMC element 1 homolog	67711	Mm.4467	NM_026330	1.28	1.43	0.1	7 F3
MG-11-2g16	Glo1	Glyoxylase 1	109801	Mm.261984	NM_025374	1.26	1.33	0.05	17 16.0 cM
MG-3-223f10	EST					1.26	2.35	1.26
Down regulated in HM-1 compared to the R1 embryonic stem cells
MG-15-102f2	Dab2	Disabled homolog 2 drosophila	13132	Mm.240830	NM_001008702	1.99	2.13	0.13	15 6.7cM
MG-12-140m7	Spink3	Serine protease inhibitor Kazal-type 3 precursor	20730	Mm.272	NM_009258	1.92	2.1	0.14	18 B3
MG-3-251i14	Sparc	secreted acidic cystein rich glycoprotein	20692	Mm.291442	NM_009242	1.86	2.05	0.13	11 29.9 cM
MG-15-55i8	Amot	Angiomotin	27494	Mm.100068	NM_153319	1.76	1.9	0.14	X F2
MG-8-118g22	Krt2-8	Keratin complex 2 basic gene 8	16691	Mm.358618	NM_031170	1.75	1.93	0.13	15 58.86cM
MG-13-5n3	Cryab	Crystallin, α B	12955	Mm.178	NM_009964	1.7	1.78	0.1	9 29.0cM
MG-15-261m9	BC024814	cDNA sequence BC024814	239706	Mm.214953	NM_146247	1.69	1.88	0.15	16 A1
MG-8-17b12	Prph1	Peripherin 1	19132	Mm.2477	NM_013639	1.66	1.98	0.25	15 55.5 cM
Table 3b. cont.	Gpc4	Glypican-4 precursor (K-glypican)	14735	Mm.1528	NM_008150	1.62	2.1	0.37	X 16.0 cM
MG-8-34a20
MG-13-91a5	Serpinh1	Serine (Cystein) proteinase inhibitor, clade H, member 1	12406	Mm.22708	NM_009825	1.56	1.63	0.05	7 E1
MG-14-101o20	Ctgf	Connective tissue growth factor precursor	14219	Mm.1810	NM_010217	1.56	1.73	0.1	10 17 cM
MG-12-197o17	Podxl	Podocalyxin like protein 1 precursor	27205	Mm.89918	NM_013723	1.46	1.58	0.15	6 10.0 cM
MG-6-75c23	Lamc1	Laminin gamma 1	226519	Mm.1249	NM_010683	1.45	1.5	0.08	1 81.1 cM
MG-8-118f19	Anxa2	Annexin 2	12306	Mm.238343	NM_007585	1.45	1.5	0.08	9 37.0 cM
MG-16-54i3	9630046K23Rik	RIKEN cDNA 9630046K23 gene	224143	Mm.284366	NM_172380	1.44	1.58	0.13	16 B3
MG-6-2i22	Timp2	tissue inhibitor of metalloproteinase 2	21858	Mm.206505	NM_011594	1.42	1.5	0.08	11 72.0 cM
MG-13-1c9	S100a10	Calpactin I light chain	20194	Mm.1	NM_009112	1.41	1.48	0.05	3 41.7 cM
MG-14-79j4	Lhfp12	Lipoma HMGIC fusion partner-like 2, mRNA	218454	Mm.316553	NM_172589	1.41	1.58	0.21	13 C3-D1
MG-3-38p22	Ctsl	Cathepsin L precursor	13039	Mm.930	NM_009984	1.38	1.63	0.15	13 30.0 cM
MG-3-91d9	Kcnh2	Potassium voltage-gated channel, sub family H (eagralated), member 2	16511	Mm.6539	AC113055	1.38	1.53	0.1	5
MG-3-45k24	Gsn	Gelsoin	227753	Mm.21109	NM_146120	1.37	1.48	0.15	2 24.5 cM
MG-6-31m16	Clec21	C-type lectin domain family, member 1	381758	Mm.349066	XM_355753	1.37	1.4	0	6 B1
MG-13-2e2	EST	EST			CR517795	1.36	1.48	0.1
MG-3-171n1	Iap1-3	Intracisternal A particles, Eya 1 linked	15601		AF097546	1.35	1.5	0.08	1 10.4 cM
MG-3-85d19	Sfrsi	Splicing factor, arginine/serine-rich (ASF/SFZ)		Mm.45645	CR518131	1.34	2.05	0.89	11
MG-12-195b2	Timp3	Metalloproteinase inhibitor 3 precursor (TIMP3) tissue inhibitor	21859	Mm.4871	NM_011595	1.33	1.45	0.13	10 47.0 cM
MG-14-58h24	Col8a1	Procollagen type VIII, α 1	12837	Mm.370175	BC058281	1.33	1.45	0.1	16 C1.1
MG-3-23b6	Tpm1	Tropomyosin 1 α	22003	Mm.121878	M22479	1.32	1.38	0.05	9 40.0 cM
MG-13-1k15	S100a4	S100 calcium binding protein A4	20198	Mm.3925	BC051214	1.31	1.45	0.13	3 43.6 cM
Table 3b. cont.	S100a1	S100 calcium binding protein A1	20193	Mm.24662	NM_011309	1.31	1.35	0.06	3 43.6 cM
MG-3-72e5
MG-68-98m4	Ctsz	Cathepsin Z precursor	64138	Mm.156919	NM_022325	1.31	1.4	0.08	2 103.5 cM
MG-13-117j9	Ahnak	AHNAK nucleoprotein (desmoyokin), mRNA	66395	Mm.203866	BC006892	1.29	1.4	0.08	19 A
MG-15-217f23	A930026I22Rik	RIKEN cDNA A930026I22 gene	77970	Mm.259790	BX632387	1.28	1.38	0.05	19 C3
MG-6-30n6	S100a6	S100 calcium binding protein A6 (Calcyclin)	20200	Mm.100144	NM_011313	1.28	1.45	0.1	3 43.6 cM
MG-6-30o19	Clstn3	calsyntenin 3	232370	Mm.193701	NM_153508	1.28	1.35	0.06	6 F2
MG-6-31b18	Camkk2	Calcium/calmodulin-dependent protein kinase kinase 2 β	207565	Mm.289237	NM_145358	1.28	1.3	0	5 F
MG-12-3f11	S100g	S100 calcium binding protein G	12309	Mm.6891	NM_009789	1.27	1.3	0	X F4
MG-6-1g19	My16	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	17904	Mm.337074	NM_010860	1.27	1.35	0.06	10
MG-6-31b24	4933433P14Rik	RIKEN cDNA 4933433P14 gene	66787	Mm.248019	BC031494	1.27	1.4	0.08	12 E
MG-12-42l4	Cotl1	Coactosin-like 1 (Dictyostelium)	72042	Mm.141741	XM_489250	1.26	1.45	0.13	8 E1
MG-3-254m20	A430065p19	Riken A430065P19 gene	329421	Mm.99648	NM_177376	1.26	1.45	0.13	2 C2
MG-3-37p2	Qscn6	Quiescin Q6	104009	Mm.27035	NM_001024945	1.26	1.38	0.05	1 G3
MG-6-31h10	Map3k11	mitogen activated protein kinase kinase kinase 11	26403	Mm.185020	NM-022012	1.26	1.33	0.05	19 0.5 cM
MG-6-82c15	Dbp	D site albumin promoter binding protein	13170	Mm.378235	NM_016974	1.26	1.3	0	7 23.0 cM
MG-8-17n2	Stard9	START domain containing 9	211824	Mm.246506	XM_619801	1.26	1.38	0.05	2 F1
MG-14-95h3	Ggta1	Glycoprotein galactosyltransferase α 1	14594	Mm.281124	NM_010283	1.25	1.38	0.15	2 25.0 cM
MG-3-6912	AC116589				AC116589	1.25	1.4	0.08	13